Click here to switch to the map view.

The map label for this gene is licD [H]

Identifier: 238924998

GI number: 238924998

Start: 2525269

End: 2526129

Strand: Reverse

Name: licD [H]

Synonym: EUBREC_2649

Alternate gene names: 238924998

Gene position: 2526129-2525269 (Counterclockwise)

Preceding gene: 238924999

Following gene: 238924997

Centisome position: 73.23

GC content: 34.03

Gene sequence:

>861_bases
ATGAGTAAAGCAAAAGAGTTAACACCAGAACAATTTAGAAAAATGCAATTAACAGAATTGGATATGTTAGTTGAATTTGA
TAAGGTGTGTAGAAAACATAATATTAATTATGTGTTATTTGGAGGAAGTCTGCTTGGAGCAGTTCGACATAAGGGATATA
TTCCATGGGATGATGATGCTGATATAGGTATGCTTAGAGAAGATTATGATACTTTTAAGAAATATGCATCAGAAATGAAT
TCTGAAATATGTTATTTTCAGGATCATGATACCGATCCGGAGTACAGATGGGGATATGGCAAGCTTAGAAGAACTAATAC
TATATATGTCAGAGTAGGACAGGAACATTTGAAAAACAAGACAGGAATTTTTGTGGATGTTTTTCCAATGGATGATGTTC
CATTGAGTACTTTAGGCCAAATTGTGCAGGATAGAAAAGTGTATTGTCTCAGAAAAATATTATGGTCAGAAGTTGCAAGA
GTACAATCGACTGGATTCATGAAGCTGTGGTATAGTGTGTTGGCAAAAATCCCAGTAGAATGGGTATTTAGTCGACTAAA
TAAATATGCTGTTAAGAGTAAAAATATAACACCAAATAGAGTTAGATGTCTGTCATTTCCTGCTACAGGGACGTTATATA
AGAAGAATTCATTGAAGACAAGATATAGTATGCCGAAGAGCTGGTTCACAAATAGAGCAGAATATTTATTTGAGGGTAGG
TTATTGTATAGTTCCAAGGAATATGATGAAGTACTAAAGTATATTTATGGTAAATACATGGAATTGCCTCCAAAGGATAA
AAGGGAGCAACATTCACCATTTTCCAAGATTAAGTTTCAGGATGAGGAGATGATAGTGTGA

Upstream 100 bases:

>100_bases
AGAAGAGAGGATATTATTTAAAAGATGACATCTCTTTGAACATAGCAACTGTCATTGAACGTTTTAGCAAAAGAAAATAC
AAGGAATTGAGTTAATAGAC

Downstream 100 bases:

>100_bases
ATATTATAGAATATTCATCTGATTTGTATGTAGGATTGTATACGTTGCTAAGAGATACATATGATTCAAAGATTAGTAAG
GAAGATTTAGAAAATAATTA

Product: LicD family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 285

Protein sequence:

>286_residues
MSKAKELTPEQFRKMQLTELDMLVEFDKVCRKHNINYVLFGGSLLGAVRHKGYIPWDDDADIGMLREDYDTFKKYASEMN
SEICYFQDHDTDPEYRWGYGKLRRTNTIYVRVGQEHLKNKTGIFVDVFPMDDVPLSTLGQIVQDRKVYCLRKILWSEVAR
VQSTGFMKLWYSVLAKIPVEWVFSRLNKYAVKSKNITPNRVRCLSFPATGTLYKKNSLKTRYSMPKSWFTNRAEYLFEGR
LLYSSKEYDEVLKYIYGKYMELPPKDKREQHSPFSKIKFQDEEMIV

Sequences:

>Translated_286_residues
MSKAKELTPEQFRKMQLTELDMLVEFDKVCRKHNINYVLFGGSLLGAVRHKGYIPWDDDADIGMLREDYDTFKKYASEMN
SEICYFQDHDTDPEYRWGYGKLRRTNTIYVRVGQEHLKNKTGIFVDVFPMDDVPLSTLGQIVQDRKVYCLRKILWSEVAR
VQSTGFMKLWYSVLAKIPVEWVFSRLNKYAVKSKNITPNRVRCLSFPATGTLYKKNSLKTRYSMPKSWFTNRAEYLFEGR
LLYSSKEYDEVLKYIYGKYMELPPKDKREQHSPFSKIKFQDEEMIV
>Mature_285_residues
SKAKELTPEQFRKMQLTELDMLVEFDKVCRKHNINYVLFGGSLLGAVRHKGYIPWDDDADIGMLREDYDTFKKYASEMNS
EICYFQDHDTDPEYRWGYGKLRRTNTIYVRVGQEHLKNKTGIFVDVFPMDDVPLSTLGQIVQDRKVYCLRKILWSEVARV
QSTGFMKLWYSVLAKIPVEWVFSRLNKYAVKSKNITPNRVRCLSFPATGTLYKKNSLKTRYSMPKSWFTNRAEYLFEGRL
LYSSKEYDEVLKYIYGKYMELPPKDKREQHSPFSKIKFQDEEMIV

Specific function: Transfers phosphorylcholine (ChoP) from choline diphosphonucleoside to the lipopolysaccharide (LPS) [H]

COG id: COG3475

COG function: function code M; LPS biosynthesis protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the licD transferase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007074 [H]

Pfam domain/function: PF04991 LicD [H]

EC number: NA

Molecular weight: Translated: 33924; Mature: 33792

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKAKELTPEQFRKMQLTELDMLVEFDKVCRKHNINYVLFGGSLLGAVRHKGYIPWDDDA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCCC
DIGMLREDYDTFKKYASEMNSEICYFQDHDTDPEYRWGYGKLRRTNTIYVRVGQEHLKNK
CCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEECCEEEEEECHHHCCCC
TGIFVDVFPMDDVPLSTLGQIVQDRKVYCLRKILWSEVARVQSTGFMKLWYSVLAKIPVE
CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHH
WVFSRLNKYAVKSKNITPNRVRCLSFPATGTLYKKNSLKTRYSMPKSWFTNRAEYLFEGR
HHHHHHHHHHHCCCCCCCCCEEEEECCCCCCEEECCCCCHHHCCCHHHHHHHHHHHHCCE
LLYSSKEYDEVLKYIYGKYMELPPKDKREQHSPFSKIKFQDEEMIV
EEECCCCHHHHHHHHHHHHCCCCCCCCHHHCCCHHHCEECCCCCCC
>Mature Secondary Structure 
SKAKELTPEQFRKMQLTELDMLVEFDKVCRKHNINYVLFGGSLLGAVRHKGYIPWDDDA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCCC
DIGMLREDYDTFKKYASEMNSEICYFQDHDTDPEYRWGYGKLRRTNTIYVRVGQEHLKNK
CCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEECCEEEEEECHHHCCCC
TGIFVDVFPMDDVPLSTLGQIVQDRKVYCLRKILWSEVARVQSTGFMKLWYSVLAKIPVE
CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHH
WVFSRLNKYAVKSKNITPNRVRCLSFPATGTLYKKNSLKTRYSMPKSWFTNRAEYLFEGR
HHHHHHHHHHHCCCCCCCCCEEEEECCCCCCEEECCCCCHHHCCCHHHHHHHHHHHHCCE
LLYSSKEYDEVLKYIYGKYMELPPKDKREQHSPFSKIKFQDEEMIV
EEECCCCHHHHHHHHHHHHCCCCCCCCHHHCCCHHHCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2479481; 7542800; 10632893 [H]