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The map label for this gene is ycbG [H]

Identifier: 238922925

GI number: 238922925

Start: 475421

End: 476101

Strand: Direct

Name: ycbG [H]

Synonym: EUBREC_0513

Alternate gene names: 238922925

Gene position: 475421-476101 (Clockwise)

Preceding gene: 238922924

Following gene: 238922926

Centisome position: 13.78

GC content: 42.44

Gene sequence:

>681_bases
ATGCAAAATTCCAAAGAAAAAACTCTTTCCCAAAGGATTGCAGAGAGAATTATCAAATACATACTGGAGGAAAATCTGCA
GCCGGGTGACAAGCTTCCGAACGAAACCGTAATGTGTGAACGGCTGAATGTTGGAAGAAGCTCTCTGCGTGAAGCTATGC
GAGCACTCGCATCACGTAATGTGATCACCATACGCCAAGGCTCCGGTTCATATGTTTCCGCCACTCCCGGGATGATTGAT
GATCCATTCGGCCTGACCTTTGTTGAAGATAAACAAAAGATGATTAAAGATCTGATGGAAATCAGATTTCTAATCGAACC
ATCCATAGCTGCCATGGCCGCTATCCGTGCAGATGAGACAGATATCAAAAACATACTTACTGCATGTGAAAATACCGAAA
AGCTCCTTCTTGCAAATAAAAATCACGCTGAAAAGGATATAGCATTTCATACTGCTATTGCCTTAAGCAGCAAAAATATA
GTTGTTCCAAAGCTGGTTCCTATCATCAACAGTTCAATTCCTCTGATCCGTGAGTCTGCAAAATTCACCATGCGTGATGA
AACCATCGAAATTCATCGTGAAATTGCAGATGCAATTGCAGCCCACGATGCCGTCCGTGCCCACGATGCGATGTATCTGC
ATCTGATCTACAACCGGAAGCATATAAAATCCATAAATTAA

Upstream 100 bases:

>100_bases
GAGTTACAGACAAAAAGAATGCCAATGAAATATTTGAAAGAATATTTAAACGTACAGAAAAACTAAACATCAAGGTATTG
GGCAACAGGAGGCAAATCAC

Downstream 100 bases:

>100_bases
TGACTGTCCGGTTATCACCGGCCACACTGCGATGTGACCGGCAGTACCATATTTTATGGTTCTGGCGCTTGAAATAGTCG
CCCAGCAACCTGTTTACATT

Product: GntR-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MQNSKEKTLSQRIAERIIKYILEENLQPGDKLPNETVMCERLNVGRSSLREAMRALASRNVITIRQGSGSYVSATPGMID
DPFGLTFVEDKQKMIKDLMEIRFLIEPSIAAMAAIRADETDIKNILTACENTEKLLLANKNHAEKDIAFHTAIALSSKNI
VVPKLVPIINSSIPLIRESAKFTMRDETIEIHREIADAIAAHDAVRAHDAMYLHLIYNRKHIKSIN

Sequences:

>Translated_226_residues
MQNSKEKTLSQRIAERIIKYILEENLQPGDKLPNETVMCERLNVGRSSLREAMRALASRNVITIRQGSGSYVSATPGMID
DPFGLTFVEDKQKMIKDLMEIRFLIEPSIAAMAAIRADETDIKNILTACENTEKLLLANKNHAEKDIAFHTAIALSSKNI
VVPKLVPIINSSIPLIRESAKFTMRDETIEIHREIADAIAAHDAVRAHDAMYLHLIYNRKHIKSIN
>Mature_226_residues
MQNSKEKTLSQRIAERIIKYILEENLQPGDKLPNETVMCERLNVGRSSLREAMRALASRNVITIRQGSGSYVSATPGMID
DPFGLTFVEDKQKMIKDLMEIRFLIEPSIAAMAAIRADETDIKNILTACENTEKLLLANKNHAEKDIAFHTAIALSSKNI
VVPKLVPIINSSIPLIRESAKFTMRDETIEIHREIADAIAAHDAVRAHDAMYLHLIYNRKHIKSIN

Specific function: May Be A Regulatory Protein For The Lct Genes. [C]

COG id: COG2186

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790032, Length=232, Percent_Identity=32.3275862068966, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1789353, Length=158, Percent_Identity=32.9113924050633, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI48994955, Length=229, Percent_Identity=27.5109170305677, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1786303, Length=225, Percent_Identity=27.1111111111111, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1790780, Length=226, Percent_Identity=26.9911504424779, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1789621, Length=223, Percent_Identity=26.0089686098655, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25431; Mature: 25431

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNSKEKTLSQRIAERIIKYILEENLQPGDKLPNETVMCERLNVGRSSLREAMRALASRN
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCC
VITIRQGSGSYVSATPGMIDDPFGLTFVEDKQKMIKDLMEIRFLIEPSIAAMAAIRADET
EEEEECCCCCEEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHH
DIKNILTACENTEKLLLANKNHAEKDIAFHTAIALSSKNIVVPKLVPIINSSIPLIRESA
HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHEEECCCCEEHHHHHHHHCCCCCHHHHCC
KFTMRDETIEIHREIADAIAAHDAVRAHDAMYLHLIYNRKHIKSIN
CCEECHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECHHHHCCCC
>Mature Secondary Structure
MQNSKEKTLSQRIAERIIKYILEENLQPGDKLPNETVMCERLNVGRSSLREAMRALASRN
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCC
VITIRQGSGSYVSATPGMIDDPFGLTFVEDKQKMIKDLMEIRFLIEPSIAAMAAIRADET
EEEEECCCCCEEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHH
DIKNILTACENTEKLLLANKNHAEKDIAFHTAIALSSKNIVVPKLVPIINSSIPLIRESA
HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHEEECCCCEEHHHHHHHHCCCCCHHHHCC
KFTMRDETIEIHREIADAIAAHDAVRAHDAMYLHLIYNRKHIKSIN
CCEECHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704254; 9384377 [H]