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The map label for this gene is yagH [C]

Identifier: 238924927

GI number: 238924927

Start: 2451322

End: 2452818

Strand: Reverse

Name: yagH [C]

Synonym: EUBREC_2578

Alternate gene names: 238924927

Gene position: 2452818-2451322 (Counterclockwise)

Preceding gene: 238924929

Following gene: 238924926

Centisome position: 71.1

GC content: 43.69

Gene sequence:

>1497_bases
ATGAATGTAAATCCTATAACAAGATTGGATTATCCGGATCCGGACGTGATCCGCGTAGAAGACACCTATTATATGGTATC
CACAACCATGCACTTTATGCCGGGCTGTGAGATTCTGCAGTCTTTTGATCTGGTGCACTGGGAGCATGTGACTTATGTCT
ATGAGACGTTGGATCATACGGATGCGCAGCAACTGAAAAGCGGTCATAATATTTACGGACAGGGCATGTGGGCAGCTTCC
CTGCGTTATCATGAAGGCCGATTTTATATTTGCTTTGTGGCAAATGATACCCGTAAGACTTATTTGTATACTTCGGAAAA
AATAGATGGTCCATGGAAAAAGCAGCTGATAGAAGGCTTTTATCATGACGGCTCTTTATTATTTGATGAGGATGGCAGAA
ACTATATTGTATATGGAAATGATGAAATCTGGATTACAGAATTGAATGAAGATTTGACTGCACCAAAGAAGGACGGATTA
CATCGTCTTTTAGTCAGTGATCATAAGAACCCGGAGCTAGGCTATGAGGGTTCTCATATTCAAAAAATAAACGGCTATTA
TTATATTTTTCTGGTTCATTCCCTGAGAGACCGCTGGATGCGGACGGAAGCATGCTTTTACAGTGATTCTCTGGAAGGAG
AATTCACTGGTGGAGATGTACTTTGTGATGATCGTGGATATTGTGGACAGGGCGTGGCACAGGGAGGAATAGTGGATACG
CCGGATGGAAAGTGGTATGCAATGCTGTTTCAGGATTCCGGAGCAGTTGGACGGATTCCTATTCTGCTTCCGGTTACCTG
GAAGGATCATTTTCCGGTTTTTGGACAGAACGGACATGTGCCGGAAGAAATAGAGGTTCACAGTACCAGACCAGGATATA
TTTATCAGCCATTAGTGGGAAGTGATGATTTCTGTAATGGGCTGCTTCCGCGCTGGCAGTTTAATCATGATCCAGATCCA
CGGTATTATCATCTGGATGCATCGCAGGGAACCTATACAATTACAACACGGGAAGTTTGTACAGAGCTTACACAGGCAGT
AAATACGCTTACGCAAAGGATGAGTTATCCGTCCTGCGCAGCTGAGGTTACTGTTGATGCTTCTGCATTGAAAGAGGGCG
ATGTCGCAGGTTTGTGTGCGTTGCAGGGCTGTTATGCTGCAGTTGGCATTACAAAACATCATGGAAAATATGAAGTCCTT
ATGCTGGATAAAAAAGAAGATGGTATATTGGATATGACGGAAGGAACTGTTGTTGAATCACACCAGATGGATTTTCGTCT
TGAAGCAGATTTCTGTAACATGAAGGATGAAGCACGCTGCTATTACCGGGTAAATAAGGGAGACTGGCTACCCATCGGAA
CCGTGCATAAGCTGTACTTCAAACTGGATCATTTTACTGGTTGCCGGTTTGGTCTGTTCTGCTATGCGGCAGAGGAAACA
GGAGGAAGTGCCTGCTTCCGGGATTTTAAGTATTATGATGTTGATGAAATCTCATAA

Upstream 100 bases:

>100_bases
CCTGGGGCAAGGATGCAAAGGAGGCCGTCCACAATGCGGTGGTTCTTGAATAGAATAGAACAAAGAAAGAATATGGAGAT
AAAATAGAAAGGAATAAACA

Downstream 100 bases:

>100_bases
AGATAGAACTGCATAAAATAAGTGTCGGAATTTACTCAAATTCTGTAAAAGATTCAGATTGCAGAAAAATCCGGGCATAG
TATCAATGAATGATATTGCC

Product: CHU large protein; candidate polyfunctional acetylxylan esterase/b-xylosidase/A-L-arabinofuranosidase, CBM9 module, glycoside hydrolase family 43 protein and carbohydrate esterase family 6 protein

Products: NA

Alternate protein names: 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase [H]

Number of amino acids: Translated: 498; Mature: 498

Protein sequence:

>498_residues
MNVNPITRLDYPDPDVIRVEDTYYMVSTTMHFMPGCEILQSFDLVHWEHVTYVYETLDHTDAQQLKSGHNIYGQGMWAAS
LRYHEGRFYICFVANDTRKTYLYTSEKIDGPWKKQLIEGFYHDGSLLFDEDGRNYIVYGNDEIWITELNEDLTAPKKDGL
HRLLVSDHKNPELGYEGSHIQKINGYYYIFLVHSLRDRWMRTEACFYSDSLEGEFTGGDVLCDDRGYCGQGVAQGGIVDT
PDGKWYAMLFQDSGAVGRIPILLPVTWKDHFPVFGQNGHVPEEIEVHSTRPGYIYQPLVGSDDFCNGLLPRWQFNHDPDP
RYYHLDASQGTYTITTREVCTELTQAVNTLTQRMSYPSCAAEVTVDASALKEGDVAGLCALQGCYAAVGITKHHGKYEVL
MLDKKEDGILDMTEGTVVESHQMDFRLEADFCNMKDEARCYYRVNKGDWLPIGTVHKLYFKLDHFTGCRFGLFCYAAEET
GGSACFRDFKYYDVDEIS

Sequences:

>Translated_498_residues
MNVNPITRLDYPDPDVIRVEDTYYMVSTTMHFMPGCEILQSFDLVHWEHVTYVYETLDHTDAQQLKSGHNIYGQGMWAAS
LRYHEGRFYICFVANDTRKTYLYTSEKIDGPWKKQLIEGFYHDGSLLFDEDGRNYIVYGNDEIWITELNEDLTAPKKDGL
HRLLVSDHKNPELGYEGSHIQKINGYYYIFLVHSLRDRWMRTEACFYSDSLEGEFTGGDVLCDDRGYCGQGVAQGGIVDT
PDGKWYAMLFQDSGAVGRIPILLPVTWKDHFPVFGQNGHVPEEIEVHSTRPGYIYQPLVGSDDFCNGLLPRWQFNHDPDP
RYYHLDASQGTYTITTREVCTELTQAVNTLTQRMSYPSCAAEVTVDASALKEGDVAGLCALQGCYAAVGITKHHGKYEVL
MLDKKEDGILDMTEGTVVESHQMDFRLEADFCNMKDEARCYYRVNKGDWLPIGTVHKLYFKLDHFTGCRFGLFCYAAEET
GGSACFRDFKYYDVDEIS
>Mature_498_residues
MNVNPITRLDYPDPDVIRVEDTYYMVSTTMHFMPGCEILQSFDLVHWEHVTYVYETLDHTDAQQLKSGHNIYGQGMWAAS
LRYHEGRFYICFVANDTRKTYLYTSEKIDGPWKKQLIEGFYHDGSLLFDEDGRNYIVYGNDEIWITELNEDLTAPKKDGL
HRLLVSDHKNPELGYEGSHIQKINGYYYIFLVHSLRDRWMRTEACFYSDSLEGEFTGGDVLCDDRGYCGQGVAQGGIVDT
PDGKWYAMLFQDSGAVGRIPILLPVTWKDHFPVFGQNGHVPEEIEVHSTRPGYIYQPLVGSDDFCNGLLPRWQFNHDPDP
RYYHLDASQGTYTITTREVCTELTQAVNTLTQRMSYPSCAAEVTVDASALKEGDVAGLCALQGCYAAVGITKHHGKYEVL
MLDKKEDGILDMTEGTVVESHQMDFRLEADFCNMKDEARCYYRVNKGDWLPIGTVHKLYFKLDHFTGCRFGLFCYAAEET
GGSACFRDFKYYDVDEIS

Specific function: Unknown

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

Organism=Escherichia coli, GI1786467, Length=563, Percent_Identity=22.202486678508, Blast_Score=81, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008985
- InterPro:   IPR013320
- InterPro:   IPR006710 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.37 [H]

Molecular weight: Translated: 57006; Mature: 57006

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVNPITRLDYPDPDVIRVEDTYYMVSTTMHFMPGCEILQSFDLVHWEHVTYVYETLDHT
CCCCCCEECCCCCCCEEEEECCEEEEEEHHHHCCCHHHHHHCCCEEEHHHHHEEHHHCCC
DAQQLKSGHNIYGQGMWAASLRYHEGRFYICFVANDTRKTYLYTSEKIDGPWKKQLIEGF
CHHHHHCCCCEEECCEEEEEEEEECCCEEEEEEECCCCEEEEEECCCCCCHHHHHHHHHH
YHDGSLLFDEDGRNYIVYGNDEIWITELNEDLTAPKKDGLHRLLVSDHKNPELGYEGSHI
CCCCCEEEECCCCEEEEECCCEEEEEECCCCCCCCCCCCCEEHEECCCCCCCCCCCCCCE
QKINGYYYIFLVHSLRDRWMRTEACFYSDSLEGEFTGGDVLCDDRGYCGQGVAQGGIVDT
EEECCEEEEEEEEHHHHHHHHHHHEEECCCCCCEECCCCEEECCCCCCCCCCCCCCEEEC
PDGKWYAMLFQDSGAVGRIPILLPVTWKDHFPVFGQNGHVPEEIEVHSTRPGYIYQPLVG
CCCCEEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCEEEECCCC
SDDFCNGLLPRWQFNHDPDPRYYHLDASQGTYTITTREVCTELTQAVNTLTQRMSYPSCA
CCHHHHCCCCCCCCCCCCCCCEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCC
AEVTVDASALKEGDVAGLCALQGCYAAVGITKHHGKYEVLMLDKKEDGILDMTEGTVVES
EEEEECHHHHCCCCCHHHHHHHHHHHEEEEEECCCEEEEEEEECCCCCEEEECCCCEEEC
HQMDFRLEADFCNMKDEARCYYRVNKGDWLPIGTVHKLYFKLDHFTGCRFGLFCYAAEET
CCCCEEEECCCCCCCCCCEEEEEECCCCEEECCHHEEEEEEECCCCCCEEEEEEEEECCC
GGSACFRDFKYYDVDEIS
CCHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MNVNPITRLDYPDPDVIRVEDTYYMVSTTMHFMPGCEILQSFDLVHWEHVTYVYETLDHT
CCCCCCEECCCCCCCEEEEECCEEEEEEHHHHCCCHHHHHHCCCEEEHHHHHEEHHHCCC
DAQQLKSGHNIYGQGMWAASLRYHEGRFYICFVANDTRKTYLYTSEKIDGPWKKQLIEGF
CHHHHHCCCCEEECCEEEEEEEEECCCEEEEEEECCCCEEEEEECCCCCCHHHHHHHHHH
YHDGSLLFDEDGRNYIVYGNDEIWITELNEDLTAPKKDGLHRLLVSDHKNPELGYEGSHI
CCCCCEEEECCCCEEEEECCCEEEEEECCCCCCCCCCCCCEEHEECCCCCCCCCCCCCCE
QKINGYYYIFLVHSLRDRWMRTEACFYSDSLEGEFTGGDVLCDDRGYCGQGVAQGGIVDT
EEECCEEEEEEEEHHHHHHHHHHHEEECCCCCCEECCCCEEECCCCCCCCCCCCCCEEEC
PDGKWYAMLFQDSGAVGRIPILLPVTWKDHFPVFGQNGHVPEEIEVHSTRPGYIYQPLVG
CCCCEEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCEEEECCCC
SDDFCNGLLPRWQFNHDPDPRYYHLDASQGTYTITTREVCTELTQAVNTLTQRMSYPSCA
CCHHHHCCCCCCCCCCCCCCCEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCC
AEVTVDASALKEGDVAGLCALQGCYAAVGITKHHGKYEVLMLDKKEDGILDMTEGTVVES
EEEEECHHHHCCCCCHHHHHHHHHHHEEEEEECCCEEEEEEEECCCCCEEEECCCCEEEC
HQMDFRLEADFCNMKDEARCYYRVNKGDWLPIGTVHKLYFKLDHFTGCRFGLFCYAAEET
CCCCEEEECCCCCCCCCCEEEEEECCCCEEECCHHEEEEEEECCCCCCEEEEEEEEECCC
GGSACFRDFKYYDVDEIS
CCHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA