| Definition | Eubacterium rectale ATCC 33656, complete genome. |
|---|---|
| Accession | NC_012781 |
| Length | 3,449,685 |
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The map label for this gene is yoaA [C]
Identifier: 238923888
GI number: 238923888
Start: 1395144
End: 1397612
Strand: Direct
Name: yoaA [C]
Synonym: EUBREC_1516
Alternate gene names: 238923888
Gene position: 1395144-1397612 (Clockwise)
Preceding gene: 238923887
Following gene: 238923890
Centisome position: 40.44
GC content: 43.18
Gene sequence:
>2469_bases ATGTTCAGTGTATTAAAAATGTTTGGAGTTAGACTGAAAATATTGCCGGAACACAAAACCGGTAACATAATCCGGAATAT GCAGGGAGAGTACATGACAGAAGCTGGAAATAACTATAGTGAAAAGAAAACACAATTACATATTTCGGTCAGAAACCTTG TGGAATTTATTTTCAGGGAGGGTGACATAGACAACCGGTCATCCAGAGCTATGAGTGCTGATGCCATGATGGAGGGAACA CGCATTCACAGGAAAATCCAGGGCAGCATGGGGAAGGAGTATCAGGCGGAGGTGCCGCTTTCACTTGTTGTTGAAGGTGA TTTGTATGAGCTGACTGTCGAGGGCAGGGCAGATGGCATCTTTACGGAGGATGGCAAGTGTTTTGTCGATGAGATTAAGG GAATGTACAGAAAGGTTGAGCTGTTTGAAAAGCCGGTTTTTGTGCACCGTGCGCAGGCTATGTGCTATGCATATATTTTT GCTCTGCAAAATAATATGGAAACGATAGGCATTCAGATGACCTACTGCAATCTGGAAACGGAGCAGACTAAGTATTTTCG CGAGGAGTTCTCATTTGAAGAGATAAAAAAATGGTTTGATGACCTGATGGAAGAGTATGGCAAATGGGCAACGTTTCAGT GTGAAATGAAAAATCAAAGACAGGCTTCAATCAAAGAACTCGATTTTCCATATGAGTACAGACCGGGGCAGAAAAAGCTT GTTTCGGATGTCTACAGGACAATTATGCGTCAGAAGCTTCTTTTTATGCAGGCTCCGACCGGTGTGGGAAAGACTATCTC TACTATTTTCCCGGCAGTGAAGGCGGTTGGTGAGGAGCTGGCAGACAGAATCTTTTACCTGACAGCGAAGACCATCACCG CAACAGTTGCAAAGGAAACGTTTGCGCTGCTTGAAAAAAATGGTTACAGGGCAAAAACTATTCAGATAACGGCCAAGGAA AAGCTATGTCCGTGTGATGAGATGGAATGCAATCCGGTAACCTGTCCGTATGCAAAGGGGCATTTTGACAGAGTAAATGA TGCGGTTTTTGACCTGCTTCACAGATGTGAAATGATTGAGAGGGATGATATTTTATCACAGGCGGATAGGTATACCGTTT GTCCGTTTGAGCTTTGTCTTGATACGGCTAGCTGGTGTGATAATGTCATCTGCGATTACAACTATGTGTTTGACCCGAAT GTTTATCTTAAGAGATTTTTTCAGGAGGGGATAAAGGGAGATTATATTTTTCTCATTGATGAGGCTCACAATATGGTCGA AAGAAGCAGGCAGATGTATAGCGCTCAGATTTATAAGGAGGATTTCCTTACTGTGAAGCGCATTATGAAGGAGCACAGCC GCTCTATTGAGAAAGCGCTTGAAAAGTGCAATAAGATACTGCTTGGGATGAAGCGGGAGTGTGAGAATTACACGGTATAT GATACATTTGGCAATATGGTATTTTCCTTTATGAGGCTTATGACACTTCTGGATGAGTTTTTGCAGAAGGCTAATGAGTT TCCGGGGAAAAAGGATGTTATGGATTTTTATTTTGAGCTTCGCAATTTCCTGAACATTTATGATCTGGTGGATGAGCACT ACGTGATGTATTCCGAGCTTGAGGCTGATGGCAGGTTCATGCTAAAGCTTTTTTGCGTGGACCCGTCGCTTAATATACAA AAGAGGCTGGATAAGGGCAAGTCAGCTGTGTTTTTTTCGGCGACATTTTTGCCTGTAAACTATTACAAGAGCCTGCTAAG CACAAAAAAAGACAACTATGCCATATATGCTGACAGTACGTTTGACAGCAAAAAGAGGCTGCTTGCGATGGCAACCGATG TGAGCACGAGGTACACGAGGCGCTCAAGGAGTGAGTATGAGCGGATTGCAGGATATATTAATGCTGTTGTCACGCAAAAG ACTGGAAATTATATGGTTTTCTTTCCGTCATATAAGATGATGAATGATGTGGCAGATATTTACTGTGAAAAATATGCAGA CGAAACAGAGCTTATGCTGCAGAAAAATAATATGTCAGAGGCTGAGAGGGAGGAATTTCTGGACAGGTTTAGTGAGGAAT CGGACAGAACACTTGTGGCATTTGGTATCATGGGAGGCATATTCGGTGAGGGCATTGATTTGAAAAACGACAGACTGATA GGTGCTATTGTTGTCGGAACGGGGCTTCCGCAGATCAGCAATGAGAGAACTATATTAAAGGATTATTACGATGCCGAAAA CGGCTGTGGCTTTGACTATGCTTTCAGGTATCCGGGCATAAATAAAGTCCTCCAGGCGGCCGGAAGAGTAATCAGGACGA CGGAGGACACAGGTGTCATTTTGCTATTAGATGAGAGATTCTGGCAGAGAGAATATGATTTGCTCTATCCACGCGAGTGG AGTGACAGAAAGCCATGCAATATAGCAAATGTCGGAAAACTAGTTGCCGACTTCTGGGAGCAGATTTAA
Upstream 100 bases:
>100_bases TGACCAGGCATTTGATAATGTGGTTGATAAATTCACTGTAGCGTAATACAATTGAATAAGGTCCTTTGGGAGAGTTTCTT CTTGGAGCTCTCCCTTTTTT
Downstream 100 bases:
>100_bases AAATTCCTCAGTGGATGCTGACACGGGCATTGTAGTGTTTACAGACACAACAATCTGGCGTGGAGGCATCTTTTCTTTTG TCTTCAGCACGAAAAGCTCC
Product: putative ATP-dependent DNA-repair helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 822; Mature: 822
Protein sequence:
>822_residues MFSVLKMFGVRLKILPEHKTGNIIRNMQGEYMTEAGNNYSEKKTQLHISVRNLVEFIFREGDIDNRSSRAMSADAMMEGT RIHRKIQGSMGKEYQAEVPLSLVVEGDLYELTVEGRADGIFTEDGKCFVDEIKGMYRKVELFEKPVFVHRAQAMCYAYIF ALQNNMETIGIQMTYCNLETEQTKYFREEFSFEEIKKWFDDLMEEYGKWATFQCEMKNQRQASIKELDFPYEYRPGQKKL VSDVYRTIMRQKLLFMQAPTGVGKTISTIFPAVKAVGEELADRIFYLTAKTITATVAKETFALLEKNGYRAKTIQITAKE KLCPCDEMECNPVTCPYAKGHFDRVNDAVFDLLHRCEMIERDDILSQADRYTVCPFELCLDTASWCDNVICDYNYVFDPN VYLKRFFQEGIKGDYIFLIDEAHNMVERSRQMYSAQIYKEDFLTVKRIMKEHSRSIEKALEKCNKILLGMKRECENYTVY DTFGNMVFSFMRLMTLLDEFLQKANEFPGKKDVMDFYFELRNFLNIYDLVDEHYVMYSELEADGRFMLKLFCVDPSLNIQ KRLDKGKSAVFFSATFLPVNYYKSLLSTKKDNYAIYADSTFDSKKRLLAMATDVSTRYTRRSRSEYERIAGYINAVVTQK TGNYMVFFPSYKMMNDVADIYCEKYADETELMLQKNNMSEAEREEFLDRFSEESDRTLVAFGIMGGIFGEGIDLKNDRLI GAIVVGTGLPQISNERTILKDYYDAENGCGFDYAFRYPGINKVLQAAGRVIRTTEDTGVILLLDERFWQREYDLLYPREW SDRKPCNIANVGKLVADFWEQI
Sequences:
>Translated_822_residues MFSVLKMFGVRLKILPEHKTGNIIRNMQGEYMTEAGNNYSEKKTQLHISVRNLVEFIFREGDIDNRSSRAMSADAMMEGT RIHRKIQGSMGKEYQAEVPLSLVVEGDLYELTVEGRADGIFTEDGKCFVDEIKGMYRKVELFEKPVFVHRAQAMCYAYIF ALQNNMETIGIQMTYCNLETEQTKYFREEFSFEEIKKWFDDLMEEYGKWATFQCEMKNQRQASIKELDFPYEYRPGQKKL VSDVYRTIMRQKLLFMQAPTGVGKTISTIFPAVKAVGEELADRIFYLTAKTITATVAKETFALLEKNGYRAKTIQITAKE KLCPCDEMECNPVTCPYAKGHFDRVNDAVFDLLHRCEMIERDDILSQADRYTVCPFELCLDTASWCDNVICDYNYVFDPN VYLKRFFQEGIKGDYIFLIDEAHNMVERSRQMYSAQIYKEDFLTVKRIMKEHSRSIEKALEKCNKILLGMKRECENYTVY DTFGNMVFSFMRLMTLLDEFLQKANEFPGKKDVMDFYFELRNFLNIYDLVDEHYVMYSELEADGRFMLKLFCVDPSLNIQ KRLDKGKSAVFFSATFLPVNYYKSLLSTKKDNYAIYADSTFDSKKRLLAMATDVSTRYTRRSRSEYERIAGYINAVVTQK TGNYMVFFPSYKMMNDVADIYCEKYADETELMLQKNNMSEAEREEFLDRFSEESDRTLVAFGIMGGIFGEGIDLKNDRLI GAIVVGTGLPQISNERTILKDYYDAENGCGFDYAFRYPGINKVLQAAGRVIRTTEDTGVILLLDERFWQREYDLLYPREW SDRKPCNIANVGKLVADFWEQI >Mature_822_residues MFSVLKMFGVRLKILPEHKTGNIIRNMQGEYMTEAGNNYSEKKTQLHISVRNLVEFIFREGDIDNRSSRAMSADAMMEGT RIHRKIQGSMGKEYQAEVPLSLVVEGDLYELTVEGRADGIFTEDGKCFVDEIKGMYRKVELFEKPVFVHRAQAMCYAYIF ALQNNMETIGIQMTYCNLETEQTKYFREEFSFEEIKKWFDDLMEEYGKWATFQCEMKNQRQASIKELDFPYEYRPGQKKL VSDVYRTIMRQKLLFMQAPTGVGKTISTIFPAVKAVGEELADRIFYLTAKTITATVAKETFALLEKNGYRAKTIQITAKE KLCPCDEMECNPVTCPYAKGHFDRVNDAVFDLLHRCEMIERDDILSQADRYTVCPFELCLDTASWCDNVICDYNYVFDPN VYLKRFFQEGIKGDYIFLIDEAHNMVERSRQMYSAQIYKEDFLTVKRIMKEHSRSIEKALEKCNKILLGMKRECENYTVY DTFGNMVFSFMRLMTLLDEFLQKANEFPGKKDVMDFYFELRNFLNIYDLVDEHYVMYSELEADGRFMLKLFCVDPSLNIQ KRLDKGKSAVFFSATFLPVNYYKSLLSTKKDNYAIYADSTFDSKKRLLAMATDVSTRYTRRSRSEYERIAGYINAVVTQK TGNYMVFFPSYKMMNDVADIYCEKYADETELMLQKNNMSEAEREEFLDRFSEESDRTLVAFGIMGGIFGEGIDLKNDRLI GAIVVGTGLPQISNERTILKDYYDAENGCGFDYAFRYPGINKVLQAAGRVIRTTEDTGVILLLDERFWQREYDLLYPREW SDRKPCNIANVGKLVADFWEQI
Specific function: Unknown
COG id: COG1199
COG function: function code KL; Rad3-related DNA helicases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010614 - InterPro: IPR014013 - InterPro: IPR006555 - InterPro: IPR001650 [H]
Pfam domain/function: PF06733 DEAD_2 [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 95860; Mature: 95860
Theoretical pI: Translated: 5.17; Mature: 5.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 6.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFSVLKMFGVRLKILPEHKTGNIIRNMQGEYMTEAGNNYSEKKTQLHISVRNLVEFIFRE CHHHHHHHCCEEEEECCCCCCCHHHHCCCCHHHHCCCCCCCHHHEEEEEHHHHHHHHHHC GDIDNRSSRAMSADAMMEGTRIHRKIQGSMGKEYQAEVPLSLVVEGDLYELTVEGRADGI CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCE FTEDGKCFVDEIKGMYRKVELFEKPVFVHRAQAMCYAYIFALQNNMETIGIQMTYCNLET EECCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCH EQTKYFREEFSFEEIKKWFDDLMEEYGKWATFQCEMKNQRQASIKELDFPYEYRPGQKKL HHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCCCCCCCHHHH VSDVYRTIMRQKLLFMQAPTGVGKTISTIFPAVKAVGEELADRIFYLTAKTITATVAKET HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHH FALLEKNGYRAKTIQITAKEKLCPCDEMECNPVTCPYAKGHFDRVNDAVFDLLHRCEMIE HHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH RDDILSQADRYTVCPFELCLDTASWCDNVICDYNYVFDPNVYLKRFFQEGIKGDYIFLID HHHHHHHCCCCCCCHHHHHHHHHHHHCCCEECCCEEECCHHHHHHHHHHCCCCCEEEEEC EAHNMVERSRQMYSAQIYKEDFLTVKRIMKEHSRSIEKALEKCNKILLGMKRECENYTVY CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE DTFGNMVFSFMRLMTLLDEFLQKANEFPGKKDVMDFYFELRNFLNIYDLVDEHYVMYSEL HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EADGRFMLKLFCVDPSLNIQKRLDKGKSAVFFSATFLPVNYYKSLLSTKKDNYAIYADST CCCCEEEEEEEEECCCCCHHHHHCCCCCEEEEEEEEEEHHHHHHHHCCCCCCEEEEECCC FDSKKRLLAMATDVSTRYTRRSRSEYERIAGYINAVVTQKTGNYMVFFPSYKMMNDVADI CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEECCHHHHHHHHHH YCEKYADETELMLQKNNMSEAEREEFLDRFSEESDRTLVAFGIMGGIFGEGIDLKNDRLI HHHHHCCCHHHHEECCCCCHHHHHHHHHHHCCCCCCEEEEEEHHHHHHCCCCCCCCCCEE GAIVVGTGLPQISNERTILKDYYDAENGCGFDYAFRYPGINKVLQAAGRVIRTTEDTGVI EEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCEEEECCCHHHHHHHCCCEEEEECCCCEE LLLDERFWQREYDLLYPREWSDRKPCNIANVGKLVADFWEQI EEECCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC >Mature Secondary Structure MFSVLKMFGVRLKILPEHKTGNIIRNMQGEYMTEAGNNYSEKKTQLHISVRNLVEFIFRE CHHHHHHHCCEEEEECCCCCCCHHHHCCCCHHHHCCCCCCCHHHEEEEEHHHHHHHHHHC GDIDNRSSRAMSADAMMEGTRIHRKIQGSMGKEYQAEVPLSLVVEGDLYELTVEGRADGI CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCE FTEDGKCFVDEIKGMYRKVELFEKPVFVHRAQAMCYAYIFALQNNMETIGIQMTYCNLET EECCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCH EQTKYFREEFSFEEIKKWFDDLMEEYGKWATFQCEMKNQRQASIKELDFPYEYRPGQKKL HHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCCCCCCCHHHH VSDVYRTIMRQKLLFMQAPTGVGKTISTIFPAVKAVGEELADRIFYLTAKTITATVAKET HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHH FALLEKNGYRAKTIQITAKEKLCPCDEMECNPVTCPYAKGHFDRVNDAVFDLLHRCEMIE HHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH RDDILSQADRYTVCPFELCLDTASWCDNVICDYNYVFDPNVYLKRFFQEGIKGDYIFLID HHHHHHHCCCCCCCHHHHHHHHHHHHCCCEECCCEEECCHHHHHHHHHHCCCCCEEEEEC EAHNMVERSRQMYSAQIYKEDFLTVKRIMKEHSRSIEKALEKCNKILLGMKRECENYTVY CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE DTFGNMVFSFMRLMTLLDEFLQKANEFPGKKDVMDFYFELRNFLNIYDLVDEHYVMYSEL HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EADGRFMLKLFCVDPSLNIQKRLDKGKSAVFFSATFLPVNYYKSLLSTKKDNYAIYADST CCCCEEEEEEEEECCCCCHHHHHCCCCCEEEEEEEEEEHHHHHHHHCCCCCCEEEEECCC FDSKKRLLAMATDVSTRYTRRSRSEYERIAGYINAVVTQKTGNYMVFFPSYKMMNDVADI CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEECCHHHHHHHHHH YCEKYADETELMLQKNNMSEAEREEFLDRFSEESDRTLVAFGIMGGIFGEGIDLKNDRLI HHHHHCCCHHHHEECCCCCHHHHHHHHHHHCCCCCCEEEEEEHHHHHHCCCCCCCCCCEE GAIVVGTGLPQISNERTILKDYYDAENGCGFDYAFRYPGINKVLQAAGRVIRTTEDTGVI EEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCEEEECCCHHHHHHHCCCEEEEECCCCEE LLLDERFWQREYDLLYPREWSDRKPCNIANVGKLVADFWEQI EEECCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11029001 [H]