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The map label for this gene is yvbU [H]

Identifier: 238923465

GI number: 238923465

Start: 992985

End: 993884

Strand: Direct

Name: yvbU [H]

Synonym: EUBREC_1085

Alternate gene names: 238923465

Gene position: 992985-993884 (Clockwise)

Preceding gene: 238923464

Following gene: 238923466

Centisome position: 28.78

GC content: 43.89

Gene sequence:

>900_bases
ATGACTCTGCAACAATTAAAATACGTGGTGACAGTGGCAGAATGCGGCAATATAACAGAGGCTGCAAAGCAGCTTTTTGT
CTCACAGCCCACTGTGACCAGCGCTATACATGACCTGGAAAAAGAGATGCAGATAGTTATTTTCATCAGGACAAACAAGG
GAGTGATACTATCAGAAGATGGTGAGAGATTTCTCGGTCATGCCAGACAGGTGCTCGAGCAGGTGGATCTCATAGAGGGA
ATCTACAAGGATGATGTGGTGAGTAAGCCGCACTTTGCAGTATCGTGTCAGCACTATTCCTTTGCGGTGAATGCATTTGT
GGATGTAATCAGAGAGTTTGATGCATGTCAGTATGATTTTACCATCAGGGAGGAGCAGACTCACGAAATTATTGAGGATG
TCACGAATTTAAAGAGTGAGCTGGGAGTCATATATCTAAGCTCCAAGAATACGGAGGTGCTTTCAAAGATGCTAAAGCGT
AATGAACTCGAGTTCACAGAGCTTTTTACAGCCACACCGCATGTATTCATATGTGACAGTCACCCGCTTGCTTCAAAAAA
GAGCATCACGATGGATGATCTGCAGGACTATCCGTACCTGACGTATGAGCAGGGAGAGTACAATTCACAGTACTTTTCGG
AGGAGTTTGTCAGCACTCTTGACAGCAGAAAGAATATCAGAGTAAGAGACAGAGCTACACTTTTTAATCTGATAATTGGC
TTAAATGGCTACACAGTGTGCTCAGGAGTGATTTCCGCTGAGCTGAATGGAAGGAATATTATATCAAAGCCACTTGATGT
GGAGGAGTATATGAGGATAGGCATTATCAGCAGAAAGGGTGTGGTACTCTCGCGATATGCAAGGGAGTATATCGAAGCAT
TGAAGGCTCACTGTATGTGA

Upstream 100 bases:

>100_bases
CATTCCGCTTATGCTCGGAAAGCTGCTTGGTGAGATACTGAGAAAGATTATCGGCATACAGTAAAATAATATTTTGATAT
GTAACAAAAGGAGAACGAAT

Downstream 100 bases:

>100_bases
CGTTACAATAATATAATATGATTAAAGGGTCGTATCATCGATGCATACTTGCATGCAATTCGATGTATACCTTAGTGCCC
ACACTATATATAAGGTCTAA

Product: hydrogen peroxide-inducible genes activator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MTLQQLKYVVTVAECGNITEAAKQLFVSQPTVTSAIHDLEKEMQIVIFIRTNKGVILSEDGERFLGHARQVLEQVDLIEG
IYKDDVVSKPHFAVSCQHYSFAVNAFVDVIREFDACQYDFTIREEQTHEIIEDVTNLKSELGVIYLSSKNTEVLSKMLKR
NELEFTELFTATPHVFICDSHPLASKKSITMDDLQDYPYLTYEQGEYNSQYFSEEFVSTLDSRKNIRVRDRATLFNLIIG
LNGYTVCSGVISAELNGRNIISKPLDVEEYMRIGIISRKGVVLSRYAREYIEALKAHCM

Sequences:

>Translated_299_residues
MTLQQLKYVVTVAECGNITEAAKQLFVSQPTVTSAIHDLEKEMQIVIFIRTNKGVILSEDGERFLGHARQVLEQVDLIEG
IYKDDVVSKPHFAVSCQHYSFAVNAFVDVIREFDACQYDFTIREEQTHEIIEDVTNLKSELGVIYLSSKNTEVLSKMLKR
NELEFTELFTATPHVFICDSHPLASKKSITMDDLQDYPYLTYEQGEYNSQYFSEEFVSTLDSRKNIRVRDRATLFNLIIG
LNGYTVCSGVISAELNGRNIISKPLDVEEYMRIGIISRKGVVLSRYAREYIEALKAHCM
>Mature_298_residues
TLQQLKYVVTVAECGNITEAAKQLFVSQPTVTSAIHDLEKEMQIVIFIRTNKGVILSEDGERFLGHARQVLEQVDLIEGI
YKDDVVSKPHFAVSCQHYSFAVNAFVDVIREFDACQYDFTIREEQTHEIIEDVTNLKSELGVIYLSSKNTEVLSKMLKRN
ELEFTELFTATPHVFICDSHPLASKKSITMDDLQDYPYLTYEQGEYNSQYFSEEFVSTLDSRKNIRVRDRATLFNLIIGL
NGYTVCSGVISAELNGRNIISKPLDVEEYMRIGIISRKGVVLSRYAREYIEALKAHCM

Specific function: Hydrogen Peroxide Sensor. Activates The Expression Of A Regulon Of Hydrogen Peroxide-Inducible Genes Such As Katg, Gor, Ahpc, Ahpf, Oxys (A Regulatory RNA), Dps, Fur And Grxa. Oxyr Expression Is Negatively Autoregulated By Binding To A 43 Bp Region Upstre

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790399, Length=302, Percent_Identity=22.5165562913907, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI145693105, Length=302, Percent_Identity=26.4900662251656, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787879, Length=205, Percent_Identity=26.8292682926829, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788481, Length=205, Percent_Identity=25.3658536585366, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788887, Length=277, Percent_Identity=25.9927797833935, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34168; Mature: 34037

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLQQLKYVVTVAECGNITEAAKQLFVSQPTVTSAIHDLEKEMQIVIFIRTNKGVILSED
CCHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHCCEEEEEEECCCCEEECCC
GERFLGHARQVLEQVDLIEGIYKDDVVSKPHFAVSCQHYSFAVNAFVDVIREFDACQYDF
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCE
TIREEQTHEIIEDVTNLKSELGVIYLSSKNTEVLSKMLKRNELEFTELFTATPHVFICDS
EECCHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHCCCHHHHHHHCCCEEEEECC
HPLASKKSITMDDLQDYPYLTYEQGEYNSQYFSEEFVSTLDSRKNIRVRDRATLFNLIIG
CCCCCCCCCCHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHC
LNGYTVCSGVISAELNGRNIISKPLDVEEYMRIGIISRKGVVLSRYAREYIEALKAHCM
CCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TLQQLKYVVTVAECGNITEAAKQLFVSQPTVTSAIHDLEKEMQIVIFIRTNKGVILSED
CHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHCCEEEEEEECCCCEEECCC
GERFLGHARQVLEQVDLIEGIYKDDVVSKPHFAVSCQHYSFAVNAFVDVIREFDACQYDF
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCE
TIREEQTHEIIEDVTNLKSELGVIYLSSKNTEVLSKMLKRNELEFTELFTATPHVFICDS
EECCHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHCCCHHHHHHHCCCEEEEECC
HPLASKKSITMDDLQDYPYLTYEQGEYNSQYFSEEFVSTLDSRKNIRVRDRATLFNLIIG
CCCCCCCCCCHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHC
LNGYTVCSGVISAELNGRNIISKPLDVEEYMRIGIISRKGVVLSRYAREYIEALKAHCM
CCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]