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The map label for this gene is rimM [H]

Identifier: 238923880

GI number: 238923880

Start: 1388413

End: 1388949

Strand: Direct

Name: rimM [H]

Synonym: EUBREC_1508

Alternate gene names: 238923880

Gene position: 1388413-1388949 (Clockwise)

Preceding gene: 238923879

Following gene: 238923881

Centisome position: 40.25

GC content: 41.53

Gene sequence:

>537_bases
ATGATTTATATTAATATCAGGAGACAGAGAATGGAAGATTTACTACAGGTAGGTGTAATTACGAGCACACACGGCATTCG
CGGTGAGGTAAAGGTGTTCCCAACCACTGACGATGCTGCCCGTTTTAAAAAGCTTAAAAATGTCATTCTGGATAATGGCA
AAGAGCGCAGGGATTTGGAAATAACTTCTGTCAAATTTTTCAAGAACCAGGTTATCTTGAAATTTAAGGGCATAGATGAC
ATAAATGATGTAGAAAAATATAAAAAGGCACCTCTTTTTGTGACAAGGGAAAATGCGGTGCCACTTGAGGAAAATGAGTA
CTTTATAGCTGATCTTATCGGGCTTTCCGTCACATCAGACGAAGGAGAGGAGCTTGGAGTTATAGATGATGTGCTCCAGA
CCGGTGCCAACGATGTGTATGTTGTTAAGAAAGCCGGTGCAAATGATCTGCTGATTCCGGCAATAAAGGATTGTATACTG
GACGTTGATGTGGAAAATGGCACGATGAAGGTGCATCTGCTGGCAGGTTTGAGATAG

Upstream 100 bases:

>100_bases
TAAAGGCATCTCTTATGAGATGCCTGTTTTTTTATAATTTATAGTAACTATTCAGAACCGGTATTGTATGGTTTTGAGAA
TGTGCGTGGGCTGAATAGTT

Downstream 100 bases:

>100_bases
CTACATCTCAAACTGCAAAAACCGTAAAATGAGATATAAAATTGAACAAAATCATACATTTTAAATCGTAAAACTGTAAA
ACAGGATGATATAGGAGATA

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MIYINIRRQRMEDLLQVGVITSTHGIRGEVKVFPTTDDAARFKKLKNVILDNGKERRDLEITSVKFFKNQVILKFKGIDD
INDVEKYKKAPLFVTRENAVPLEENEYFIADLIGLSVTSDEGEELGVIDDVLQTGANDVYVVKKAGANDLLIPAIKDCIL
DVDVENGTMKVHLLAGLR

Sequences:

>Translated_178_residues
MIYINIRRQRMEDLLQVGVITSTHGIRGEVKVFPTTDDAARFKKLKNVILDNGKERRDLEITSVKFFKNQVILKFKGIDD
INDVEKYKKAPLFVTRENAVPLEENEYFIADLIGLSVTSDEGEELGVIDDVLQTGANDVYVVKKAGANDLLIPAIKDCIL
DVDVENGTMKVHLLAGLR
>Mature_178_residues
MIYINIRRQRMEDLLQVGVITSTHGIRGEVKVFPTTDDAARFKKLKNVILDNGKERRDLEITSVKFFKNQVILKFKGIDD
INDVEKYKKAPLFVTRENAVPLEENEYFIADLIGLSVTSDEGEELGVIDDVLQTGANDVYVVKKAGANDLLIPAIKDCIL
DVDVENGTMKVHLLAGLR

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=131, Percent_Identity=31.2977099236641, Blast_Score=81, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 19990; Mature: 19990

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYINIRRQRMEDLLQVGVITSTHGIRGEVKVFPTTDDAARFKKLKNVILDNGKERRDLE
CEEEEEHHHHHHHHHHHCCEECCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCEE
ITSVKFFKNQVILKFKGIDDINDVEKYKKAPLFVTRENAVPLEENEYFIADLIGLSVTSD
EEEEEEECCEEEEEEECCCCHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEEEEEEEECC
EGEELGVIDDVLQTGANDVYVVKKAGANDLLIPAIKDCILDVDVENGTMKVHLLAGLR
CCCCCCHHHHHHHCCCCCEEEEEECCCCCEEHHHHHHEEEEEEECCCEEEEEEEECCC
>Mature Secondary Structure
MIYINIRRQRMEDLLQVGVITSTHGIRGEVKVFPTTDDAARFKKLKNVILDNGKERRDLE
CEEEEEHHHHHHHHHHHCCEECCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCEE
ITSVKFFKNQVILKFKGIDDINDVEKYKKAPLFVTRENAVPLEENEYFIADLIGLSVTSD
EEEEEEECCEEEEEEECCCCHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEEEEEEEECC
EGEELGVIDDVLQTGANDVYVVKKAGANDLLIPAIKDCILDVDVENGTMKVHLLAGLR
CCCCCCHHHHHHHCCCCCEEEEEECCCCCEEHHHHHHEEEEEEECCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA