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The map label for this gene is lytR [H]

Identifier: 238925104

GI number: 238925104

Start: 2625417

End: 2626886

Strand: Reverse

Name: lytR [H]

Synonym: EUBREC_2757

Alternate gene names: 238925104

Gene position: 2626886-2625417 (Counterclockwise)

Preceding gene: 238925105

Following gene: 238925103

Centisome position: 76.15

GC content: 34.56

Gene sequence:

>1470_bases
ATGAGAGAGAATAATATCAGAGAAGTAAAGAAAGAAAAAAGTGATAAGAAGTTTTCATTTAAGTATATAGTGTGGCTGAT
TGCCATGGCTTTTCTTGTCACATCGGTTGTTGTGTTGACTAAAGTAGTAAAAATGAATATTTTGCCGACAAAGTTTCTTG
TAGTTGCAATAGGTGTAGTTGTGCTTATTATTTTATTCGATTTATTAGCAGCAAGAAAACTGTGGTCCGGTATACTTACT
AGCATTATTTCAATTGCTTTGATTGCCGCTATGATAATAGGAATTATCGCCATAAATAAAGTGGACAAGACTGTGGATAT
AGTCACAGACAAGGGCACAGAAGAAAAGACGGAGATGGTTATAGCAGTTCTGGCTGATTCTGATGTGGAAAAAATAACAG
ATCTTTCAGAGCTTTTGATAGGATATCTTGATGATTATGATGTTAATTCGTCTAAAAAGGTAATGGATGAGATTGATAAA
AGCGTGGGTGGATCGGCAAATTATAATGCTTTTGATGATAAATTCGCTATGGTTGATGCCTTATATAATCAGACTATCAA
GGCAATGATCTTAAATAAAGCCAATATTGATGTTATCAAAGATGGTGAAGGATACGAGGATTTTGAGGACAAAGTTAAGA
TTATTTATTCTTCAGAAATAACAAATTATATTGAAATAGTAGATAAAGAACAAAATACAAATCTGAATCAGTTTGTAGTA
TATATCAGTGGTATAGATACTTTTGGAGATGTATCTGTCAGAAGTAGAAGTGATGTAAATATTCTTGCTGTTGTGAATAC
AAAGACTAAGCATATTCAGTTGATCAATACTCCTAGAGATTATTATATAGAGCATCCAAAGAGCAATGGTGTGAAGGATA
AGCTTACACATGCCGGACTTTATGGAGTAGAAAATTCGATTGGAGCACTTGAAAATCTGTATGGTGTGAAGATTAATTAC
TATGTCCGCATGAATTTTAGTGGATTTGAAGATATCATAGATGCTATGGGGGGAATTGATGTTTATTCGGACAAAGATTT
TACAGTTGAACCGGTTAAACATTATACCGTAGGTGTAAACCACTTATCAGGCATTGAGGCTCTGGCTTTTGCAAGAGAGA
GACATGCTTTTGCTGCTGGTGATATACAACGTGGGCAGAACCAGATGAAGGTGATTATTGCTATGATCAATAAGCTTTCA
TCAAAGGATGTTTTATATAACTATTCAAATGTATTAGATGGAATTGCGGGAACATTCCAGACTGACATGGCTTCAGATGA
TATATATACCTTAGTAAAGAAACAGTTGGTTGATAATACGAAATATACTATTGACTCATATTCAGTAACAGGTACAGGGG
ATTCATGTACTACTTACTCTACACCAAAGACAAAGGTTTGGGTTATGCAGCCGAATATGGATGAGGTGGAGCATGCTAAA
GGCCTGATTAACAGTGTTTTAAGTGAATAA

Upstream 100 bases:

>100_bases
ATGCCCCGATGCTTGTTGCAGCAGAGCATGATGAATGTTATCTTAAGATGATCAATTCGTTATTTGATCTACAGGTTAAT
GTGAACTAGAAGGAGGCACC

Downstream 100 bases:

>100_bases
ATGGCGCATTTATAGTTAGAAGAGATGTTTAAGGAGAGGTACTAATGAAGAAAAGATTTATTGCGGTTACTTTATCGGTT
ATGATGCTTTTTTCTTCCAA

Product: hypothetical protein

Products: NA

Alternate protein names: Membrane-bound protein lytR [H]

Number of amino acids: Translated: 489; Mature: 489

Protein sequence:

>489_residues
MRENNIREVKKEKSDKKFSFKYIVWLIAMAFLVTSVVVLTKVVKMNILPTKFLVVAIGVVVLIILFDLLAARKLWSGILT
SIISIALIAAMIIGIIAINKVDKTVDIVTDKGTEEKTEMVIAVLADSDVEKITDLSELLIGYLDDYDVNSSKKVMDEIDK
SVGGSANYNAFDDKFAMVDALYNQTIKAMILNKANIDVIKDGEGYEDFEDKVKIIYSSEITNYIEIVDKEQNTNLNQFVV
YISGIDTFGDVSVRSRSDVNILAVVNTKTKHIQLINTPRDYYIEHPKSNGVKDKLTHAGLYGVENSIGALENLYGVKINY
YVRMNFSGFEDIIDAMGGIDVYSDKDFTVEPVKHYTVGVNHLSGIEALAFARERHAFAAGDIQRGQNQMKVIIAMINKLS
SKDVLYNYSNVLDGIAGTFQTDMASDDIYTLVKKQLVDNTKYTIDSYSVTGTGDSCTTYSTPKTKVWVMQPNMDEVEHAK
GLINSVLSE

Sequences:

>Translated_489_residues
MRENNIREVKKEKSDKKFSFKYIVWLIAMAFLVTSVVVLTKVVKMNILPTKFLVVAIGVVVLIILFDLLAARKLWSGILT
SIISIALIAAMIIGIIAINKVDKTVDIVTDKGTEEKTEMVIAVLADSDVEKITDLSELLIGYLDDYDVNSSKKVMDEIDK
SVGGSANYNAFDDKFAMVDALYNQTIKAMILNKANIDVIKDGEGYEDFEDKVKIIYSSEITNYIEIVDKEQNTNLNQFVV
YISGIDTFGDVSVRSRSDVNILAVVNTKTKHIQLINTPRDYYIEHPKSNGVKDKLTHAGLYGVENSIGALENLYGVKINY
YVRMNFSGFEDIIDAMGGIDVYSDKDFTVEPVKHYTVGVNHLSGIEALAFARERHAFAAGDIQRGQNQMKVIIAMINKLS
SKDVLYNYSNVLDGIAGTFQTDMASDDIYTLVKKQLVDNTKYTIDSYSVTGTGDSCTTYSTPKTKVWVMQPNMDEVEHAK
GLINSVLSE
>Mature_489_residues
MRENNIREVKKEKSDKKFSFKYIVWLIAMAFLVTSVVVLTKVVKMNILPTKFLVVAIGVVVLIILFDLLAARKLWSGILT
SIISIALIAAMIIGIIAINKVDKTVDIVTDKGTEEKTEMVIAVLADSDVEKITDLSELLIGYLDDYDVNSSKKVMDEIDK
SVGGSANYNAFDDKFAMVDALYNQTIKAMILNKANIDVIKDGEGYEDFEDKVKIIYSSEITNYIEIVDKEQNTNLNQFVV
YISGIDTFGDVSVRSRSDVNILAVVNTKTKHIQLINTPRDYYIEHPKSNGVKDKLTHAGLYGVENSIGALENLYGVKINY
YVRMNFSGFEDIIDAMGGIDVYSDKDFTVEPVKHYTVGVNHLSGIEALAFARERHAFAAGDIQRGQNQMKVIIAMINKLS
SKDVLYNYSNVLDGIAGTFQTDMASDDIYTLVKKQLVDNTKYTIDSYSVTGTGDSCTTYSTPKTKVWVMQPNMDEVEHAK
GLINSVLSE

Specific function: Attenuator role for operon expression [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 54489; Mature: 54489

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRENNIREVKKEKSDKKFSFKYIVWLIAMAFLVTSVVVLTKVVKMNILPTKFLVVAIGVV
CCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
VLIILFDLLAARKLWSGILTSIISIALIAAMIIGIIAINKVDKTVDIVTDKGTEEKTEMV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHEE
IAVLADSDVEKITDLSELLIGYLDDYDVNSSKKVMDEIDKSVGGSANYNAFDDKFAMVDA
EEEECCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
LYNQTIKAMILNKANIDVIKDGEGYEDFEDKVKIIYSSEITNYIEIVDKEQNTNLNQFVV
HHHHHHHHHEEECCCCEEEECCCCCCCHHCCEEEEECHHHHHHHHHEECCCCCCCEEEEE
YISGIDTFGDVSVRSRSDVNILAVVNTKTKHIQLINTPRDYYIEHPKSNGVKDKLTHAGL
EEECCCCCCCCEECCCCCCEEEEEEECCCEEEEEEECCHHHEEECCCCCCCHHHHHHCCC
YGVENSIGALENLYGVKINYYVRMNFSGFEDIIDAMGGIDVYSDKDFTVEPVKHYTVGVN
CCCCHHHHHHHHHHEEEEEEEEEECCCCHHHHHHHHCCCEEECCCCCEECCCHHEEECCH
HLSGIEALAFARERHAFAAGDIQRGQNQMKVIIAMINKLSSKDVLYNYSNVLDGIAGTFQ
HHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHH
TDMASDDIYTLVKKQLVDNTKYTIDSYSVTGTGDSCTTYSTPKTKVWVMQPNMDEVEHAK
HCCCCCHHHHHHHHHHHCCCCEEEECEEEECCCCCCCCCCCCCCEEEEECCCHHHHHHHH
GLINSVLSE
HHHHHHHCC
>Mature Secondary Structure
MRENNIREVKKEKSDKKFSFKYIVWLIAMAFLVTSVVVLTKVVKMNILPTKFLVVAIGVV
CCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
VLIILFDLLAARKLWSGILTSIISIALIAAMIIGIIAINKVDKTVDIVTDKGTEEKTEMV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHEE
IAVLADSDVEKITDLSELLIGYLDDYDVNSSKKVMDEIDKSVGGSANYNAFDDKFAMVDA
EEEECCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
LYNQTIKAMILNKANIDVIKDGEGYEDFEDKVKIIYSSEITNYIEIVDKEQNTNLNQFVV
HHHHHHHHHEEECCCCEEEECCCCCCCHHCCEEEEECHHHHHHHHHEECCCCCCCEEEEE
YISGIDTFGDVSVRSRSDVNILAVVNTKTKHIQLINTPRDYYIEHPKSNGVKDKLTHAGL
EEECCCCCCCCEECCCCCCEEEEEEECCCEEEEEEECCHHHEEECCCCCCCHHHHHHCCC
YGVENSIGALENLYGVKINYYVRMNFSGFEDIIDAMGGIDVYSDKDFTVEPVKHYTVGVN
CCCCHHHHHHHHHHEEEEEEEEEECCCCHHHHHHHHCCCEEECCCCCEECCCHHEEECCH
HLSGIEALAFARERHAFAAGDIQRGQNQMKVIIAMINKLSSKDVLYNYSNVLDGIAGTFQ
HHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHH
TDMASDDIYTLVKKQLVDNTKYTIDSYSVTGTGDSCTTYSTPKTKVWVMQPNMDEVEHAK
HCCCCCHHHHHHHHHHHCCCCEEEECEEEECCCCCCCCCCCCCCEEEEECCCHHHHHHHH
GLINSVLSE
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12721630 [H]