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The map label for this gene is yddV [C]

Identifier: 238924813

GI number: 238924813

Start: 2331367

End: 2332821

Strand: Reverse

Name: yddV [C]

Synonym: EUBREC_2464

Alternate gene names: 238924813

Gene position: 2332821-2331367 (Counterclockwise)

Preceding gene: 238924814

Following gene: 238924811

Centisome position: 67.62

GC content: 41.65

Gene sequence:

>1455_bases
ATGGGTATATTGCAAAAGGCAGACAGATGTATGGATGAGGCAGCAGCCTTATTTGGCGAGAATAAGCTTTTTTTGGCAGA
GAATAAGGCACAGGAGACAGCCGGTCTTTATAAGAGCTGTGGCGCATATGAGCAGATGGCAAAGACTGTCAATTTTATGG
GAGTCATATATGCATCTATTGGAGACTTAAGCATGTCAATTGACTGCTACCTAGAGGCTATGGATGTAGCTGTGGAGCAG
GGCTCAACAGAGATAATCATGCTTGTAAACAATAATATAGGCTCACTCTATATGGAGCTTGGATTGTATGAAAAGGCTAT
CAGATATTTCAACGAAGCACTGGAGCTGTGCAAGCCACCGCTGCATGGAGAGAGGGATAGCTATTATCAGGAGCTTCTCA
TGCTTCATCTGAATCTGTGCATCTCATACACAGGAATTAACGAGTTTGAAAAGGCAGAAAAGCATCTTTCTGATGCGATA
CTCTTTAATGAGATAGCTGGCAGTGATAAAAACAGATTTCTGATAGATATGTCACAGGCACATATGCTATGGAAGATGGG
AAATGAGGATGAGGTCAGAGATCATGTGGAAGAGCTGGTTGAGGGTGCGATAAACAATATCAATTCTGCCAATTATGTGC
TTGAGATACTAAGCCTTTGCAATCTATTTATGAATATGGGGGAGTTCGATGCATGGAAAAAGGTTATTGTGGAGTATGAA
CGCTTTGCTATTGAAACAGAAAATTTGTTTTTCCAGAAGACCTGTGTCAAGATGTGGATGAAATATGAGAGCGCCATGGG
TGATACAGAGGCGTACAACAAGCTGTGCGTATATTACGCAAATCTCCACTCTATGCAGGTGAAGGAGCAGATAAAGCGTC
TTGGTGATACAATCGACCTTAAGCTTCAGCTTCAGGAGACTGAGTATGAGCGCCGTAAGGCAGTCAGACTCAACTACACA
GATATGCTTACAGGCATGGGCAATAAGTTCAAGATGCGAAACGATTTTGAAAAGCTTGTGAGCAAAAATCAGGATTCAGA
TGGTGCAGGAATCACGTTTGGAGTAGTGGATATAGATTTCTTCAAGTCATTTAACAGAAACAGTGGCAGAGTCACCGGTG
ATGCAGTGCTAAAAGAATTGTCATCCATAATAAATGAGAGCATCAAAGATAAGGGAATGGGGTATCATTTCTATGGTGAT
GAATTCTACATAATCCTGCAGGAAACGGATGAGGATATCATTAAAAATATAGCCGAGCATATAAGACTTGAGCTTGCCAA
AAAACAGATACTTCATGAGAGCTCTAAGGTGGATGAGTATCTGACTGTATCACAGGCATATGTTACCGCCCCAGATGTAA
AGGTGCCGGATGAGTTTTCAAAGCTGTTCAAGACGGTGGATGAAGTGCTCAATGATGTGAAGGAAAAGGGTAGAAATGCA
TATAAGATAGTCTGA

Upstream 100 bases:

>100_bases
AGGCTCAGGTTGTAGCAAAGGATGCGAAACTGAAACAGGTTGGATATAAGCAGTATCTTGCTGAGAAATAGATTGTATTG
TCATCTATAGGAGGGTTTTT

Downstream 100 bases:

>100_bases
TGCTTTAAGTGTATAAGACAACTATAAAATGACACGCAGCGTAAAACGTTGCGTGTCATTTTTGATGGATCTATATATAC
AGTTATAGTTATATTTGTAC

Product: sensory transduction system regulatory protein

Products: NA

Alternate protein names: Response Regulator Receiver Modulated Diguanylate Cyclase; GGDEF Domain-Containing Protein; GGDEF Domain Protein; Diguanylate Cyclase With PAS/PAC Sensor; GGDEF Family Protein; Diguanylate Cyclase With GAF Sensor; Response Regulator; Diguanylate Cyclase With PAS/PAC And GAF Sensors; Sensory Transduction System Regulatory Protein; Serine/Threonine Protein Kinase; Response Regulator Protein; Sensory Box/GGDEF Family Protein; 7TM Domain Sensor Diguanylate Cyclase; Response Regulator Receiver Domain Protein; Diguanylate Cyclase With Beta Propeller Sensor; Sensory Box Protein; Stalked-Cell Differentiation Controlling Protein; Sensory Box; Two-Component Response Regulator; GGDEF/TPR Repeat Domain-Containing Protein; Diguanylate Cyclase With Pas/Pac Sensor; Diguanylate Cyclase Domain Protein; Regulatory Components Of Sensory Transduction System; GGDEF Domain-Containing Diguanylate Cyclase; Diguanylate Cyclase/Phosphodiesterase; Cellulose Synthesis Regulatory Protein; Conserved Protein; AbfX GGDEF Domain Protein; Response Regulator/GGDEF Domain-Containing Protein; PAS/PAC Sensor-Containg Diguanylate Cyclase; Response Regulator PleD; Virulence-Mediating Protein VirC; Two Component Diguanylate Cyclase; Signaling Protein; Response Regulator Receiver Diguanylate Cyclase; Signal Transduction Response Regulator; Chase2 Sensor-Containing Diguanylate Cyclase; Diguanylate Cyclase/Phosphodiesterase With GAF Sensor; GGDEF/Response Regulator Receiver Domain-Containing Protein; HmsT Protein; PAS Fold Family; Response Regulator Receiver Protein; Ggdef Domain Protein

Number of amino acids: Translated: 484; Mature: 483

Protein sequence:

>484_residues
MGILQKADRCMDEAAALFGENKLFLAENKAQETAGLYKSCGAYEQMAKTVNFMGVIYASIGDLSMSIDCYLEAMDVAVEQ
GSTEIIMLVNNNIGSLYMELGLYEKAIRYFNEALELCKPPLHGERDSYYQELLMLHLNLCISYTGINEFEKAEKHLSDAI
LFNEIAGSDKNRFLIDMSQAHMLWKMGNEDEVRDHVEELVEGAINNINSANYVLEILSLCNLFMNMGEFDAWKKVIVEYE
RFAIETENLFFQKTCVKMWMKYESAMGDTEAYNKLCVYYANLHSMQVKEQIKRLGDTIDLKLQLQETEYERRKAVRLNYT
DMLTGMGNKFKMRNDFEKLVSKNQDSDGAGITFGVVDIDFFKSFNRNSGRVTGDAVLKELSSIINESIKDKGMGYHFYGD
EFYIILQETDEDIIKNIAEHIRLELAKKQILHESSKVDEYLTVSQAYVTAPDVKVPDEFSKLFKTVDEVLNDVKEKGRNA
YKIV

Sequences:

>Translated_484_residues
MGILQKADRCMDEAAALFGENKLFLAENKAQETAGLYKSCGAYEQMAKTVNFMGVIYASIGDLSMSIDCYLEAMDVAVEQ
GSTEIIMLVNNNIGSLYMELGLYEKAIRYFNEALELCKPPLHGERDSYYQELLMLHLNLCISYTGINEFEKAEKHLSDAI
LFNEIAGSDKNRFLIDMSQAHMLWKMGNEDEVRDHVEELVEGAINNINSANYVLEILSLCNLFMNMGEFDAWKKVIVEYE
RFAIETENLFFQKTCVKMWMKYESAMGDTEAYNKLCVYYANLHSMQVKEQIKRLGDTIDLKLQLQETEYERRKAVRLNYT
DMLTGMGNKFKMRNDFEKLVSKNQDSDGAGITFGVVDIDFFKSFNRNSGRVTGDAVLKELSSIINESIKDKGMGYHFYGD
EFYIILQETDEDIIKNIAEHIRLELAKKQILHESSKVDEYLTVSQAYVTAPDVKVPDEFSKLFKTVDEVLNDVKEKGRNA
YKIV
>Mature_483_residues
GILQKADRCMDEAAALFGENKLFLAENKAQETAGLYKSCGAYEQMAKTVNFMGVIYASIGDLSMSIDCYLEAMDVAVEQG
STEIIMLVNNNIGSLYMELGLYEKAIRYFNEALELCKPPLHGERDSYYQELLMLHLNLCISYTGINEFEKAEKHLSDAIL
FNEIAGSDKNRFLIDMSQAHMLWKMGNEDEVRDHVEELVEGAINNINSANYVLEILSLCNLFMNMGEFDAWKKVIVEYER
FAIETENLFFQKTCVKMWMKYESAMGDTEAYNKLCVYYANLHSMQVKEQIKRLGDTIDLKLQLQETEYERRKAVRLNYTD
MLTGMGNKFKMRNDFEKLVSKNQDSDGAGITFGVVDIDFFKSFNRNSGRVTGDAVLKELSSIINESIKDKGMGYHFYGDE
FYIILQETDEDIIKNIAEHIRLELAKKQILHESSKVDEYLTVSQAYVTAPDVKVPDEFSKLFKTVDEVLNDVKEKGRNAY
KIV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693134, Length=159, Percent_Identity=27.0440251572327, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55485; Mature: 55354

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGILQKADRCMDEAAALFGENKLFLAENKAQETAGLYKSCGAYEQMAKTVNFMGVIYASI
CCCHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
GDLSMSIDCYLEAMDVAVEQGSTEIIMLVNNNIGSLYMELGLYEKAIRYFNEALELCKPP
CCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
LHGERDSYYQELLMLHLNLCISYTGINEFEKAEKHLSDAILFNEIAGSDKNRFLIDMSQA
CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHH
HMLWKMGNEDEVRDHVEELVEGAINNINSANYVLEILSLCNLFMNMGEFDAWKKVIVEYE
HHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
RFAIETENLFFQKTCVKMWMKYESAMGDTEAYNKLCVYYANLHSMQVKEQIKRLGDTIDL
HHEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
KLQLQETEYERRKAVRLNYTDMLTGMGNKFKMRNDFEKLVSKNQDSDGAGITFGVVDIDF
EEEEHHHHHHHHHHEECCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEHHH
FKSFNRNSGRVTGDAVLKELSSIINESIKDKGMGYHFYGDEFYIILQETDEDIIKNIAEH
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCHHHHHHHHHH
IRLELAKKQILHESSKVDEYLTVSQAYVTAPDVKVPDEFSKLFKTVDEVLNDVKEKGRNA
HHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
YKIV
CCCC
>Mature Secondary Structure 
GILQKADRCMDEAAALFGENKLFLAENKAQETAGLYKSCGAYEQMAKTVNFMGVIYASI
CCHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
GDLSMSIDCYLEAMDVAVEQGSTEIIMLVNNNIGSLYMELGLYEKAIRYFNEALELCKPP
CCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
LHGERDSYYQELLMLHLNLCISYTGINEFEKAEKHLSDAILFNEIAGSDKNRFLIDMSQA
CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHH
HMLWKMGNEDEVRDHVEELVEGAINNINSANYVLEILSLCNLFMNMGEFDAWKKVIVEYE
HHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
RFAIETENLFFQKTCVKMWMKYESAMGDTEAYNKLCVYYANLHSMQVKEQIKRLGDTIDL
HHEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
KLQLQETEYERRKAVRLNYTDMLTGMGNKFKMRNDFEKLVSKNQDSDGAGITFGVVDIDF
EEEEHHHHHHHHHHEECCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEHHH
FKSFNRNSGRVTGDAVLKELSSIINESIKDKGMGYHFYGDEFYIILQETDEDIIKNIAEH
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCHHHHHHHHHH
IRLELAKKQILHESSKVDEYLTVSQAYVTAPDVKVPDEFSKLFKTVDEVLNDVKEKGRNA
HHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
YKIV
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA