Click here to switch to the map view.

The map label for this gene is 238923863

Identifier: 238923863

GI number: 238923863

Start: 1372185

End: 1372805

Strand: Direct

Name: 238923863

Synonym: EUBREC_1491

Alternate gene names: NA

Gene position: 1372185-1372805 (Clockwise)

Preceding gene: 238923862

Following gene: 238923864

Centisome position: 39.78

GC content: 44.28

Gene sequence:

>621_bases
ATGGCATCAAAATACTATGCGGTAAAAAAGGGAAAGGTTCCCGGGATATATTTCAACTGGAATGATTGCAAAGCAATGGT
TGACGGATATCAGGGAGCAGTGTATAAAAGCTTTAAGACGATAGAAGAGGCAGAAAAATTTATTAACGGAGAGAAAATTA
TTGCCGGAGAGAAAACCATTACGGGAATGAAATCATCCGGCGAAAATAGTACGTATGCGTTTGTAGACGGCTCCTTTAAC
AAGGTTACACAAACCTATGGCTATGGAGGCTTTCTTGTGACTGACCATGAAAAATACGTGCTGCAGGGGGCAGATAATGA
TGCCGAGATGGTCACAATGCGCAACGTAGCAGGAGAGATAAAGGGCGCGGAGGCTGCCGTAAAAAAGGCTATAGAGCTTG
GAATTAAGGAACTGGTCATATACTATGACTACATGGGCATAGAGATGTGGGCAACAGGGGCCTGGAAGCGAAACAAGGCA
GGCACTATAGCTTATCACGAATACATCATGTCAGTTAAGGATAAAATAAAGCTTACCTTTGTGAAGGTAAAAGGACACTC
AGGAGTAGAGGGCAACGAAGAGGCAGATAAGCTCGCCAAGCAGGCTGTGGGGATACTGTAG

Upstream 100 bases:

>100_bases
TACCATAGCTGAGGAGGGCACACCTGAGGAAGTATTTGGCGCACCAAAGAGTGAGAGATTACAGGAATTTTTGTCAAGAG
TGTTATAGGAGAAATAAAGC

Downstream 100 bases:

>100_bases
CAGTTTCCCACATAAAAGAAACAAAAATATAGCATAACAGGAGAAAAAATGAGCATATTCAATGTAGAACTCAAAAAAGT
AGTAGATGACACATATGATA

Product: RNAse H family protein

Products: NA

Alternate protein names: Ribonuclease HI; Ribonuclease H-Related Protein; RNAse H Family Protein; Ribonuclease; Ribonuclease H1-Like; RNAse H

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MASKYYAVKKGKVPGIYFNWNDCKAMVDGYQGAVYKSFKTIEEAEKFINGEKIIAGEKTITGMKSSGENSTYAFVDGSFN
KVTQTYGYGGFLVTDHEKYVLQGADNDAEMVTMRNVAGEIKGAEAAVKKAIELGIKELVIYYDYMGIEMWATGAWKRNKA
GTIAYHEYIMSVKDKIKLTFVKVKGHSGVEGNEEADKLAKQAVGIL

Sequences:

>Translated_206_residues
MASKYYAVKKGKVPGIYFNWNDCKAMVDGYQGAVYKSFKTIEEAEKFINGEKIIAGEKTITGMKSSGENSTYAFVDGSFN
KVTQTYGYGGFLVTDHEKYVLQGADNDAEMVTMRNVAGEIKGAEAAVKKAIELGIKELVIYYDYMGIEMWATGAWKRNKA
GTIAYHEYIMSVKDKIKLTFVKVKGHSGVEGNEEADKLAKQAVGIL
>Mature_205_residues
ASKYYAVKKGKVPGIYFNWNDCKAMVDGYQGAVYKSFKTIEEAEKFINGEKIIAGEKTITGMKSSGENSTYAFVDGSFNK
VTQTYGYGGFLVTDHEKYVLQGADNDAEMVTMRNVAGEIKGAEAAVKKAIELGIKELVIYYDYMGIEMWATGAWKRNKAG
TIAYHEYIMSVKDKIKLTFVKVKGHSGVEGNEEADKLAKQAVGIL

Specific function: Unknown

COG id: COG3341

COG function: function code R; Predicted double-stranded RNA/RNA-DNA hybrid binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Caenorhabditis elegans, GI115532542, Length=249, Percent_Identity=28.1124497991968, Blast_Score=96, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22756; Mature: 22625

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: PS50879 RNASE_H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASKYYAVKKGKVPGIYFNWNDCKAMVDGYQGAVYKSFKTIEEAEKFINGEKIIAGEKTI
CCCCEEEEECCCCCEEEEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCEE
TGMKSSGENSTYAFVDGSFNKVTQTYGYGGFLVTDHEKYVLQGADNDAEMVTMRNVAGEI
ECCCCCCCCCEEEEECCCHHHHHHHCCCCCEEEECCCEEEEECCCCCHHEEEEHHHHCCC
KGAEAAVKKAIELGIKELVIYYDYMGIEMWATGAWKRNKAGTIAYHEYIMSVKDKIKLTF
CCHHHHHHHHHHHHHHHHEEEHEECCEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEE
VKVKGHSGVEGNEEADKLAKQAVGIL
EEEECCCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
ASKYYAVKKGKVPGIYFNWNDCKAMVDGYQGAVYKSFKTIEEAEKFINGEKIIAGEKTI
CCCEEEEECCCCCEEEEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCEE
TGMKSSGENSTYAFVDGSFNKVTQTYGYGGFLVTDHEKYVLQGADNDAEMVTMRNVAGEI
ECCCCCCCCCEEEEECCCHHHHHHHCCCCCEEEECCCEEEEECCCCCHHEEEEHHHHCCC
KGAEAAVKKAIELGIKELVIYYDYMGIEMWATGAWKRNKAGTIAYHEYIMSVKDKIKLTF
CCHHHHHHHHHHHHHHHHEEEHEECCEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEE
VKVKGHSGVEGNEEADKLAKQAVGIL
EEEECCCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA