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The map label for this gene is rnhA [H]

Identifier: 238923647

GI number: 238923647

Start: 1159471

End: 1159926

Strand: Direct

Name: rnhA [H]

Synonym: EUBREC_1269

Alternate gene names: 238923647

Gene position: 1159471-1159926 (Clockwise)

Preceding gene: 238923646

Following gene: 238923648

Centisome position: 33.61

GC content: 42.32

Gene sequence:

>456_bases
ATGAAAAAAGTTAACGTATACATCTATTCAGGTATCAGAACAATTAAAAAAACAGACGGAGCAGCAGGCTATGTTCTGTC
ATACATGACCAAAAAAGACATCGAAGCAACATTGAGCAACATAGTCTATCTTGAGGATGTGACGCGTCACGAGGCAGAGC
TTGAAGTCCTCAACCAGGCACTTTCAAGGCTCAACACAAAAGACATTGAGATAGACATATACACCGACTCAAGTTACCTT
ACATCAGCGCTGGATCTTGACTGGATACACAAGTGGCAGCAGTCAGGCTGGAAAAATTCCAAGGGCGAGCCGGTAAAGCA
TGCCGACAAATGGCAGAAAACGTTGATTTTACTCAATGGGACACGATTTTATATATACACGAATCAACACCATGAATACA
GCAACTGGCTTAAAGACCAGTGCGAGAAGAAAGGACCGGAAGAAAATGGAAAATGA

Upstream 100 bases:

>100_bases
ACAGGCTATTCATACCTCTACTACATGCAGCGGACTATCTCAGACGGCAAATCCCCCGGAAACCGCATAAAGCCCCAATG
GGAGGCAGATTATACACATT

Downstream 100 bases:

>100_bases
AGAACTGATTATGTTACCGGTGTCGGCAATATACCCACACCCGGACAATCCGCGAAAGGACGTGGGAGATGTAACTGAAC
TGGCTGCCTCCATCAAAAAG

Product: ribonuclease H

Products: NA

Alternate protein names: RNase H [H]

Number of amino acids: Translated: 151; Mature: 151

Protein sequence:

>151_residues
MKKVNVYIYSGIRTIKKTDGAAGYVLSYMTKKDIEATLSNIVYLEDVTRHEAELEVLNQALSRLNTKDIEIDIYTDSSYL
TSALDLDWIHKWQQSGWKNSKGEPVKHADKWQKTLILLNGTRFYIYTNQHHEYSNWLKDQCEKKGPEENGK

Sequences:

>Translated_151_residues
MKKVNVYIYSGIRTIKKTDGAAGYVLSYMTKKDIEATLSNIVYLEDVTRHEAELEVLNQALSRLNTKDIEIDIYTDSSYL
TSALDLDWIHKWQQSGWKNSKGEPVKHADKWQKTLILLNGTRFYIYTNQHHEYSNWLKDQCEKKGPEENGK
>Mature_151_residues
MKKVNVYIYSGIRTIKKTDGAAGYVLSYMTKKDIEATLSNIVYLEDVTRHEAELEVLNQALSRLNTKDIEIDIYTDSSYL
TSALDLDWIHKWQQSGWKNSKGEPVKHADKWQKTLILLNGTRFYIYTNQHHEYSNWLKDQCEKKGPEENGK

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG0328

COG function: function code L; Ribonuclease HI

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RNase H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022892
- InterPro:   IPR012337
- InterPro:   IPR002156 [H]

Pfam domain/function: PF00075 RnaseH [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 17604; Mature: 17604

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: PS50879 RNASE_H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVNVYIYSGIRTIKKTDGAAGYVLSYMTKKDIEATLSNIVYLEDVTRHEAELEVLNQA
CCEEEEEEECCEEHHHHCCCCHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHH
LSRLNTKDIEIDIYTDSSYLTSALDLDWIHKWQQSGWKNSKGEPVKHADKWQKTLILLNG
HHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHEEEEEEC
TRFYIYTNQHHEYSNWLKDQCEKKGPEENGK
CEEEEEECCCCCHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKKVNVYIYSGIRTIKKTDGAAGYVLSYMTKKDIEATLSNIVYLEDVTRHEAELEVLNQA
CCEEEEEEECCEEHHHHCCCCHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHH
LSRLNTKDIEIDIYTDSSYLTSALDLDWIHKWQQSGWKNSKGEPVKHADKWQKTLILLNG
HHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHEEEEEEC
TRFYIYTNQHHEYSNWLKDQCEKKGPEENGK
CEEEEEECCCCCHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA