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The map label for this gene is ctpA [H]

Identifier: 238923123

GI number: 238923123

Start: 660312

End: 661640

Strand: Direct

Name: ctpA [H]

Synonym: EUBREC_0716

Alternate gene names: 238923123

Gene position: 660312-661640 (Clockwise)

Preceding gene: 238923122

Following gene: 238923124

Centisome position: 19.14

GC content: 43.72

Gene sequence:

>1329_bases
ATGGATAATTCAAACAACAACGGCTTAGAATACGATGATAATTCAGATATTAGCGATAAAAAGCCTCATAGAAAGGGATT
TAGAAATGGGTTCGGTGTCGGGATTGCTACAGGTATAGTGACCACCATTGTGCTTGGATTGATTGTGCTCTTTGCATACA
CAATGATTACAGGCAGGAGCGTGCATACCGTTGCAAAAAGCGCAGATGTGCTTGACGACAAGACCGTGCAGAAAATCGAT
GAGCTTGCGAACTACATAGACGAGTATTACTATGAGGATTACGATAAGGATGATTTGGAAAACGGTCTGCTGCATGGTGT
GATGGAGGGACTAAATGATCCTTATTCGGTTTATTATACAGCGGATGAGTATAAGGAACTGCAAATTAGCACGACAGGCA
CTTATTATGGTATCGGGGCTGCGTTAAAGCAGGACCCGAACACAAAGCAGGTGACAGTTTCGAAGGTATACAGTGGTACA
CCTTCTGAGGAAGCGGGACTTAAAAAGGATGACGAAATAGTTTCTGTTGATGGTGTTGAGGCAACATCCGAGGATCTCAC
AAAGCTTGTTGCCAAAATCAGAGGTAAGGAGGGCACTAAGGTTACGCTTGAAATCAGACGTGGCGAGGAGGCTGACCCAT
TTACCGTTGAGGTGGAGCGTAAAAATGTTGAGCTGCCATCAGTGGACAGCAAGCTGCTTGACAATGGAGTAGGATATATC
CAGGTCAGTGAGTTTCAGACAAACACGGCAAGTCAGTTTGAGGATGCACTTGACGGACTTACAAATCAGGGTATGAAGGG
TCTTATAGTGGATTTGCGTGCTAATCCGGGAGGACTACTTACCGCAGTGACAGAAATGGTTGACAGACTGCTTCCGGCAG
AAACAGTTGGCAAGCTTCCTGCAGGAACTGTCGTGTATACAAAGGATAAAAACGGAAATATCCAGACCTTTGGTGATGAC
GATGGAAAACAGATTGACTGTCCTATCGTAGTGCTTGTCGATGAAAACAGCGCAAGTGCGTCTGAAATTTTTGCGGGAGC
CATGAAGGATTACAATGAGGATGGTTATATTGATGCAACACTTGTAGGCAAAAAGACCTTTGGAAAAGGAATTGTACAGA
CTATTTACAATCTTTCCGATGGCGACGCTGTAAAGATTACCACATCGAAGTACTACACACCAAACGGTCACAATATCCAC
AAAAAGGGTATCGAGCCTGATGTAGAGGTCGATTATGAATATACAGGAGATACAAATGCAGACTATGACATGCAGTATGA
TGTGCAGCTTCAGAAAGCGATTGAGGTGATGAATGAAAAGCTTAAATAA

Upstream 100 bases:

>100_bases
GGAAACATTTAAGAGTATAATAATAATTATGACGGCCTGGCTCCGATCGGAGACAGGCTGTTTTAAGTTCATATCATAAT
ATAGAGAGGACAGGACTGAA

Downstream 100 bases:

>100_bases
GATTGCATGCTTTCTCATGCTGTGCTGGATGGTAGTCATCTTTATGTTTTCGGCGGAGCCTGACACCGAGTCGTCTGAGC
TCAGCGGCAGCGTCAGCTAT

Product: carboxyl-terminal protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 442

Protein sequence:

>442_residues
MDNSNNNGLEYDDNSDISDKKPHRKGFRNGFGVGIATGIVTTIVLGLIVLFAYTMITGRSVHTVAKSADVLDDKTVQKID
ELANYIDEYYYEDYDKDDLENGLLHGVMEGLNDPYSVYYTADEYKELQISTTGTYYGIGAALKQDPNTKQVTVSKVYSGT
PSEEAGLKKDDEIVSVDGVEATSEDLTKLVAKIRGKEGTKVTLEIRRGEEADPFTVEVERKNVELPSVDSKLLDNGVGYI
QVSEFQTNTASQFEDALDGLTNQGMKGLIVDLRANPGGLLTAVTEMVDRLLPAETVGKLPAGTVVYTKDKNGNIQTFGDD
DGKQIDCPIVVLVDENSASASEIFAGAMKDYNEDGYIDATLVGKKTFGKGIVQTIYNLSDGDAVKITTSKYYTPNGHNIH
KKGIEPDVEVDYEYTGDTNADYDMQYDVQLQKAIEVMNEKLK

Sequences:

>Translated_442_residues
MDNSNNNGLEYDDNSDISDKKPHRKGFRNGFGVGIATGIVTTIVLGLIVLFAYTMITGRSVHTVAKSADVLDDKTVQKID
ELANYIDEYYYEDYDKDDLENGLLHGVMEGLNDPYSVYYTADEYKELQISTTGTYYGIGAALKQDPNTKQVTVSKVYSGT
PSEEAGLKKDDEIVSVDGVEATSEDLTKLVAKIRGKEGTKVTLEIRRGEEADPFTVEVERKNVELPSVDSKLLDNGVGYI
QVSEFQTNTASQFEDALDGLTNQGMKGLIVDLRANPGGLLTAVTEMVDRLLPAETVGKLPAGTVVYTKDKNGNIQTFGDD
DGKQIDCPIVVLVDENSASASEIFAGAMKDYNEDGYIDATLVGKKTFGKGIVQTIYNLSDGDAVKITTSKYYTPNGHNIH
KKGIEPDVEVDYEYTGDTNADYDMQYDVQLQKAIEVMNEKLK
>Mature_442_residues
MDNSNNNGLEYDDNSDISDKKPHRKGFRNGFGVGIATGIVTTIVLGLIVLFAYTMITGRSVHTVAKSADVLDDKTVQKID
ELANYIDEYYYEDYDKDDLENGLLHGVMEGLNDPYSVYYTADEYKELQISTTGTYYGIGAALKQDPNTKQVTVSKVYSGT
PSEEAGLKKDDEIVSVDGVEATSEDLTKLVAKIRGKEGTKVTLEIRRGEEADPFTVEVERKNVELPSVDSKLLDNGVGYI
QVSEFQTNTASQFEDALDGLTNQGMKGLIVDLRANPGGLLTAVTEMVDRLLPAETVGKLPAGTVVYTKDKNGNIQTFGDD
DGKQIDCPIVVLVDENSASASEIFAGAMKDYNEDGYIDATLVGKKTFGKGIVQTIYNLSDGDAVKITTSKYYTPNGHNIH
KKGIEPDVEVDYEYTGDTNADYDMQYDVQLQKAIEVMNEKLK

Specific function: Cleavage of the 16 C-terminal residues from the D1 precursor of photosystem II. May be involved in protection of the bacterium from thermal and osmotic stresses [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=320, Percent_Identity=31.5625, Blast_Score=122, Evalue=5e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 48458; Mature: 48458

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNSNNNGLEYDDNSDISDKKPHRKGFRNGFGVGIATGIVTTIVLGLIVLFAYTMITGRS
CCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
VHTVAKSADVLDDKTVQKIDELANYIDEYYYEDYDKDDLENGLLHGVMEGLNDPYSVYYT
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
ADEYKELQISTTGTYYGIGAALKQDPNTKQVTVSKVYSGTPSEEAGLKKDDEIVSVDGVE
CCCCEEEEEEECCCEEECCHHHCCCCCCCEEEEEEEECCCCCHHCCCCCCCCEEEECCCC
ATSEDLTKLVAKIRGKEGTKVTLEIRRGEEADPFTVEVERKNVELPSVDSKLLDNGVGYI
CCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCHHHHHHCCCCEE
QVSEFQTNTASQFEDALDGLTNQGMKGLIVDLRANPGGLLTAVTEMVDRLLPAETVGKLP
EEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCHHHHCCCC
AGTVVYTKDKNGNIQTFGDDDGKQIDCPIVVLVDENSASASEIFAGAMKDYNEDGYIDAT
CCEEEEEECCCCCEEECCCCCCCEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEE
LVGKKTFGKGIVQTIYNLSDGDAVKITTSKYYTPNGHNIHKKGIEPDVEVDYEYTGDTNA
EECCHHHHHHHHHHHHCCCCCCEEEEEECEEECCCCCCCHHCCCCCCCEEEEEECCCCCC
DYDMQYDVQLQKAIEVMNEKLK
CCCEEECHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDNSNNNGLEYDDNSDISDKKPHRKGFRNGFGVGIATGIVTTIVLGLIVLFAYTMITGRS
CCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
VHTVAKSADVLDDKTVQKIDELANYIDEYYYEDYDKDDLENGLLHGVMEGLNDPYSVYYT
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
ADEYKELQISTTGTYYGIGAALKQDPNTKQVTVSKVYSGTPSEEAGLKKDDEIVSVDGVE
CCCCEEEEEEECCCEEECCHHHCCCCCCCEEEEEEEECCCCCHHCCCCCCCCEEEECCCC
ATSEDLTKLVAKIRGKEGTKVTLEIRRGEEADPFTVEVERKNVELPSVDSKLLDNGVGYI
CCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCHHHHHHCCCCEE
QVSEFQTNTASQFEDALDGLTNQGMKGLIVDLRANPGGLLTAVTEMVDRLLPAETVGKLP
EEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCHHHHCCCC
AGTVVYTKDKNGNIQTFGDDDGKQIDCPIVVLVDENSASASEIFAGAMKDYNEDGYIDAT
CCEEEEEECCCCCEEECCCCCCCEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEE
LVGKKTFGKGIVQTIYNLSDGDAVKITTSKYYTPNGHNIHKKGIEPDVEVDYEYTGDTNA
EECCHHHHHHHHHHHHCCCCCCEEEEEECEEECCCCCCCHHCCCCCCCEEEEEECCCCCC
DYDMQYDVQLQKAIEVMNEKLK
CCCEEECHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8034700; 8058761; 8590279; 8905231 [H]