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The map label for this gene is ybcS [C]

Identifier: 238925102

GI number: 238925102

Start: 2620463

End: 2622847

Strand: Reverse

Name: ybcS [C]

Synonym: EUBREC_2755

Alternate gene names: 238925102

Gene position: 2622847-2620463 (Counterclockwise)

Preceding gene: 238925103

Following gene: 238925101

Centisome position: 76.03

GC content: 35.35

Gene sequence:

>2385_bases
ATGAAGAGTGAACTAAAAAGTAAGATTATAATAATATTTTTGATAATTTTTGCGACTATTGGAGGATATAATTCATTGAT
TTATGCGGATGAACAAAAAAAATCTTATGAGTATGATATGTATGAAAACGGTTCGGGTAAGGATATTACTTCCGACGAAG
CTGTAAAAAGCGAGGGAGATAATCTAAAAGAATCTGATGGAACAGATCTGTTTCGTACTTCAAATATGGGAATAAGTCAG
AGTGGAGTGGATTTAATAAAACAGTTTGAGGGATGCAGATTGACTGCTTATAAGGTTACAAGCAGTGAAAAGTATTATAC
TATAGGCTATGGTCATTATGGATCTGATGTGTATGCAGGGATGACTATTACTCAGGCACAGGCTGAAAGTATGCTTAAAT
CGGATCTTGTAAGATTTGAAGGATATGTAAACACATTTTTAAATAAATATAATATTACAATTAATCAGAATCAATTTGAT
GCCTTGGTAAGTTTTACATATAATGTTGGAAATGTTTGGGTTAGTTACAATACTTTTCAGTTGAAAACATATTTGATAAA
TGGGGTATCAAATTATAACAGCGATCAGATAACAACTGCATTTACAAATTGGAACAAGTCGGGTGGCGTAGTGTTGGATG
GACTGACTAGAAGAAGAAAAGCAGAGGCAGCACTGTTTCTCAATGGAAATACCAATGATTGTTCGTGTTCAGATTCATAT
GCAGGAGATTATGTTTGTACTGCGTCTTCAGCTTTAAATATAAGAAGTGGACATGGTGGTACAGTGATTGGAACAATCCC
ATCAGGAGCGGTTGTATATGTTTCAAAAGGGGATGGAACATGGGCGCATGTATCATATAATGGAATTAATGGATGCTCAT
CCATGCAGTACTTAAAGAAAAAACAAGATACTCTTAATTATCAGTTACATGTATGGATATCCGATACTGATATGGGAAGT
GTACCAGAGCACTTTTATAAAGGAAAATCATACTATTTATGCTATGAAATATTAGATATGGATACAGGAAAAAGAGTAGA
TATAGATCATGATGGACTTAATTATAGTGTAAGTGAAGTATTTGGATATCCTGATGGAACAAAGTCTGATCCATGTACTT
ACGGAAATGATTACAATTGGTATAGAAGCTATATGGGGGCAACAGGTCAGTATAAAGGAATTGTAACTGTTACAGGTGAT
ATAAATACTTCCTGTGAAATTGGTTGGAAAGTTGAGTATTCAGGTAATGTAACGTTAAAAGCATCTACATATTCGGTTAA
TCTTAATATACCGGGAAACATAAGTCAAAGGGTTACATTAACAATGGAGGGAGAGATACCTGATAATTGTGCATTGTCGA
AAGATTCATCTGGGAATGGATTTTCTGCAAAATGGGATGGCGATTGGAATGGTTGGTCGCATGATATGGTTATTACCGGA
GAGGGGTCTGGCTCCGGAGTGATAATAGTGTCTGTTGTGGATGGAAAAAATGCTTCTGTCAAATATGGAACTATTAAGAT
ATATGTTAATGTGACTAAAGAACAAAAGACTGTTTCCGCGATGAGTGGAGTAAAATTAGCCGGTCGGGCAGATGATGCAT
TGCGCATTAATTGGAATATAAATAGTAGTGCATCGGGATATATCATAGAGCAATACAAAAATGGTAATTGGAGTCGTATA
GCACGAATTGCTGATAAGAATACAAAGACATATAGAATAGAAAAACTTACTAATTCTACAGATTATAGGTTTAGAATTCA
AGGATTTAATTTTGACAATGGAACGCCTGTATATGGAAGTTATACATATGTTTCGGGAAAAACGAATCCGTCAAAAATAA
CAGGAGTGACGATTGGAGGTAGAGCAGTCGATGCGCTCAGACTAAATTGGAATAAAGTAAGCGGTGCCTCCGGGTATATC
ATTGAGAAATATGAAAATGGGAAGTGGAATAGGATTGCAAGAATTGCAGATGTAAAAACACGGACATATAGAGTGGAAGG
GCTTAAGGCATCTACAACTTACAAGTTTAGAATAAAAGCATTTGGCTTTAGTGGAAGTACACCATTATACAGTACTTATA
CATACATTAACGGAAGAACGACCCCGATGGCTGTAACAGGTGTTTGTATAGGTGGAACTGCAAAAGATGCATTAAGAGTT
AACTGGAATAAAGTTAGTGGGGCATCAGGATACATAATAGAAAAGTATGAGAATGGTAATTGGAACAGAGTAGCCAGAAT
AGCAGATGGAAATACAAAGACTTACAGAGTGGAGAAGCTTAAAAAGAATACAGCATATGTATTTAGAATCAGAGCGTTTG
ATTTTGATGGAAATACACCGTTATACAGTGATTCGAAATATGTAAATGGTAGTACAAATAGGTGA

Upstream 100 bases:

>100_bases
TATATGAAATCTATAACATGTACTTGTAAAATTGGGAAAAAAGTTGCATAATATAAATGAGTATAAAGAACTATATGTAA
TTTTTGAATAGGGGGAAAAT

Downstream 100 bases:

>100_bases
TAGGAGGGATATTTTTTATGAAACAAATGTGTAGAAGAGAAAAAAAGTGGATTAAGATTATTGCATGTATTATGATCTCC
ATATTGATGGTACAATTGAG

Product: putative phage-related lysozyme

Products: Hydrolysed Peptidoglycan; Chitodextrin [C]

Alternate protein names: Phage-Related Lysozyme; Phage Related Lysozyme; Glycoside Hydrolase Family; Phage Lysozyme; Glycoside Hydrolase Family Protein; Lysozyme Family Protein; Family; Neogenin-Like; Cellulose 1 4-Beta-Cellobiosidase; N-Acetylmuramoyl-L-Alanine Amidase; Gifsy-2 Prophage Lysozyme; Collagenolytic Protease; Lysozyme-Family Localization Factor SpmX; Bacteriophage Lysozyme; Rhs Accessory Genetic Element; Fibronectin Domain-Containing Lipoprotein; Fibronectin Type III Domain-Containing Protein; Protein Tyrosine Phosphatase Receptor Type J

Number of amino acids: Translated: 794; Mature: 794

Protein sequence:

>794_residues
MKSELKSKIIIIFLIIFATIGGYNSLIYADEQKKSYEYDMYENGSGKDITSDEAVKSEGDNLKESDGTDLFRTSNMGISQ
SGVDLIKQFEGCRLTAYKVTSSEKYYTIGYGHYGSDVYAGMTITQAQAESMLKSDLVRFEGYVNTFLNKYNITINQNQFD
ALVSFTYNVGNVWVSYNTFQLKTYLINGVSNYNSDQITTAFTNWNKSGGVVLDGLTRRRKAEAALFLNGNTNDCSCSDSY
AGDYVCTASSALNIRSGHGGTVIGTIPSGAVVYVSKGDGTWAHVSYNGINGCSSMQYLKKKQDTLNYQLHVWISDTDMGS
VPEHFYKGKSYYLCYEILDMDTGKRVDIDHDGLNYSVSEVFGYPDGTKSDPCTYGNDYNWYRSYMGATGQYKGIVTVTGD
INTSCEIGWKVEYSGNVTLKASTYSVNLNIPGNISQRVTLTMEGEIPDNCALSKDSSGNGFSAKWDGDWNGWSHDMVITG
EGSGSGVIIVSVVDGKNASVKYGTIKIYVNVTKEQKTVSAMSGVKLAGRADDALRINWNINSSASGYIIEQYKNGNWSRI
ARIADKNTKTYRIEKLTNSTDYRFRIQGFNFDNGTPVYGSYTYVSGKTNPSKITGVTIGGRAVDALRLNWNKVSGASGYI
IEKYENGKWNRIARIADVKTRTYRVEGLKASTTYKFRIKAFGFSGSTPLYSTYTYINGRTTPMAVTGVCIGGTAKDALRV
NWNKVSGASGYIIEKYENGNWNRVARIADGNTKTYRVEKLKKNTAYVFRIRAFDFDGNTPLYSDSKYVNGSTNR

Sequences:

>Translated_794_residues
MKSELKSKIIIIFLIIFATIGGYNSLIYADEQKKSYEYDMYENGSGKDITSDEAVKSEGDNLKESDGTDLFRTSNMGISQ
SGVDLIKQFEGCRLTAYKVTSSEKYYTIGYGHYGSDVYAGMTITQAQAESMLKSDLVRFEGYVNTFLNKYNITINQNQFD
ALVSFTYNVGNVWVSYNTFQLKTYLINGVSNYNSDQITTAFTNWNKSGGVVLDGLTRRRKAEAALFLNGNTNDCSCSDSY
AGDYVCTASSALNIRSGHGGTVIGTIPSGAVVYVSKGDGTWAHVSYNGINGCSSMQYLKKKQDTLNYQLHVWISDTDMGS
VPEHFYKGKSYYLCYEILDMDTGKRVDIDHDGLNYSVSEVFGYPDGTKSDPCTYGNDYNWYRSYMGATGQYKGIVTVTGD
INTSCEIGWKVEYSGNVTLKASTYSVNLNIPGNISQRVTLTMEGEIPDNCALSKDSSGNGFSAKWDGDWNGWSHDMVITG
EGSGSGVIIVSVVDGKNASVKYGTIKIYVNVTKEQKTVSAMSGVKLAGRADDALRINWNINSSASGYIIEQYKNGNWSRI
ARIADKNTKTYRIEKLTNSTDYRFRIQGFNFDNGTPVYGSYTYVSGKTNPSKITGVTIGGRAVDALRLNWNKVSGASGYI
IEKYENGKWNRIARIADVKTRTYRVEGLKASTTYKFRIKAFGFSGSTPLYSTYTYINGRTTPMAVTGVCIGGTAKDALRV
NWNKVSGASGYIIEKYENGNWNRVARIADGNTKTYRVEKLKKNTAYVFRIRAFDFDGNTPLYSDSKYVNGSTNR
>Mature_794_residues
MKSELKSKIIIIFLIIFATIGGYNSLIYADEQKKSYEYDMYENGSGKDITSDEAVKSEGDNLKESDGTDLFRTSNMGISQ
SGVDLIKQFEGCRLTAYKVTSSEKYYTIGYGHYGSDVYAGMTITQAQAESMLKSDLVRFEGYVNTFLNKYNITINQNQFD
ALVSFTYNVGNVWVSYNTFQLKTYLINGVSNYNSDQITTAFTNWNKSGGVVLDGLTRRRKAEAALFLNGNTNDCSCSDSY
AGDYVCTASSALNIRSGHGGTVIGTIPSGAVVYVSKGDGTWAHVSYNGINGCSSMQYLKKKQDTLNYQLHVWISDTDMGS
VPEHFYKGKSYYLCYEILDMDTGKRVDIDHDGLNYSVSEVFGYPDGTKSDPCTYGNDYNWYRSYMGATGQYKGIVTVTGD
INTSCEIGWKVEYSGNVTLKASTYSVNLNIPGNISQRVTLTMEGEIPDNCALSKDSSGNGFSAKWDGDWNGWSHDMVITG
EGSGSGVIIVSVVDGKNASVKYGTIKIYVNVTKEQKTVSAMSGVKLAGRADDALRINWNINSSASGYIIEQYKNGNWSRI
ARIADKNTKTYRIEKLTNSTDYRFRIQGFNFDNGTPVYGSYTYVSGKTNPSKITGVTIGGRAVDALRLNWNKVSGASGYI
IEKYENGKWNRIARIADVKTRTYRVEGLKASTTYKFRIKAFGFSGSTPLYSTYTYINGRTTPMAVTGVCIGGTAKDALRV
NWNKVSGASGYIIEKYENGNWNRVARIADGNTKTYRVEKLKKNTAYVFRIRAFDFDGNTPLYSDSKYVNGSTNR

Specific function: Essential For Lysis Of Bacterial Cell Wall, By Showing Cell Wall Hydrolyzing Activity (By Similarity). [C]

COG id: COG3772

COG function: function code R; Phage-related lysozyme (muraminidase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI291045225, Length=338, Percent_Identity=26.6272189349112, Blast_Score=71, Evalue=4e-12,
Organism=Homo sapiens, GI4502961, Length=288, Percent_Identity=24.3055555555556, Blast_Score=70, Evalue=9e-12,
Organism=Homo sapiens, GI291045230, Length=338, Percent_Identity=26.6272189349112, Blast_Score=70, Evalue=1e-11,
Organism=Homo sapiens, GI291045228, Length=338, Percent_Identity=26.6272189349112, Blast_Score=70, Evalue=1e-11,
Organism=Homo sapiens, GI291045223, Length=338, Percent_Identity=26.6272189349112, Blast_Score=70, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.2.1.17 [C]

Molecular weight: Translated: 87919; Mature: 87919

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: PS50853 FN3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSELKSKIIIIFLIIFATIGGYNSLIYADEQKKSYEYDMYENGSGKDITSDEAVKSEGD
CCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEECCEEECCCCCCCCCCHHHHCCCC
NLKESDGTDLFRTSNMGISQSGVDLIKQFEGCRLTAYKVTSSEKYYTIGYGHYGSDVYAG
CCCCCCCCCEEEECCCCCCCCCHHHHHHCCCCEEEEEEEECCCEEEEEEECCCCCCEEEC
MTITQAQAESMLKSDLVRFEGYVNTFLNKYNITINQNQFDALVSFTYNVGNVWVSYNTFQ
EEEEHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCEEEEEEEEEECCEEEEEEEEEE
LKTYLINGVSNYNSDQITTAFTNWNKSGGVVLDGLTRRRKAEAALFLNGNTNDCSCSDSY
EEEEEEECCCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCC
AGDYVCTASSALNIRSGHGGTVIGTIPSGAVVYVSKGDGTWAHVSYNGINGCSSMQYLKK
CCCEEEECCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCHHHHHHHH
KQDTLNYQLHVWISDTDMGSVPEHFYKGKSYYLCYEILDMDTGKRVDIDHDGLNYSVSEV
HCCCCCEEEEEEEECCCCCCCCHHHHCCCCEEEEEEEEECCCCCEEECCCCCCCEEHHHH
FGYPDGTKSDPCTYGNDYNWYRSYMGATGQYKGIVTVTGDINTSCEIGWKVEYSGNVTLK
CCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEEEECCCCCCEEEEEEEEECCCEEEE
ASTYSVNLNIPGNISQRVTLTMEGEIPDNCALSKDSSGNGFSAKWDGDWNGWSHDMVITG
EEEEEEEEECCCCCCEEEEEEECCCCCCCCEECCCCCCCCEEEEECCCCCCCCCCEEEEE
EGSGSGVIIVSVVDGKNASVKYGTIKIYVNVTKEQKTVSAMSGVKLAGRADDALRINWNI
CCCCCCEEEEEEECCCCCEEEEEEEEEEEEECCCCHHHHHHCCEEEECCCCCEEEEEEEE
NSSASGYIIEQYKNGNWSRIARIADKNTKTYRIEKLTNSTDYRFRIQGFNFDNGTPVYGS
CCCCCCEEEEEECCCCHHHEEEECCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCEEEE
YTYVSGKTNPSKITGVTIGGRAVDALRLNWNKVSGASGYIIEKYENGKWNRIARIADVKT
EEEEECCCCCCEEEEEEECCCEEEEEEEECEEECCCCCEEEEEECCCCCCEEEEEEECEE
RTYRVEGLKASTTYKFRIKAFGFSGSTPLYSTYTYINGRTTPMAVTGVCIGGTAKDALRV
EEEEEECEEECCEEEEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCEEEE
NWNKVSGASGYIIEKYENGNWNRVARIADGNTKTYRVEKLKKNTAYVFRIRAFDFDGNTP
EEEEECCCCCEEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEEEEECCCCCC
LYSDSKYVNGSTNR
CCCCCEEECCCCCC
>Mature Secondary Structure
MKSELKSKIIIIFLIIFATIGGYNSLIYADEQKKSYEYDMYENGSGKDITSDEAVKSEGD
CCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEECCEEECCCCCCCCCCHHHHCCCC
NLKESDGTDLFRTSNMGISQSGVDLIKQFEGCRLTAYKVTSSEKYYTIGYGHYGSDVYAG
CCCCCCCCCEEEECCCCCCCCCHHHHHHCCCCEEEEEEEECCCEEEEEEECCCCCCEEEC
MTITQAQAESMLKSDLVRFEGYVNTFLNKYNITINQNQFDALVSFTYNVGNVWVSYNTFQ
EEEEHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCEEEEEEEEEECCEEEEEEEEEE
LKTYLINGVSNYNSDQITTAFTNWNKSGGVVLDGLTRRRKAEAALFLNGNTNDCSCSDSY
EEEEEEECCCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCC
AGDYVCTASSALNIRSGHGGTVIGTIPSGAVVYVSKGDGTWAHVSYNGINGCSSMQYLKK
CCCEEEECCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCHHHHHHHH
KQDTLNYQLHVWISDTDMGSVPEHFYKGKSYYLCYEILDMDTGKRVDIDHDGLNYSVSEV
HCCCCCEEEEEEEECCCCCCCCHHHHCCCCEEEEEEEEECCCCCEEECCCCCCCEEHHHH
FGYPDGTKSDPCTYGNDYNWYRSYMGATGQYKGIVTVTGDINTSCEIGWKVEYSGNVTLK
CCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEEEECCCCCCEEEEEEEEECCCEEEE
ASTYSVNLNIPGNISQRVTLTMEGEIPDNCALSKDSSGNGFSAKWDGDWNGWSHDMVITG
EEEEEEEEECCCCCCEEEEEEECCCCCCCCEECCCCCCCCEEEEECCCCCCCCCCEEEEE
EGSGSGVIIVSVVDGKNASVKYGTIKIYVNVTKEQKTVSAMSGVKLAGRADDALRINWNI
CCCCCCEEEEEEECCCCCEEEEEEEEEEEEECCCCHHHHHHCCEEEECCCCCEEEEEEEE
NSSASGYIIEQYKNGNWSRIARIADKNTKTYRIEKLTNSTDYRFRIQGFNFDNGTPVYGS
CCCCCCEEEEEECCCCHHHEEEECCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCEEEE
YTYVSGKTNPSKITGVTIGGRAVDALRLNWNKVSGASGYIIEKYENGKWNRIARIADVKT
EEEEECCCCCCEEEEEEECCCEEEEEEEECEEECCCCCEEEEEECCCCCCEEEEEEECEE
RTYRVEGLKASTTYKFRIKAFGFSGSTPLYSTYTYINGRTTPMAVTGVCIGGTAKDALRV
EEEEEECEEECCEEEEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCEEEE
NWNKVSGASGYIIEKYENGNWNRVARIADGNTKTYRVEKLKKNTAYVFRIRAFDFDGNTP
EEEEECCCCCEEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEEEEECCCCCC
LYSDSKYVNGSTNR
CCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Peptidoglycan (N-acetylmuraminic acid and N-acetyl-D-glucosamine Residues); Chitodextrin (N-acetyl-D-glucosamine residues) [C]

Specific reaction: Hydrolysis of beta-linkage between N-acetylmuraminic acid and N-acetyl- D-glucosamine residues in peptidoglycan and between N-acetyl-D-glucosamine residues in chitodextrin [C]

General reaction: O-Glycosyl bond hydrolysis; glycosyltransfer to saccharides other alcohols and H2O [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA