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The map label for this gene is yfbE [C]

Identifier: 238924967

GI number: 238924967

Start: 2494913

End: 2496154

Strand: Reverse

Name: yfbE [C]

Synonym: EUBREC_2618

Alternate gene names: 238924967

Gene position: 2496154-2494913 (Counterclockwise)

Preceding gene: 238924968

Following gene: 238924966

Centisome position: 72.36

GC content: 45.65

Gene sequence:

>1242_bases
ATGCCGGAAGCGAGGAACATAACTATGGAAAAGAGACAGATTTCATTTTCACCACCTGATATAACAGAGGCAGAGGTGTC
AGCTGTTGCTGATGCACTGCGAAGCGGTTGGATTACAACAGGTCCAAGAACCAAGGAGTTTGAGAAGAGGATTGCTAAGC
TATGCGGCACGGATAAGGCTGTAGCTCTTGGCTCTGCTACTGCGTGTCTTGAGTTGATACTCAGATTCCTGGGAATAGGT
GCAGGTGATGAGGTCATCACAAGCGCATACACATATACTGCATCTGCAAGCCCTGCTGTGCATGTAGGTGCAGCACTTAA
GTTTATAGACGTAGCACCTGATTCATTTGAGATGGATTACGATGCCCTGGAAGCTGCTATTACAGAAAAGACAAAGGTTA
TCGTGCCGGTTGATATTGCAGGTGTGCCTTGCGACTATGACAGGATTTTTGATATTGTGGAGAGAAAGAAGGCTCTTTTT
CATCCGTCAAATGATGTGCAGAGGGCAATCGGACGTGTGATTGTGGCGGCTGACTCAGCTCATGCTTTTGGTGCTTCTTA
CATGAGAGCAGGTGAGCGGATTATGTGTGGCAATGTAGCTGATTTTACAAGCTTTTCATTCCATGCGGTCAAGAATCTGA
CCACAGCAGAGGGAGGAGCACTCACATGGAGACCTATAGAGGGCTTTGATGATGAGTATATCTACAAGCAGTTTATGCTG
CTTTCACTCCACGGACAGACAAAGGATGCATTCCATAAGAATGGTCTGGGCAACTGGGAGTATGATATTGTGGCTCCTTC
GTATAAGTGCAATATGACTGATATCCAGGCTGCTATTGGTCTGGTACAGCTTGACAGATATGAGGGACTTCTCAAGAGGC
GCCGTGATATTATAGAGCGCTATGACGAGGCATTTAAGCCGCTTGGTCTCTTGACTGTGCCTCATTTTACAGACAGGCAT
ACATCGAGCGGACATCTGTATCTGCTTCGCATACCGGGCATCGGCGTGGATAGGCGTAATGCGCTTATAGTGCAGATGGC
GGAGCGAGGTATCGCCACAAATGTGCATTACAAGCCGCTTCCGATGATGACAGCATATAAGAATATGGGCTTTGACATAG
CTGATTTTCCAAATGCTTATCATCAGTATGAGAATGAAATTACACTTCCTCTCAACACAAAGCTTAGCGATGAGGATGTG
GAGTATATAATTAATAATTTATTGGAGATTTTACATGAGTAG

Upstream 100 bases:

>100_bases
GTGGCCTCTGTGGTAAAGACATATCATCCTGACCTGGAAAACTAAATATCTTTTGAAGTGCATAATATAGACTGTAAAAG
CCGGATGTTTGGCATATTTT

Downstream 100 bases:

>100_bases
ATGGAGAACATGGGGAGAGATTCCTACATTCATGAAAAATGATTTTACACTTAAATATTACAGGCATCTGAGCAGAAAGA
GGACAAGCATGGTATTCAAA

Product: spore coat polysaccharide biosynthesis protein SpsC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 412

Protein sequence:

>413_residues
MPEARNITMEKRQISFSPPDITEAEVSAVADALRSGWITTGPRTKEFEKRIAKLCGTDKAVALGSATACLELILRFLGIG
AGDEVITSAYTYTASASPAVHVGAALKFIDVAPDSFEMDYDALEAAITEKTKVIVPVDIAGVPCDYDRIFDIVERKKALF
HPSNDVQRAIGRVIVAADSAHAFGASYMRAGERIMCGNVADFTSFSFHAVKNLTTAEGGALTWRPIEGFDDEYIYKQFML
LSLHGQTKDAFHKNGLGNWEYDIVAPSYKCNMTDIQAAIGLVQLDRYEGLLKRRRDIIERYDEAFKPLGLLTVPHFTDRH
TSSGHLYLLRIPGIGVDRRNALIVQMAERGIATNVHYKPLPMMTAYKNMGFDIADFPNAYHQYENEITLPLNTKLSDEDV
EYIINNLLEILHE

Sequences:

>Translated_413_residues
MPEARNITMEKRQISFSPPDITEAEVSAVADALRSGWITTGPRTKEFEKRIAKLCGTDKAVALGSATACLELILRFLGIG
AGDEVITSAYTYTASASPAVHVGAALKFIDVAPDSFEMDYDALEAAITEKTKVIVPVDIAGVPCDYDRIFDIVERKKALF
HPSNDVQRAIGRVIVAADSAHAFGASYMRAGERIMCGNVADFTSFSFHAVKNLTTAEGGALTWRPIEGFDDEYIYKQFML
LSLHGQTKDAFHKNGLGNWEYDIVAPSYKCNMTDIQAAIGLVQLDRYEGLLKRRRDIIERYDEAFKPLGLLTVPHFTDRH
TSSGHLYLLRIPGIGVDRRNALIVQMAERGIATNVHYKPLPMMTAYKNMGFDIADFPNAYHQYENEITLPLNTKLSDEDV
EYIINNLLEILHE
>Mature_412_residues
PEARNITMEKRQISFSPPDITEAEVSAVADALRSGWITTGPRTKEFEKRIAKLCGTDKAVALGSATACLELILRFLGIGA
GDEVITSAYTYTASASPAVHVGAALKFIDVAPDSFEMDYDALEAAITEKTKVIVPVDIAGVPCDYDRIFDIVERKKALFH
PSNDVQRAIGRVIVAADSAHAFGASYMRAGERIMCGNVADFTSFSFHAVKNLTTAEGGALTWRPIEGFDDEYIYKQFMLL
SLHGQTKDAFHKNGLGNWEYDIVAPSYKCNMTDIQAAIGLVQLDRYEGLLKRRRDIIERYDEAFKPLGLLTVPHFTDRHT
SSGHLYLLRIPGIGVDRRNALIVQMAERGIATNVHYKPLPMMTAYKNMGFDIADFPNAYHQYENEITLPLNTKLSDEDVE
YIINNLLEILHE

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=405, Percent_Identity=34.8148148148148, Blast_Score=210, Evalue=1e-55,
Organism=Escherichia coli, GI2367285, Length=400, Percent_Identity=29.25, Blast_Score=144, Evalue=9e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 45951; Mature: 45820

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEARNITMEKRQISFSPPDITEAEVSAVADALRSGWITTGPRTKEFEKRIAKLCGTDKA
CCCCCCCEEEHHEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCC
VALGSATACLELILRFLGIGAGDEVITSAYTYTASASPAVHVGAALKFIDVAPDSFEMDY
EECCCHHHHHHHHHHHHCCCCCHHHHHHEEEEECCCCCCEEHHHHEEEEECCCCCCCCCH
DALEAAITEKTKVIVPVDIAGVPCDYDRIFDIVERKKALFHPSNDVQRAIGRVIVAADSA
HHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCEEEEEECCC
HAFGASYMRAGERIMCGNVADFTSFSFHAVKNLTTAEGGALTWRPIEGFDDEYIYKQFML
HHHHHHHHHCCCEEEECCCHHHHCCHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHH
LSLHGQTKDAFHKNGLGNWEYDIVAPSYKCNMTDIQAAIGLVQLDRYEGLLKRRRDIIER
EEECCCCHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YDEAFKPLGLLTVPHFTDRHTSSGHLYLLRIPGIGVDRRNALIVQMAERGIATNVHYKPL
HHHHHCCCCEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEHHCCCCCCCCCCCC
PMMTAYKNMGFDIADFPNAYHQYENEITLPLNTKLSDEDVEYIINNLLEILHE
CHHHHHHHCCCCHHHCCHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PEARNITMEKRQISFSPPDITEAEVSAVADALRSGWITTGPRTKEFEKRIAKLCGTDKA
CCCCCCEEEHHEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCC
VALGSATACLELILRFLGIGAGDEVITSAYTYTASASPAVHVGAALKFIDVAPDSFEMDY
EECCCHHHHHHHHHHHHCCCCCHHHHHHEEEEECCCCCCEEHHHHEEEEECCCCCCCCCH
DALEAAITEKTKVIVPVDIAGVPCDYDRIFDIVERKKALFHPSNDVQRAIGRVIVAADSA
HHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCEEEEEECCC
HAFGASYMRAGERIMCGNVADFTSFSFHAVKNLTTAEGGALTWRPIEGFDDEYIYKQFML
HHHHHHHHHCCCEEEECCCHHHHCCHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHH
LSLHGQTKDAFHKNGLGNWEYDIVAPSYKCNMTDIQAAIGLVQLDRYEGLLKRRRDIIER
EEECCCCHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YDEAFKPLGLLTVPHFTDRHTSSGHLYLLRIPGIGVDRRNALIVQMAERGIATNVHYKPL
HHHHHCCCCEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEHHCCCCCCCCCCCC
PMMTAYKNMGFDIADFPNAYHQYENEITLPLNTKLSDEDVEYIINNLLEILHE
CHHHHHHHCCCCHHHCCHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]