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The map label for this gene is ydcI [H]

Identifier: 238923236

GI number: 238923236

Start: 753554

End: 755914

Strand: Direct

Name: ydcI [H]

Synonym: EUBREC_0832

Alternate gene names: 238923236

Gene position: 753554-755914 (Clockwise)

Preceding gene: 238923234

Following gene: 238923237

Centisome position: 21.84

GC content: 46.12

Gene sequence:

>2361_bases
ATGGATATTATTGCTGCAATTGCAGAAGAACTGCAGATAAAAAAAGGACAGGCCGAGGCCGCTGTCAAGCTGATAGATGA
GGGAAATACCATCCCTTTTATCGCCAGATACCGAAAGGAGGCAACCGGCTCATTAAATGATGAGGTGCTCAGAAATCTCT
TCGACAGACTGACATATCTACGTAATCTTGAGGACAAGAAGCAGACAGTGCTTGCAAGCATTGAGGAGCAGGGCAAGCTT
ACGGATGAGCTTAAGAAGGCAATCCTTGAGGCACAGACACAGGTGGCGGTTGACGATTTGTACAGACCTTACCGTCCGAA
GAGAAGAACCCGTGCCACAATCGCAAAGGAAAAGGGCTTAGAGCCACTGGCACAGACCATTTTAGCGCAGGAATCGTCTG
TTGATATCATGGCAGAAGCAGCTAAATATGTGGATGCAGAAAAGGACGTGGCAGATGAAGCGGCTGCACTTGCCGGAGCA
AAGGATATCATTGCAGAGAACGTATCCGACAATGCCGATTACAGAACAAAAATCAGAGAGCTTACCATGCAAAAGGGACG
TCTTATATCGACAGCCAAGGATCCAAAGGCGGAGTCTGTCTATGAGATGTACTATGAATTTGACGAGGCTCTTTCCAAGG
TGGCAGGTCACAGAACACTCGCAATTAACCGTGGTGAGAAGGAAAAAATCCTCACAGTAAAGATAGAGGCACCGACAGAG
GATATCATAAAATATCTTAAAAAGCAGGTTATCACAAATGATGGAGCGCCTACAGCAGCCGTACTCACAGAGGTAGTGGA
GGATGCGTACAACAGGCTTATTGCCCCTGCCATAGAGCGTGAAATCAGAAACAATCTGACAGAGGAAGCAGAGGATGGTG
CCATAAAGGTATTCGGAAAGAACCTGGAGCAGCTTCTCATGCAGCCTCCAATTGCAGGACAGGTTGTGCTTGGATGGGAT
CCGGCATTCCGTACAGGCTGCAAGATTTCTGTCGTAGACCCTACAGGAAAGGTGCTCGATACCACAGTAATCTACCCAAC
AGCACCACAGAACAAGGTCGATGAGGCAAAGGCCATAATCAAAAAGCTCATAGACAAGCATCATGTCACTCTTATCTCAC
TCGGAAACGGAACAGCATCGCGTGAGTCAGAGCAGGTGATTGTTGAGCTGTTAAAGGAAATTCCGGTAAAGGTGCAGTAC
ATCATAGTAAATGAAGCAGGTGCGTCAGTATATTCAGCCAGCAAGCTTGCTACGGAGGAGTTTCCGAATTTTGATGTGGG
ACAAAGAAGTGCCACATCCATGGCGCGTAGACTTCAGGATCCGCTCGCTGAGCTTGTAAAGATTGATCCAAAGTCAATCG
GAGTCGGACAGTATCAGCACGATATGAACCAGAAAAAGCTCTCAGAGGCACTCGGAGGAGTTGTAGAGGACTGCGTAAAT
AAGGTTGGTGTAGATTTAAATACAGCATCCGTTTCACTGCTTGAGTACATATCAGGCATCTCAAAGACCATTGCCAAAAA
CATCGTGGATTACAGAGAGGAAAACGGTAAATTCACATCACGTTCACAGCTTCTTAAGGTAGCAAAGCTTGGACCGAAGG
CATTTGAACAGTGTGCAGGTTTCATGCGTATCTCAGACGGAAAGAACCCACTTGATGCCACAGGCGTGCATCCTGAGTCA
TATGATGCCACAAAGGCAGTGCTTGAAAAGCTTGGCTACACAATGGAGGATGTAAAGAACAGAAATGTAGTTGGAATCTC
AAAGAAAGTATCTGATTACAAGGCGCTCGCAGACGAGGCAGGAGTTGGTGAAATCACACTGCGTGACATCGTAAAAGAGC
TTGAAAAGCCGGCAAGAGACCCACGTGAGGATATGCCAAAGCCAATTCTAAGAAGCGATGTCCTTGAGATGAAGGACCTC
ACACCGGGTATGGTATTAAAGGGCACAGTCAGAAATGTAATAGATTTCGGATGCTTTGTGGATATAGGAGTACACCAGGA
CGGACTTGTGCATATCTCAGAGATATGTGACCGCTATATCAAGCACCCGCTTGAGGCTGTCAGTGTAGGAGACATAGTAG
ATGTGCAGGTTATGAGCGTTGACCTCAAAAAGCAGCGCATCCAGCTTACCATGAAAATCGGACAGGGCACAGACAAGGCC
GGTAAGTCAGAAAACAGCGGCAGCAGCAAAGACAGTGCTGCCAACAAGGCTGACAGAAGTAATAGAAATAACGGTGGCAG
GAATAGCAGAAACGATAGAAATGGTACAGGCAGCAAGAATAATAACAACAGAAACAAAAAGCCACACTACATAAAGGGCA
AGAAAAATAATTTCTTTGACAATATTATTCTTGATAATTAA

Upstream 100 bases:

>100_bases
TTTTGTGGATCCATAATCAAATTCCTTTCTATAAAGTTGATTTTATTGTATCACTTCATTTATAATACGAAAAGAATAAG
TTTTTTAAAGAGGTAAAAAA

Downstream 100 bases:

>100_bases
AAACACCTTGACAAAACACTTCAAAGTGCATATCATAGGTTTGTAAATAAATAGGAATTCTTCAGGGCAGGGTGAGATTC
CCTACCGGTGGTACAGCCCA

Product: transcription accessory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 786; Mature: 786

Protein sequence:

>786_residues
MDIIAAIAEELQIKKGQAEAAVKLIDEGNTIPFIARYRKEATGSLNDEVLRNLFDRLTYLRNLEDKKQTVLASIEEQGKL
TDELKKAILEAQTQVAVDDLYRPYRPKRRTRATIAKEKGLEPLAQTILAQESSVDIMAEAAKYVDAEKDVADEAAALAGA
KDIIAENVSDNADYRTKIRELTMQKGRLISTAKDPKAESVYEMYYEFDEALSKVAGHRTLAINRGEKEKILTVKIEAPTE
DIIKYLKKQVITNDGAPTAAVLTEVVEDAYNRLIAPAIEREIRNNLTEEAEDGAIKVFGKNLEQLLMQPPIAGQVVLGWD
PAFRTGCKISVVDPTGKVLDTTVIYPTAPQNKVDEAKAIIKKLIDKHHVTLISLGNGTASRESEQVIVELLKEIPVKVQY
IIVNEAGASVYSASKLATEEFPNFDVGQRSATSMARRLQDPLAELVKIDPKSIGVGQYQHDMNQKKLSEALGGVVEDCVN
KVGVDLNTASVSLLEYISGISKTIAKNIVDYREENGKFTSRSQLLKVAKLGPKAFEQCAGFMRISDGKNPLDATGVHPES
YDATKAVLEKLGYTMEDVKNRNVVGISKKVSDYKALADEAGVGEITLRDIVKELEKPARDPREDMPKPILRSDVLEMKDL
TPGMVLKGTVRNVIDFGCFVDIGVHQDGLVHISEICDRYIKHPLEAVSVGDIVDVQVMSVDLKKQRIQLTMKIGQGTDKA
GKSENSGSSKDSAANKADRSNRNNGGRNSRNDRNGTGSKNNNNRNKKPHYIKGKKNNFFDNIILDN

Sequences:

>Translated_786_residues
MDIIAAIAEELQIKKGQAEAAVKLIDEGNTIPFIARYRKEATGSLNDEVLRNLFDRLTYLRNLEDKKQTVLASIEEQGKL
TDELKKAILEAQTQVAVDDLYRPYRPKRRTRATIAKEKGLEPLAQTILAQESSVDIMAEAAKYVDAEKDVADEAAALAGA
KDIIAENVSDNADYRTKIRELTMQKGRLISTAKDPKAESVYEMYYEFDEALSKVAGHRTLAINRGEKEKILTVKIEAPTE
DIIKYLKKQVITNDGAPTAAVLTEVVEDAYNRLIAPAIEREIRNNLTEEAEDGAIKVFGKNLEQLLMQPPIAGQVVLGWD
PAFRTGCKISVVDPTGKVLDTTVIYPTAPQNKVDEAKAIIKKLIDKHHVTLISLGNGTASRESEQVIVELLKEIPVKVQY
IIVNEAGASVYSASKLATEEFPNFDVGQRSATSMARRLQDPLAELVKIDPKSIGVGQYQHDMNQKKLSEALGGVVEDCVN
KVGVDLNTASVSLLEYISGISKTIAKNIVDYREENGKFTSRSQLLKVAKLGPKAFEQCAGFMRISDGKNPLDATGVHPES
YDATKAVLEKLGYTMEDVKNRNVVGISKKVSDYKALADEAGVGEITLRDIVKELEKPARDPREDMPKPILRSDVLEMKDL
TPGMVLKGTVRNVIDFGCFVDIGVHQDGLVHISEICDRYIKHPLEAVSVGDIVDVQVMSVDLKKQRIQLTMKIGQGTDKA
GKSENSGSSKDSAANKADRSNRNNGGRNSRNDRNGTGSKNNNNRNKKPHYIKGKKNNFFDNIILDN
>Mature_786_residues
MDIIAAIAEELQIKKGQAEAAVKLIDEGNTIPFIARYRKEATGSLNDEVLRNLFDRLTYLRNLEDKKQTVLASIEEQGKL
TDELKKAILEAQTQVAVDDLYRPYRPKRRTRATIAKEKGLEPLAQTILAQESSVDIMAEAAKYVDAEKDVADEAAALAGA
KDIIAENVSDNADYRTKIRELTMQKGRLISTAKDPKAESVYEMYYEFDEALSKVAGHRTLAINRGEKEKILTVKIEAPTE
DIIKYLKKQVITNDGAPTAAVLTEVVEDAYNRLIAPAIEREIRNNLTEEAEDGAIKVFGKNLEQLLMQPPIAGQVVLGWD
PAFRTGCKISVVDPTGKVLDTTVIYPTAPQNKVDEAKAIIKKLIDKHHVTLISLGNGTASRESEQVIVELLKEIPVKVQY
IIVNEAGASVYSASKLATEEFPNFDVGQRSATSMARRLQDPLAELVKIDPKSIGVGQYQHDMNQKKLSEALGGVVEDCVN
KVGVDLNTASVSLLEYISGISKTIAKNIVDYREENGKFTSRSQLLKVAKLGPKAFEQCAGFMRISDGKNPLDATGVHPES
YDATKAVLEKLGYTMEDVKNRNVVGISKKVSDYKALADEAGVGEITLRDIVKELEKPARDPREDMPKPILRSDVLEMKDL
TPGMVLKGTVRNVIDFGCFVDIGVHQDGLVHISEICDRYIKHPLEAVSVGDIVDVQVMSVDLKKQRIQLTMKIGQGTDKA
GKSENSGSSKDSAANKADRSNRNNGGRNSRNDRNGTGSKNNNNRNKKPHYIKGKKNNFFDNIILDN

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=789, Percent_Identity=33.7135614702155, Blast_Score=421, Evalue=1e-117,
Organism=Homo sapiens, GI27597090, Length=713, Percent_Identity=23.1416549789621, Blast_Score=101, Evalue=3e-21,
Organism=Escherichia coli, GI87082262, Length=724, Percent_Identity=48.6187845303867, Blast_Score=656, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=76, Percent_Identity=42.1052631578947, Blast_Score=72, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17511129, Length=729, Percent_Identity=33.3333333333333, Blast_Score=298, Evalue=5e-81,
Organism=Caenorhabditis elegans, GI17552892, Length=598, Percent_Identity=23.5785953177258, Blast_Score=93, Evalue=5e-19,
Organism=Saccharomyces cerevisiae, GI6321552, Length=248, Percent_Identity=28.6290322580645, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI62484314, Length=758, Percent_Identity=34.5646437994723, Blast_Score=419, Evalue=1e-117,
Organism=Drosophila melanogaster, GI24640080, Length=729, Percent_Identity=22.4965706447188, Blast_Score=107, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 86674; Mature: 86674

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIIAAIAEELQIKKGQAEAAVKLIDEGNTIPFIARYRKEATGSLNDEVLRNLFDRLTYL
CCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
RNLEDKKQTVLASIEEQGKLTDELKKAILEAQTQVAVDDLYRPYRPKRRTRATIAKEKGL
HCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
EPLAQTILAQESSVDIMAEAAKYVDAEKDVADEAAALAGAKDIIAENVSDNADYRTKIRE
HHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHCCCCCCHHHHHHHH
LTMQKGRLISTAKDPKAESVYEMYYEFDEALSKVAGHRTLAINRGEKEKILTVKIEAPTE
HHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCEEEEEEEECCHH
DIIKYLKKQVITNDGAPTAAVLTEVVEDAYNRLIAPAIEREIRNNLTEEAEDGAIKVFGK
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHH
NLEQLLMQPPIAGQVVLGWDPAFRTGCKISVVDPTGKVLDTTVIYPTAPQNKVDEAKAII
HHHHHHHCCCCCCEEEECCCHHHHCCCEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHH
KKLIDKHHVTLISLGNGTASRESEQVIVELLKEIPVKVQYIIVNEAGASVYSASKLATEE
HHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHH
FPNFDVGQRSATSMARRLQDPLAELVKIDPKSIGVGQYQHDMNQKKLSEALGGVVEDCVN
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
KVGVDLNTASVSLLEYISGISKTIAKNIVDYREENGKFTSRSQLLKVAKLGPKAFEQCAG
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHC
FMRISDGKNPLDATGVHPESYDATKAVLEKLGYTMEDVKNRNVVGISKKVSDYKALADEA
CEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHCCCCEEEEHHHHHHHHHHHHHC
GVGEITLRDIVKELEKPARDPREDMPKPILRSDVLEMKDLTPGMVLKGTVRNVIDFGCFV
CCCCCHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCEE
DIGVHQDGLVHISEICDRYIKHPLEAVSVGDIVDVQVMSVDLKKQRIQLTMKIGQGTDKA
EECCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEEEEEEEHHHHHHEEEEEEECCCCCCC
GKSENSGSSKDSAANKADRSNRNNGGRNSRNDRNGTGSKNNNNRNKKPHYIKGKKNNFFD
CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCC
NIILDN
CCEECC
>Mature Secondary Structure
MDIIAAIAEELQIKKGQAEAAVKLIDEGNTIPFIARYRKEATGSLNDEVLRNLFDRLTYL
CCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
RNLEDKKQTVLASIEEQGKLTDELKKAILEAQTQVAVDDLYRPYRPKRRTRATIAKEKGL
HCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
EPLAQTILAQESSVDIMAEAAKYVDAEKDVADEAAALAGAKDIIAENVSDNADYRTKIRE
HHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHCCCCCCHHHHHHHH
LTMQKGRLISTAKDPKAESVYEMYYEFDEALSKVAGHRTLAINRGEKEKILTVKIEAPTE
HHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCEEEEEEEECCHH
DIIKYLKKQVITNDGAPTAAVLTEVVEDAYNRLIAPAIEREIRNNLTEEAEDGAIKVFGK
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHH
NLEQLLMQPPIAGQVVLGWDPAFRTGCKISVVDPTGKVLDTTVIYPTAPQNKVDEAKAII
HHHHHHHCCCCCCEEEECCCHHHHCCCEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHH
KKLIDKHHVTLISLGNGTASRESEQVIVELLKEIPVKVQYIIVNEAGASVYSASKLATEE
HHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHH
FPNFDVGQRSATSMARRLQDPLAELVKIDPKSIGVGQYQHDMNQKKLSEALGGVVEDCVN
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
KVGVDLNTASVSLLEYISGISKTIAKNIVDYREENGKFTSRSQLLKVAKLGPKAFEQCAG
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHC
FMRISDGKNPLDATGVHPESYDATKAVLEKLGYTMEDVKNRNVVGISKKVSDYKALADEA
CEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHCCCCEEEEHHHHHHHHHHHHHC
GVGEITLRDIVKELEKPARDPREDMPKPILRSDVLEMKDLTPGMVLKGTVRNVIDFGCFV
CCCCCHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCEE
DIGVHQDGLVHISEICDRYIKHPLEAVSVGDIVDVQVMSVDLKKQRIQLTMKIGQGTDKA
EECCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEEEEEEEHHHHHHEEEEEEECCCCCCC
GKSENSGSSKDSAANKADRSNRNNGGRNSRNDRNGTGSKNNNNRNKKPHYIKGKKNNFFD
CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCC
NIILDN
CCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]