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The map label for this gene is rne [H]

Identifier: 238924054

GI number: 238924054

Start: 1575603

End: 1576811

Strand: Direct

Name: rne [H]

Synonym: EUBREC_1692

Alternate gene names: 238924054

Gene position: 1575603-1576811 (Clockwise)

Preceding gene: 238924053

Following gene: 238924055

Centisome position: 45.67

GC content: 40.12

Gene sequence:

>1209_bases
ATGAACAGAATTATTCTGACTAAAACAGTAAAAAATAATAAGACATACACAGTGTATGCACTGATGGACGAAAACGGAAA
TTATAAGGATTTCCAGCTCCTTCCCGAGAAGGATACAATAATAAACAATATATACGCGGCAAGGGTAAATAAGATACTGC
CGGGCATAAATGCGGCATTTGTGACCATTGCGCAGAATAAAAGCTGTTATCTGTCGCTAAATGATGCAAAAAATCCTGTA
TACACAAACAAAAAATCAAAAAAAGAAGGATTGTGTGAGGGCGATGAGATACTTGTGCAGGTCATAAAGGATGCGCTAAA
GACAAAGGATCCGGTGGTCACAACAAAGCTTTCTATATTCGGAAGCAATGTGATTCTCACCAATTTTGATACACAGATAG
GTGTTTCATCGAAGCTGGATAAGGAAAGGGCGGCTCTTTTACGTAAGGCTGTGCTTTTAAGTTGTGCAGACCACGAAAAA
GAGGGCTATGGCATCATAGTCAGAACCAATGCCAAAAATGTGGAGGATAAAGCGGTTTCGCAAGATGCATATTCGGTAGC
ACAGAAATATGATCAGATAATAAAAAAGGCACCGCATCAGGCACTCTATTCATGCGTATATCATGGGATGAGCGACTATC
TGCTTTTAATGAAGACAATTGATTTTGCCACGGTGGAGTGGATAAAGACTGACTGCGATGACATATATGACAGTCTTCTT
ACAGAGTACGGCATATATGACCATGCTCCTGAAAAGATAATGCGATATGACGATTCAGCTATCAGCATGTCAACACTCTA
TGGCATAAGAGGGCTGATTGATAATCTGACCTCGCGCAGGGTATGGCTTGACTGTGGTGGCAACATCATAATAGAACAGC
TTGAGACACTTACCTTTATAGATGTAAACAGTGCAAAGAATATATCGTCGGGGAGCAATAGTATATTAAAGACCAATATG
GAGGCCGCAAAGGAGATAGCCAGGCAGCTTCGGCTCAGAAATATCTCCGGCATGATAATAATTGATTTTATCAATATGAA
GTCTGAGGCATCAAAGGATACGCTTATTGAAGAGCTCAAACGGTATATAAAGGACGATAATACAGTCTGTACCTTTGTGG
ATATCACGAAGCTTGGACTGGTGGAGCTGACCAGAAAAAAGGTCCACAAATCTCTTAAACAAATTTTAGAAAAAACACTT
GACGAATAG

Upstream 100 bases:

>100_bases
ACAATCCGCTTGCCATACAAATCCACAGGCAGGAAGTGTATGCAAGAAAAGACGATGGAACACTCATTTGTCTGCTTGAC
ATGGGAGAAGAAATCTCATA

Downstream 100 bases:

>100_bases
ATAGCTCTATGCTAATATACTGGAGTATGCCGCACAGTGAGGTATAAGTTTGCGACTTTCGCAACACCGTAACTGGCGAG
TAATGATAAATAGGAGGTGC

Product: ribonuclease G and E

Products: NA

Alternate protein names: RNase E [H]

Number of amino acids: Translated: 402; Mature: 402

Protein sequence:

>402_residues
MNRIILTKTVKNNKTYTVYALMDENGNYKDFQLLPEKDTIINNIYAARVNKILPGINAAFVTIAQNKSCYLSLNDAKNPV
YTNKKSKKEGLCEGDEILVQVIKDALKTKDPVVTTKLSIFGSNVILTNFDTQIGVSSKLDKERAALLRKAVLLSCADHEK
EGYGIIVRTNAKNVEDKAVSQDAYSVAQKYDQIIKKAPHQALYSCVYHGMSDYLLLMKTIDFATVEWIKTDCDDIYDSLL
TEYGIYDHAPEKIMRYDDSAISMSTLYGIRGLIDNLTSRRVWLDCGGNIIIEQLETLTFIDVNSAKNISSGSNSILKTNM
EAAKEIARQLRLRNISGMIIIDFINMKSEASKDTLIEELKRYIKDDNTVCTFVDITKLGLVELTRKKVHKSLKQILEKTL
DE

Sequences:

>Translated_402_residues
MNRIILTKTVKNNKTYTVYALMDENGNYKDFQLLPEKDTIINNIYAARVNKILPGINAAFVTIAQNKSCYLSLNDAKNPV
YTNKKSKKEGLCEGDEILVQVIKDALKTKDPVVTTKLSIFGSNVILTNFDTQIGVSSKLDKERAALLRKAVLLSCADHEK
EGYGIIVRTNAKNVEDKAVSQDAYSVAQKYDQIIKKAPHQALYSCVYHGMSDYLLLMKTIDFATVEWIKTDCDDIYDSLL
TEYGIYDHAPEKIMRYDDSAISMSTLYGIRGLIDNLTSRRVWLDCGGNIIIEQLETLTFIDVNSAKNISSGSNSILKTNM
EAAKEIARQLRLRNISGMIIIDFINMKSEASKDTLIEELKRYIKDDNTVCTFVDITKLGLVELTRKKVHKSLKQILEKTL
DE
>Mature_402_residues
MNRIILTKTVKNNKTYTVYALMDENGNYKDFQLLPEKDTIINNIYAARVNKILPGINAAFVTIAQNKSCYLSLNDAKNPV
YTNKKSKKEGLCEGDEILVQVIKDALKTKDPVVTTKLSIFGSNVILTNFDTQIGVSSKLDKERAALLRKAVLLSCADHEK
EGYGIIVRTNAKNVEDKAVSQDAYSVAQKYDQIIKKAPHQALYSCVYHGMSDYLLLMKTIDFATVEWIKTDCDDIYDSLL
TEYGIYDHAPEKIMRYDDSAISMSTLYGIRGLIDNLTSRRVWLDCGGNIIIEQLETLTFIDVNSAKNISSGSNSILKTNM
EAAKEIARQLRLRNISGMIIIDFINMKSEASKDTLIEELKRYIKDDNTVCTFVDITKLGLVELTRKKVHKSLKQILEKTL
DE

Specific function: Involved In The Processing Of The 5'End Of 16s Rrna. Could Be Involved In Chromosome Segregation And Cell Division. It May Be One Of The Components Of The Cytoplasmic Axial Filaments Bundles Or Merely Regulate The Formation Of This Structure. [C]

COG id: COG1530

COG function: function code J; Ribonucleases G and E

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Escherichia coli, GI87082235, Length=372, Percent_Identity=29.0322580645161, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI1787325, Length=370, Percent_Identity=28.9189189189189, Blast_Score=139, Evalue=4e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR019307
- InterPro:   IPR022967
- InterPro:   IPR004659 [H]

Pfam domain/function: PF10150 RNase_E_G; PF00575 S1 [H]

EC number: =3.1.26.12 [H]

Molecular weight: Translated: 45361; Mature: 45361

Theoretical pI: Translated: 8.02; Mature: 8.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRIILTKTVKNNKTYTVYALMDENGNYKDFQLLPEKDTIINNIYAARVNKILPGINAAF
CCCEEEEEEECCCCEEEEEEEEECCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCEEE
VTIAQNKSCYLSLNDAKNPVYTNKKSKKEGLCEGDEILVQVIKDALKTKDPVVTTKLSIF
EEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEE
GSNVILTNFDTQIGVSSKLDKERAALLRKAVLLSCADHEKEGYGIIVRTNAKNVEDKAVS
CCCEEEEECCCCCCCCHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHH
QDAYSVAQKYDQIIKKAPHQALYSCVYHGMSDYLLLMKTIDFATVEWIKTDCDDIYDSLL
HHHHHHHHHHHHHHHHCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
TEYGIYDHAPEKIMRYDDSAISMSTLYGIRGLIDNLTSRRVWLDCGGNIIIEQLETLTFI
HHCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHEEEE
DVNSAKNISSGSNSILKTNMEAAKEIARQLRLRNISGMIIIDFINMKSEASKDTLIEELK
ECCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHH
RYIKDDNTVCTFVDITKLGLVELTRKKVHKSLKQILEKTLDE
HHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNRIILTKTVKNNKTYTVYALMDENGNYKDFQLLPEKDTIINNIYAARVNKILPGINAAF
CCCEEEEEEECCCCEEEEEEEEECCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCEEE
VTIAQNKSCYLSLNDAKNPVYTNKKSKKEGLCEGDEILVQVIKDALKTKDPVVTTKLSIF
EEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEE
GSNVILTNFDTQIGVSSKLDKERAALLRKAVLLSCADHEKEGYGIIVRTNAKNVEDKAVS
CCCEEEEECCCCCCCCHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHH
QDAYSVAQKYDQIIKKAPHQALYSCVYHGMSDYLLLMKTIDFATVEWIKTDCDDIYDSLL
HHHHHHHHHHHHHHHHCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
TEYGIYDHAPEKIMRYDDSAISMSTLYGIRGLIDNLTSRRVWLDCGGNIIIEQLETLTFI
HHCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHEEEE
DVNSAKNISSGSNSILKTNMEAAKEIARQLRLRNISGMIIIDFINMKSEASKDTLIEELK
ECCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHH
RYIKDDNTVCTFVDITKLGLVELTRKKVHKSLKQILEKTLDE
HHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]