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The map label for this gene is yjdI [H]

Identifier: 238922825

GI number: 238922825

Start: 379200

End: 379679

Strand: Direct

Name: yjdI [H]

Synonym: EUBREC_0413

Alternate gene names: 238922825

Gene position: 379200-379679 (Clockwise)

Preceding gene: 238922824

Following gene: 238922826

Centisome position: 10.99

GC content: 45.21

Gene sequence:

>480_bases
ATGGGAAAAAAAGAAGCAAAGACAAATGCAATAAGAATACTGGAAACAATGAAGATTCCATATGAGGCACGCACATACGA
GTGCGATGACTTTGTGGATGCAGCTCAGATAGCAGACAAGCTGGGGCTTGACCACGCAGGCATGTACAAGACTATCACGA
CAGTCGGCAAAAGCGGCGGATACTATGTGTTTGTGGTACCGATAGATGACGAAATTGATTTCAAAAAAGCCGCAAAGGCA
GCAGGTGAGAAGTCCATAGAGATGCTGCATCTCAAGGATTTGACAAAGGTTACAGGCTATATAAGAGGCGGCTGTACATC
AATCGGAATGAAAAAACAGTATCCTACATTTATCCATGAGGCAGCTAAGGAGCAGGACAAAATCACGGTCAGCGGAGGCA
GGCTTGGGCTTCAGATTACGCTGTCACCGGATGATTTGTGCAGGGCGGCAAAGGCAGAGTATGTAGATATCATAAAATAA

Upstream 100 bases:

>100_bases
CATACAAAAATGCCGATAAGAGTGCGGACAATCAGTAAAATGAGGTAATTGCATAAAGATATGGAATATATCTTAAGCTT
ATTGGAGGAAAGATAGTATA

Downstream 100 bases:

>100_bases
TTAAAATGAGAGTTCTTTTTCCTAGGCTTTTACACGTCAGTGTGTTATAATAAAGAAAGCTGGCGATTGCTAAGACAGAC
GGTTTGGCGAATAAACCTAC

Product: YbaK/EbsC protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 158

Protein sequence:

>159_residues
MGKKEAKTNAIRILETMKIPYEARTYECDDFVDAAQIADKLGLDHAGMYKTITTVGKSGGYYVFVVPIDDEIDFKKAAKA
AGEKSIEMLHLKDLTKVTGYIRGGCTSIGMKKQYPTFIHEAAKEQDKITVSGGRLGLQITLSPDDLCRAAKAEYVDIIK

Sequences:

>Translated_159_residues
MGKKEAKTNAIRILETMKIPYEARTYECDDFVDAAQIADKLGLDHAGMYKTITTVGKSGGYYVFVVPIDDEIDFKKAAKA
AGEKSIEMLHLKDLTKVTGYIRGGCTSIGMKKQYPTFIHEAAKEQDKITVSGGRLGLQITLSPDDLCRAAKAEYVDIIK
>Mature_158_residues
GKKEAKTNAIRILETMKIPYEARTYECDDFVDAAQIADKLGLDHAGMYKTITTVGKSGGYYVFVVPIDDEIDFKKAAKAA
GEKSIEMLHLKDLTKVTGYIRGGCTSIGMKKQYPTFIHEAAKEQDKITVSGGRLGLQITLSPDDLCRAAKAEYVDIIK

Specific function: May Be Involved In The Suppression Of Transcription Of Usha. [C]

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786688, Length=158, Percent_Identity=37.9746835443038, Blast_Score=96, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 17514; Mature: 17383

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKKEAKTNAIRILETMKIPYEARTYECDDFVDAAQIADKLGLDHAGMYKTITTVGKSGG
CCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCC
YYVFVVPIDDEIDFKKAAKAAGEKSIEMLHLKDLTKVTGYIRGGCTSIGMKKQYPTFIHE
EEEEEEEECCCCCHHHHHHHCCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
AAKEQDKITVSGGRLGLQITLSPDDLCRAAKAEYVDIIK
HHCCCCEEEEECCEEEEEEEECHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GKKEAKTNAIRILETMKIPYEARTYECDDFVDAAQIADKLGLDHAGMYKTITTVGKSGG
CCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCC
YYVFVVPIDDEIDFKKAAKAAGEKSIEMLHLKDLTKVTGYIRGGCTSIGMKKQYPTFIHE
EEEEEEEECCCCCHHHHHHHCCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
AAKEQDKITVSGGRLGLQITLSPDDLCRAAKAEYVDIIK
HHCCCCEEEEECCEEEEEEEECHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]