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The map label for this gene is ypsC [H]

Identifier: 238923298

GI number: 238923298

Start: 814417

End: 815688

Strand: Direct

Name: ypsC [H]

Synonym: EUBREC_0909

Alternate gene names: 238923298

Gene position: 814417-815688 (Clockwise)

Preceding gene: 238923297

Following gene: 238923299

Centisome position: 23.61

GC content: 44.65

Gene sequence:

>1272_bases
GTGCGGATATCAAAAAAAGTTGCAGAAATATGGCTGAAACTATTTAAAAAAATTGAAATTTATGCAACAATATTAGATAA
CAATGTAAAGTACAATTATAGAAAGGCAGTTACACAATATATGAATAGATTTGAGCTTGTTGTGCCATGTCATTTTGGCC
TTGAGGCAGTAGTCAAGAGGGAGATATATGATCTGGGATATGAGATAACACGTGTGGAGGACGGCAGGGTATCGTTTGAG
GGCGATGCTGAGGCTATATGCAGAGCGAATATATTCTTAAGAGGCGCAGAGAGAGTATTACTTCAGGTAGGACGCTTTAA
GGCTGCCACATTTGATGAGCTTTTTGAAAATGTAAAGGCTCTCCCATGGGAAAATTATATTCCCAAGGACGGCAGATTCT
GGGTGAAAAAGGCTTCTTCCATAAAGAGTAAGCTTTTTTCACCATCTGATATACAGTCTATCGTGAAAAAGGCTATGGTT
GAGAGAATGAAGAGGTCTTATCACATTGACTGGTTCCCGGAGGACGGAGCACAGTATCCGGTAAGGGTTTTTCTGTACAA
GGATGAGGTGATGGTGACACTTGATACATCGGGGGATTCCCTTCACAAGAGAGGATACCGTCTGGCAACGAGCAAGGCGC
CGCTGACTGAGACACTTGCAGCATCGCTCATCATGCTTACACCATGGCATGCAGACAGAATACTTGTGGATCCGTTTTGT
GGCAGTGGTACATTTCCGATAGAGGCAGCCATGATGGCAGCAAATATAGCACCCGGTATGAACAGGGAGTTTACAGCTGA
GAGCTGGACCAATATCATACCAAGAAAGCTGTGGTATGAGGCTGTGCAGGAGGCAGAGGATATGATAGATAAGGATGTGC
AGGTGGACATCCAGGGCTATGACATTGACCCTGATGTGGTGGCTGCAGCCAGGGAAAATGCCAAGAGAGCCGGAGTGGAG
CACATGATTCATTTCCAGCAGAGGGCTGTGGCTGACCTGCATCACCCGAAGAAGTACGGATTTATTATCTCAAATCCTCC
ATACGGTGAGCGACTCGAGGAGAAATCAGCGCTCCCGGCACTGTATTCACAGATTGGAGAAGCTTATAAGAGGCTTGATG
CATGGTCGATGTATCTGATTACGAGCTATGAGGATACAGAGCGCTATATCGGCAGAAAAGCTGACAAAAACAGGAAAATC
TACAATGGTATGATAAAGACATATTTTTATCAGTTTATGGGGCCTAAGCCTCCGAGAAGGAAAAAGGATTAG

Upstream 100 bases:

>100_bases
TTTTTTACTGCACGCATGGTGGAAGCAGCATGAAGCTGGCCAGATATCTGGGAAATCGCGGTTTTGATACAGCGACAGTC
ATAGGTGGATACAATGCTAT

Downstream 100 bases:

>100_bases
CAGGGTATATGAAATATTCAAAGAGATATATTGCATTTACATTAATCTTGGCACTTATCTTTGTGTCTAATTTTTACATA
TATGCAAAGGACAGCTCTAC

Product: nucleic acid methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 423

Protein sequence:

>423_residues
MRISKKVAEIWLKLFKKIEIYATILDNNVKYNYRKAVTQYMNRFELVVPCHFGLEAVVKREIYDLGYEITRVEDGRVSFE
GDAEAICRANIFLRGAERVLLQVGRFKAATFDELFENVKALPWENYIPKDGRFWVKKASSIKSKLFSPSDIQSIVKKAMV
ERMKRSYHIDWFPEDGAQYPVRVFLYKDEVMVTLDTSGDSLHKRGYRLATSKAPLTETLAASLIMLTPWHADRILVDPFC
GSGTFPIEAAMMAANIAPGMNREFTAESWTNIIPRKLWYEAVQEAEDMIDKDVQVDIQGYDIDPDVVAAARENAKRAGVE
HMIHFQQRAVADLHHPKKYGFIISNPPYGERLEEKSALPALYSQIGEAYKRLDAWSMYLITSYEDTERYIGRKADKNRKI
YNGMIKTYFYQFMGPKPPRRKKD

Sequences:

>Translated_423_residues
MRISKKVAEIWLKLFKKIEIYATILDNNVKYNYRKAVTQYMNRFELVVPCHFGLEAVVKREIYDLGYEITRVEDGRVSFE
GDAEAICRANIFLRGAERVLLQVGRFKAATFDELFENVKALPWENYIPKDGRFWVKKASSIKSKLFSPSDIQSIVKKAMV
ERMKRSYHIDWFPEDGAQYPVRVFLYKDEVMVTLDTSGDSLHKRGYRLATSKAPLTETLAASLIMLTPWHADRILVDPFC
GSGTFPIEAAMMAANIAPGMNREFTAESWTNIIPRKLWYEAVQEAEDMIDKDVQVDIQGYDIDPDVVAAARENAKRAGVE
HMIHFQQRAVADLHHPKKYGFIISNPPYGERLEEKSALPALYSQIGEAYKRLDAWSMYLITSYEDTERYIGRKADKNRKI
YNGMIKTYFYQFMGPKPPRRKKD
>Mature_423_residues
MRISKKVAEIWLKLFKKIEIYATILDNNVKYNYRKAVTQYMNRFELVVPCHFGLEAVVKREIYDLGYEITRVEDGRVSFE
GDAEAICRANIFLRGAERVLLQVGRFKAATFDELFENVKALPWENYIPKDGRFWVKKASSIKSKLFSPSDIQSIVKKAMV
ERMKRSYHIDWFPEDGAQYPVRVFLYKDEVMVTLDTSGDSLHKRGYRLATSKAPLTETLAASLIMLTPWHADRILVDPFC
GSGTFPIEAAMMAANIAPGMNREFTAESWTNIIPRKLWYEAVQEAEDMIDKDVQVDIQGYDIDPDVVAAARENAKRAGVE
HMIHFQQRAVADLHHPKKYGFIISNPPYGERLEEKSALPALYSQIGEAYKRLDAWSMYLITSYEDTERYIGRKADKNRKI
YNGMIKTYFYQFMGPKPPRRKKD

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=344, Percent_Identity=32.8488372093023, Blast_Score=177, Evalue=1e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 48943; Mature: 48943

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: PS00092 N6_MTASE ; PS01261 UPF0020

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRISKKVAEIWLKLFKKIEIYATILDNNVKYNYRKAVTQYMNRFELVVPCHFGLEAVVKR
CCCHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHCEEEEECCCCHHHHHHH
EIYDLGYEITRVEDGRVSFEGDAEAICRANIFLRGAERVLLQVGRFKAATFDELFENVKA
HHHHCCCEEEEEECCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
LPWENYIPKDGRFWVKKASSIKSKLFSPSDIQSIVKKAMVERMKRSYHIDWFPEDGAQYP
CCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
VRVFLYKDEVMVTLDTSGDSLHKRGYRLATSKAPLTETLAASLIMLTPWHADRILVDPFC
EEEEEEECEEEEEEECCCCHHHHCCCEEECCCCCHHHHHHHHHHEECCCCCCEEEECCCC
GSGTFPIEAAMMAANIAPGMNREFTAESWTNIIPRKLWYEAVQEAEDMIDKDVQVDIQGY
CCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
DIDPDVVAAARENAKRAGVEHMIHFQQRAVADLHHPKKYGFIISNPPYGERLEEKSALPA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHH
LYSQIGEAYKRLDAWSMYLITSYEDTERYIGRKADKNRKIYNGMIKTYFYQFMGPKPPRR
HHHHHHHHHHHHHHEEEEEEECCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
KKD
CCC
>Mature Secondary Structure
MRISKKVAEIWLKLFKKIEIYATILDNNVKYNYRKAVTQYMNRFELVVPCHFGLEAVVKR
CCCHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHCEEEEECCCCHHHHHHH
EIYDLGYEITRVEDGRVSFEGDAEAICRANIFLRGAERVLLQVGRFKAATFDELFENVKA
HHHHCCCEEEEEECCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
LPWENYIPKDGRFWVKKASSIKSKLFSPSDIQSIVKKAMVERMKRSYHIDWFPEDGAQYP
CCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
VRVFLYKDEVMVTLDTSGDSLHKRGYRLATSKAPLTETLAASLIMLTPWHADRILVDPFC
EEEEEEECEEEEEEECCCCHHHHCCCEEECCCCCHHHHHHHHHHEECCCCCCEEEECCCC
GSGTFPIEAAMMAANIAPGMNREFTAESWTNIIPRKLWYEAVQEAEDMIDKDVQVDIQGY
CCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
DIDPDVVAAARENAKRAGVEHMIHFQQRAVADLHHPKKYGFIISNPPYGERLEEKSALPA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHH
LYSQIGEAYKRLDAWSMYLITSYEDTERYIGRKADKNRKIYNGMIKTYFYQFMGPKPPRR
HHHHHHHHHHHHHHEEEEEEECCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
KKD
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 2423526 [H]