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The map label for this gene is yddU [C]

Identifier: 238923296

GI number: 238923296

Start: 811799

End: 813826

Strand: Direct

Name: yddU [C]

Synonym: EUBREC_0907

Alternate gene names: 238923296

Gene position: 811799-813826 (Clockwise)

Preceding gene: 238923295

Following gene: 238923297

Centisome position: 23.53

GC content: 41.77

Gene sequence:

>2028_bases
ATGAGTAATAGATTTGATGATGAAAACAATATAGAGATGGATATAAAGACCGCATTCGCATCCTGGGGAAAGTATGTTTT
TAAGTGCTTTCCGCAGGAATGCCGTTTGAGGTCTTTTTTATCAGAGGATTCATTAGATGACTCAGAAGAGAAAAATGTGG
ATATTATAAACAATCCGTTTATAGACAGCATGGTTGACAGGAATAATCTGCTGAAGGCTGTTAAACAGATTGCAGAGGGA
GAAAAATTTGCTACTGTAGTACTGCATGCCAAGGAAGGAACAGATACCTACAGGATATCATTCAAGTCGATTTGCTTTGA
TGATGATGGCAGAACAGTTGAGGCAATAGGGCTTGCTGAGCAGCTTGATGAGCGTCTTAACGAGAGTGAGATGGTGAATG
CTTTAGGAAGCAACTTCAACAGTATCTACTATGTAGATGTAGACAACAATAAGATGTATCCGTACAGGATGAATCCTTCT
GTCCGTGCTATGTTTGGAGAAGTGCTTGAGTCAAAACCGGGCTATAATGAGATGATGGAACAGTATGTAAATGCTATCGT
CTTAGAAGAGGATAAGCTTCACATGCTTTTAGAGACATCAATTAATAATCTGCGCAGGCAGTTTTTGATAAAGGATACCT
ATCAGCATGATTACCGCATCGTGAGGGATGGACAGGTACAGTATTGCAGAGCAAAGTTTGTCAATGTGTCTGGCGTGGGA
GAGCTGCACAAGATGATAGCGGGCTTTTCGGATATAAGCCCGGAGAAGCAAAGAGAGCTTGAGCGTATAGCGTATGTGGA
TGCAGTGACCGGAGGCAACAATTACGAGAGTTTTAAAAAGAAGCTGCGTGACAGAAACGTATCAGGATATCTGATTTCCA
TGGATATTCACTCCTTCAAGATAGTGAACTCCATCTGTGGTGTGGCAAAGGGCGATGAGGCGCTTAGATGGATTTCTGAA
AATATACGCGGTGTTGTAGGATATAATGACATATCAGGTCATATAAATGCAGACAGATTTGTTATTTTCTTTGCGGATGA
CAAGATAAATAAGGTTATCAGAAAGATAGAGACCATCAATTTACAGCTTATTAAGGTTTCAGAATCCTTAAAGATTCCAA
AGATTCAGCCATACTTTGGTGTGACAAAATGGGAGCCGGGAAAAAAGGTTGAGGAAGCATACGGCGAGGCCAACTTTGCC
AAGAATCGGATCAAGGAGCGGAAGGACGTGCTCTATCAGATATACAGTCAGGCCGATACAGAAAGGATTGTCGAAGAAAA
GCAGATGGAGGATAACTTCTACCGGGATTTAAATGACAATCATTTTGAGATATGGTATCAGCCCAAGTATGCTCCAAAGA
CCAACAAGCTGGTCGGTGCAGAGGGACTTGTCAGGTGGAGAAGAGAAAATAATGAGATTATTCCGCCATCCAAATTTATA
CCGCTTTTTGAAAGAAACGGCATGATTAAGGCGCTTGATGAGTATGTATTCCGCGAGGTGTGTACACATCAGAGAAGATG
GCTTGATGAAGGGAAAAAAATAGTTCCTATCTCAATCAACCTGTCCAGAGCGAGCCTGTACTTTGAGTCTGTGGTTAAAA
GATATCATGATATAGCAAGAAGAATCGGCATATACACACATCTTGTGCCTATAGAGATTACAGAGAGTGCAGCGGTCGAT
AATGATGAAATCAAGAGTATTGCGGATAAATTCCATGGCAATGGATTTCCACTTTTGGTGGATGATTTTGGCTCAGGCTA
TTCATCACTTGTTACCCTCAATATGAAGTGCTTTGATACACTCAAAATCGACAAGAGCCTGATTGACTATATAGGAGATT
CAAATGGTGAGAGGCTGCTTGTGCACACGATAGCACTGGCCAAGGAGCTGGGAATCTGCGTGACCGCCGAGGGTGTTGAG
AGTCAGGAGCAGGTAGAGTTTTTGAAGAATATAGACTGCGACAGTATACAGGGCTTTTATTATTCAAAGCCACTGCCGTT
AACAGAGTATGAGATGCTTTTGGATTGA

Upstream 100 bases:

>100_bases
AATTAGTAAAAACAAAACTTTACGAAATGACTTACTAATGATATAGTAGTGATAGGTATGAAAGAGTTTTAATAATTATT
TTATTTTTGTGGGAATTATT

Downstream 100 bases:

>100_bases
TAAATATAAAAAATATAAGCAGTATAAAAGAGCCGGTCATGTGACCGGCTCTTTTGAGGGGAGTATAAATAATTAATAAG
AGGTATAACATTGAAAAGAT

Product: sensory transduction protein kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 675; Mature: 674

Protein sequence:

>675_residues
MSNRFDDENNIEMDIKTAFASWGKYVFKCFPQECRLRSFLSEDSLDDSEEKNVDIINNPFIDSMVDRNNLLKAVKQIAEG
EKFATVVLHAKEGTDTYRISFKSICFDDDGRTVEAIGLAEQLDERLNESEMVNALGSNFNSIYYVDVDNNKMYPYRMNPS
VRAMFGEVLESKPGYNEMMEQYVNAIVLEEDKLHMLLETSINNLRRQFLIKDTYQHDYRIVRDGQVQYCRAKFVNVSGVG
ELHKMIAGFSDISPEKQRELERIAYVDAVTGGNNYESFKKKLRDRNVSGYLISMDIHSFKIVNSICGVAKGDEALRWISE
NIRGVVGYNDISGHINADRFVIFFADDKINKVIRKIETINLQLIKVSESLKIPKIQPYFGVTKWEPGKKVEEAYGEANFA
KNRIKERKDVLYQIYSQADTERIVEEKQMEDNFYRDLNDNHFEIWYQPKYAPKTNKLVGAEGLVRWRRENNEIIPPSKFI
PLFERNGMIKALDEYVFREVCTHQRRWLDEGKKIVPISINLSRASLYFESVVKRYHDIARRIGIYTHLVPIEITESAAVD
NDEIKSIADKFHGNGFPLLVDDFGSGYSSLVTLNMKCFDTLKIDKSLIDYIGDSNGERLLVHTIALAKELGICVTAEGVE
SQEQVEFLKNIDCDSIQGFYYSKPLPLTEYEMLLD

Sequences:

>Translated_675_residues
MSNRFDDENNIEMDIKTAFASWGKYVFKCFPQECRLRSFLSEDSLDDSEEKNVDIINNPFIDSMVDRNNLLKAVKQIAEG
EKFATVVLHAKEGTDTYRISFKSICFDDDGRTVEAIGLAEQLDERLNESEMVNALGSNFNSIYYVDVDNNKMYPYRMNPS
VRAMFGEVLESKPGYNEMMEQYVNAIVLEEDKLHMLLETSINNLRRQFLIKDTYQHDYRIVRDGQVQYCRAKFVNVSGVG
ELHKMIAGFSDISPEKQRELERIAYVDAVTGGNNYESFKKKLRDRNVSGYLISMDIHSFKIVNSICGVAKGDEALRWISE
NIRGVVGYNDISGHINADRFVIFFADDKINKVIRKIETINLQLIKVSESLKIPKIQPYFGVTKWEPGKKVEEAYGEANFA
KNRIKERKDVLYQIYSQADTERIVEEKQMEDNFYRDLNDNHFEIWYQPKYAPKTNKLVGAEGLVRWRRENNEIIPPSKFI
PLFERNGMIKALDEYVFREVCTHQRRWLDEGKKIVPISINLSRASLYFESVVKRYHDIARRIGIYTHLVPIEITESAAVD
NDEIKSIADKFHGNGFPLLVDDFGSGYSSLVTLNMKCFDTLKIDKSLIDYIGDSNGERLLVHTIALAKELGICVTAEGVE
SQEQVEFLKNIDCDSIQGFYYSKPLPLTEYEMLLD
>Mature_674_residues
SNRFDDENNIEMDIKTAFASWGKYVFKCFPQECRLRSFLSEDSLDDSEEKNVDIINNPFIDSMVDRNNLLKAVKQIAEGE
KFATVVLHAKEGTDTYRISFKSICFDDDGRTVEAIGLAEQLDERLNESEMVNALGSNFNSIYYVDVDNNKMYPYRMNPSV
RAMFGEVLESKPGYNEMMEQYVNAIVLEEDKLHMLLETSINNLRRQFLIKDTYQHDYRIVRDGQVQYCRAKFVNVSGVGE
LHKMIAGFSDISPEKQRELERIAYVDAVTGGNNYESFKKKLRDRNVSGYLISMDIHSFKIVNSICGVAKGDEALRWISEN
IRGVVGYNDISGHINADRFVIFFADDKINKVIRKIETINLQLIKVSESLKIPKIQPYFGVTKWEPGKKVEEAYGEANFAK
NRIKERKDVLYQIYSQADTERIVEEKQMEDNFYRDLNDNHFEIWYQPKYAPKTNKLVGAEGLVRWRRENNEIIPPSKFIP
LFERNGMIKALDEYVFREVCTHQRRWLDEGKKIVPISINLSRASLYFESVVKRYHDIARRIGIYTHLVPIEITESAAVDN
DEIKSIADKFHGNGFPLLVDDFGSGYSSLVTLNMKCFDTLKIDKSLIDYIGDSNGERLLVHTIALAKELGICVTAEGVES
QEQVEFLKNIDCDSIQGFYYSKPLPLTEYEMLLD

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=450, Percent_Identity=28.4444444444444, Blast_Score=161, Evalue=1e-40,
Organism=Escherichia coli, GI1787541, Length=458, Percent_Identity=26.8558951965066, Blast_Score=150, Evalue=3e-37,
Organism=Escherichia coli, GI1790496, Length=241, Percent_Identity=34.4398340248963, Blast_Score=143, Evalue=4e-35,
Organism=Escherichia coli, GI87081743, Length=336, Percent_Identity=27.3809523809524, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI226510982, Length=324, Percent_Identity=28.7037037037037, Blast_Score=119, Evalue=5e-28,
Organism=Escherichia coli, GI1786507, Length=260, Percent_Identity=29.6153846153846, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI1788502, Length=235, Percent_Identity=30.6382978723404, Blast_Score=114, Evalue=3e-26,
Organism=Escherichia coli, GI87081845, Length=241, Percent_Identity=31.1203319502075, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI87081980, Length=248, Percent_Identity=31.0483870967742, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI1788849, Length=441, Percent_Identity=25.8503401360544, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI1787055, Length=455, Percent_Identity=23.7362637362637, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI87082096, Length=202, Percent_Identity=29.7029702970297, Blast_Score=79, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 77899; Mature: 77768

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNRFDDENNIEMDIKTAFASWGKYVFKCFPQECRLRSFLSEDSLDDSEEKNVDIINNPF
CCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCEEECCCC
IDSMVDRNNLLKAVKQIAEGEKFATVVLHAKEGTDTYRISFKSICFDDDGRTVEAIGLAE
HHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCEEEEHHHHH
QLDERLNESEMVNALGSNFNSIYYVDVDNNKMYPYRMNPSVRAMFGEVLESKPGYNEMME
HHHHHCCHHHHHHHHCCCCCEEEEEEECCCEEEEEECCCHHHHHHHHHHHCCCCHHHHHH
QYVNAIVLEEDKLHMLLETSINNLRRQFLIKDTYQHDYRIVRDGQVQYCRAKFVNVSGVG
HHHHEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEHHEEECCCCHH
ELHKMIAGFSDISPEKQRELERIAYVDAVTGGNNYESFKKKLRDRNVSGYLISMDIHSFK
HHHHHHHCCCCCCCHHHHHHHHHHHHEEECCCCCHHHHHHHHHHCCCCEEEEEEECHHHH
IVNSICGVAKGDEALRWISENIRGVVGYNDISGHINADRFVIFFADDKINKVIRKIETIN
HHHHHHCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEEECCHHHHHHHHHHHCE
LQLIKVSESLKIPKIQPYFGVTKWEPGKKVEEAYGEANFAKNRIKERKDVLYQIYSQADT
EEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
ERIVEEKQMEDNFYRDLNDNHFEIWYQPKYAPKTNKLVGAEGLVRWRRENNEIIPPSKFI
HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCHHHHHHHHCCCCCCCCHHCC
PLFERNGMIKALDEYVFREVCTHQRRWLDEGKKIVPISINLSRASLYFESVVKRYHDIAR
CHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECHHHHHHHHHHHHHHHHHHH
RIGIYTHLVPIEITESAAVDNDEIKSIADKFHGNGFPLLVDDFGSGYSSLVTLNMKCFDT
HHHHHHEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEEEEEHHHHHH
LKIDKSLIDYIGDSNGERLLVHTIALAKELGICVTAEGVESQEQVEFLKNIDCDSIQGFY
HHHHHHHHHHHCCCCCCEEEHHHHHHHHHCCEEEEECCCCHHHHHHHHHCCCCCCCCCEE
YSKPLPLTEYEMLLD
ECCCCCCCHHHHHCC
>Mature Secondary Structure 
SNRFDDENNIEMDIKTAFASWGKYVFKCFPQECRLRSFLSEDSLDDSEEKNVDIINNPF
CCCCCCCCCCEEEHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCEEECCCC
IDSMVDRNNLLKAVKQIAEGEKFATVVLHAKEGTDTYRISFKSICFDDDGRTVEAIGLAE
HHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCEEEEHHHHH
QLDERLNESEMVNALGSNFNSIYYVDVDNNKMYPYRMNPSVRAMFGEVLESKPGYNEMME
HHHHHCCHHHHHHHHCCCCCEEEEEEECCCEEEEEECCCHHHHHHHHHHHCCCCHHHHHH
QYVNAIVLEEDKLHMLLETSINNLRRQFLIKDTYQHDYRIVRDGQVQYCRAKFVNVSGVG
HHHHEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEHHEEECCCCHH
ELHKMIAGFSDISPEKQRELERIAYVDAVTGGNNYESFKKKLRDRNVSGYLISMDIHSFK
HHHHHHHCCCCCCCHHHHHHHHHHHHEEECCCCCHHHHHHHHHHCCCCEEEEEEECHHHH
IVNSICGVAKGDEALRWISENIRGVVGYNDISGHINADRFVIFFADDKINKVIRKIETIN
HHHHHHCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEEECCHHHHHHHHHHHCE
LQLIKVSESLKIPKIQPYFGVTKWEPGKKVEEAYGEANFAKNRIKERKDVLYQIYSQADT
EEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
ERIVEEKQMEDNFYRDLNDNHFEIWYQPKYAPKTNKLVGAEGLVRWRRENNEIIPPSKFI
HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCHHHHHHHHCCCCCCCCHHCC
PLFERNGMIKALDEYVFREVCTHQRRWLDEGKKIVPISINLSRASLYFESVVKRYHDIAR
CHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECHHHHHHHHHHHHHHHHHHH
RIGIYTHLVPIEITESAAVDNDEIKSIADKFHGNGFPLLVDDFGSGYSSLVTLNMKCFDT
HHHHHHEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEEEEEHHHHHH
LKIDKSLIDYIGDSNGERLLVHTIALAKELGICVTAEGVESQEQVEFLKNIDCDSIQGFY
HHHHHHHHHHHCCCCCCEEEHHHHHHHHHCCEEEEECCCCHHHHHHHHHCCCCCCCCCEE
YSKPLPLTEYEMLLD
ECCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]