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The map label for this gene is ydcM [C]

Identifier: 238923463

GI number: 238923463

Start: 990686

End: 991846

Strand: Direct

Name: ydcM [C]

Synonym: EUBREC_1083

Alternate gene names: 238923463

Gene position: 990686-991846 (Clockwise)

Preceding gene: 238923462

Following gene: 238923464

Centisome position: 28.72

GC content: 32.9

Gene sequence:

>1161_bases
ATGAGGAAATTGCTAAAGAGCTTCAAGACGGAAATAAGTCCGACGATTGAGCAAAAAATCAAGATTAACAAGACTATTGG
CACTTGTAGGTATGTCTATAACTTCTATCTCGATCATAACAAAACTTTATATGATAACGGTGAAAAGTTTATGACTGGCA
AGAGTTTCAGCGTATGGCTTAATAATGAGTATATTCCTAATAATCCTGATAAAATATGGATTAAAGAAGCATATTCAAAA
GCTGTAAAAAAGTCTATTGAGGATGGATGTACTGCATTTACAAGATTTTTTAAACATCAAAGCGCTTTTCCTAATTTCAA
AAAGAAAGGTAAATCTGATGTAAAAATGTATTTCGTAAAGAACAATACTAAAGACTGTAGATGTGAGAGACATAGGTTGA
ACATACCCACTTTAGGTTGGGTACGCATTAAAGAAAAAGGTTATATACCAACAACTAAAGACGGATGGAAAATCAAAAGC
GGTACAGTATCCGTCAAAGCAGACAGATACTATGTGTCAGTTCTTGTAGAAATTCCCGACGTTAAGATTGCTAATAATAG
CAATGGTGGTATAGGAATTGACTTGGGTTTAAAAGACTTGGCGATTGTTTCCAATGGTAAAACTTATAAAAATATCAATA
AGTCAACAAGAATTAAAAAATTGGAAAAGAAACTGCGTAGAGAACAAAGATGTCTCTCACGAAAATATGAGAATTTAAAG
AAAGGAGAGTCCACTCAAAAGAATATACAAAAGCAAAAGCTCAAAGTACAAAGACTTCATCATAAAATAGATAATATCCG
TACTGATTATATCAATAAATCAATAGCTGAGATAGTGAAAACCAAGCCATCTTATATAACTATTGAAAATTTGAATGTAT
CAGGAATGATGAAGAACAGACATCTTTCAAAAGCTGTTGCGTCACAGAAGTTCTATGAATTTAGAACCAAGCTTAAAGCA
AAATGTGATGAAAATGGTATTGAATTAAGAGTCGTAGACAGATGGTATCCGTCATCTAAAATATGTCACTGCTGTGGTGC
TATCAAGAAAGATTTGAAACTTTCAGACAGAATATACCATTGTGATTGTGGCTATGTCGAGGATAGGGATTTTAACGCTG
CTCTTAATCTAAAAGATGCTTTAACTTACGAGGTTGCATAA

Upstream 100 bases:

>100_bases
TCACCACAGGAAGAACTCGTACAGGATATTGTTTCTATACTTCATGTGTTCTCTTGCAGGTTGTATGGACTTCGTAAGTA
TAAAAAACAAATAGAAAGGG

Downstream 100 bases:

>100_bases
TCAACGCAAACGTAAGTATGTACTGCGGGCTATCGCAGGAATTTACGACTGTGGAGTGTACAAGAACTTGTGAGTAGCGT
ATTGTTTACAATCGCCAAAG

Product: putative transposase

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 386; Mature: 386

Protein sequence:

>386_residues
MRKLLKSFKTEISPTIEQKIKINKTIGTCRYVYNFYLDHNKTLYDNGEKFMTGKSFSVWLNNEYIPNNPDKIWIKEAYSK
AVKKSIEDGCTAFTRFFKHQSAFPNFKKKGKSDVKMYFVKNNTKDCRCERHRLNIPTLGWVRIKEKGYIPTTKDGWKIKS
GTVSVKADRYYVSVLVEIPDVKIANNSNGGIGIDLGLKDLAIVSNGKTYKNINKSTRIKKLEKKLRREQRCLSRKYENLK
KGESTQKNIQKQKLKVQRLHHKIDNIRTDYINKSIAEIVKTKPSYITIENLNVSGMMKNRHLSKAVASQKFYEFRTKLKA
KCDENGIELRVVDRWYPSSKICHCCGAIKKDLKLSDRIYHCDCGYVEDRDFNAALNLKDALTYEVA

Sequences:

>Translated_386_residues
MRKLLKSFKTEISPTIEQKIKINKTIGTCRYVYNFYLDHNKTLYDNGEKFMTGKSFSVWLNNEYIPNNPDKIWIKEAYSK
AVKKSIEDGCTAFTRFFKHQSAFPNFKKKGKSDVKMYFVKNNTKDCRCERHRLNIPTLGWVRIKEKGYIPTTKDGWKIKS
GTVSVKADRYYVSVLVEIPDVKIANNSNGGIGIDLGLKDLAIVSNGKTYKNINKSTRIKKLEKKLRREQRCLSRKYENLK
KGESTQKNIQKQKLKVQRLHHKIDNIRTDYINKSIAEIVKTKPSYITIENLNVSGMMKNRHLSKAVASQKFYEFRTKLKA
KCDENGIELRVVDRWYPSSKICHCCGAIKKDLKLSDRIYHCDCGYVEDRDFNAALNLKDALTYEVA
>Mature_386_residues
MRKLLKSFKTEISPTIEQKIKINKTIGTCRYVYNFYLDHNKTLYDNGEKFMTGKSFSVWLNNEYIPNNPDKIWIKEAYSK
AVKKSIEDGCTAFTRFFKHQSAFPNFKKKGKSDVKMYFVKNNTKDCRCERHRLNIPTLGWVRIKEKGYIPTTKDGWKIKS
GTVSVKADRYYVSVLVEIPDVKIANNSNGGIGIDLGLKDLAIVSNGKTYKNINKSTRIKKLEKKLRREQRCLSRKYENLK
KGESTQKNIQKQKLKVQRLHHKIDNIRTDYINKSIAEIVKTKPSYITIENLNVSGMMKNRHLSKAVASQKFYEFRTKLKA
KCDENGIELRVVDRWYPSSKICHCCGAIKKDLKLSDRIYHCDCGYVEDRDFNAALNLKDALTYEVA

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=377, Percent_Identity=30.7692307692308, Blast_Score=159, Evalue=3e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 44866; Mature: 44866

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKLLKSFKTEISPTIEQKIKINKTIGTCRYVYNFYLDHNKTLYDNGEKFMTGKSFSVWL
CHHHHHHHHHHCCCCHHHHEEEECHHHHHEEEEEEEECCCCEEECCCCEEECCCEEEEEE
NNEYIPNNPDKIWIKEAYSKAVKKSIEDGCTAFTRFFKHQSAFPNFKKKGKSDVKMYFVK
CCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCEEEEEEE
NNTKDCRCERHRLNIPTLGWVRIKEKGYIPTTKDGWKIKSGTVSVKADRYYVSVLVEIPD
CCCCCCCHHHHCCCCCCCEEEEEECCCCCCCCCCCCEEECCEEEEEECEEEEEEEEECCC
VKIANNSNGGIGIDLGLKDLAIVSNGKTYKNINKSTRIKKLEKKLRREQRCLSRKYENLK
EEEECCCCCCEEEEECCCEEEEEECCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KGESTQKNIQKQKLKVQRLHHKIDNIRTDYINKSIAEIVKTKPSYITIENLNVSGMMKNR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEHHHH
HLSKAVASQKFYEFRTKLKAKCDENGIELRVVDRWYPSSKICHCCGAIKKDLKLSDRIYH
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEE
CDCGYVEDRDFNAALNLKDALTYEVA
CCCCCEECCCCCEEEECCCCEEEECC
>Mature Secondary Structure
MRKLLKSFKTEISPTIEQKIKINKTIGTCRYVYNFYLDHNKTLYDNGEKFMTGKSFSVWL
CHHHHHHHHHHCCCCHHHHEEEECHHHHHEEEEEEEECCCCEEECCCCEEECCCEEEEEE
NNEYIPNNPDKIWIKEAYSKAVKKSIEDGCTAFTRFFKHQSAFPNFKKKGKSDVKMYFVK
CCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCEEEEEEE
NNTKDCRCERHRLNIPTLGWVRIKEKGYIPTTKDGWKIKSGTVSVKADRYYVSVLVEIPD
CCCCCCCHHHHCCCCCCCEEEEEECCCCCCCCCCCCEEECCEEEEEECEEEEEEEEECCC
VKIANNSNGGIGIDLGLKDLAIVSNGKTYKNINKSTRIKKLEKKLRREQRCLSRKYENLK
EEEECCCCCCEEEEECCCEEEEEECCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KGESTQKNIQKQKLKVQRLHHKIDNIRTDYINKSIAEIVKTKPSYITIENLNVSGMMKNR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEHHHH
HLSKAVASQKFYEFRTKLKAKCDENGIELRVVDRWYPSSKICHCCGAIKKDLKLSDRIYH
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEE
CDCGYVEDRDFNAALNLKDALTYEVA
CCCCCEECCCCCEEEECCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]