Click here to switch to the map view.

The map label for this gene is int [H]

Identifier: 238922801

GI number: 238922801

Start: 355501

End: 356592

Strand: Direct

Name: int [H]

Synonym: EUBREC_0389

Alternate gene names: 238922801

Gene position: 355501-356592 (Clockwise)

Preceding gene: 238922800

Following gene: 238922802

Centisome position: 10.31

GC content: 38.46

Gene sequence:

>1092_bases
GTGAAAGGGGGATATGTAATGTCGGCTTCGAGAGATGAAAAGACTGGAAAATGGACAGTACAGTGCTATTACGAAAATTG
GAAAGGGGAGAAAAAGCACAAGAAGAAACGAGGGTTTGCAACAAAAAAAGAAGCATTGGAATGGGAAAGAGAGTTTCTAA
AAAGTACCTCGGCAAACATGGAAATGATGTTAGGAGCATTTGTTGATGTGTATTTTCAGGATAAGGCAGGGGAATTAAAG
GAACGCACGATTAAAAATAAGCAGTATATGATAGAAGCTCATGTTTTACCATATTTCGCTAATAAGCGTATGAATGAGAT
TACACCCTCTGATATTATCCAATGGCAAAATGAAATGAGGGCAAAAGGGTATTCACAGACCTATTTACGAATGGTGCAAA
ATCAGATAACCGCATTGTTTACTCACGCGTGTAATATTTACAATCTTGGTAACAATCCCTGCAAAAAGGTTAAGAAAATG
GGTAAGGCAGATGCGGATAAGCTGAATTTTTGGACGAAAGCGGAGTATGACAGTTTTATAAGAGGTATAGACAAGGAGAG
CCGATATTTTGTGATTTTTGAAATACTCTTTTGGACTGGCTGTAGAGAGGGAGAAATGCTTGCCCTCACAAAAAGCGATA
TTGACTTTGAAAATAATCAAATTAGTATTACGAAAACTTATTACAGAACGGAACGTAGGGATATTATTACAACACCAAAA
ACAGAGCAATCGATTCGAGTGATTGATATTCCAGAATTTCTGAAAAAAGAGATAGAAGCGTATGTGAACCGTTGTTATGG
CTTGCCGGATAATGAAAGACTGTTTCCGATTGTAGCAGAAGCGGTACAGCACAAGCTGAAGCGTGAATGTGCAAAATCGG
GAGTAAAGCAGATTAGAGTGCATGATTTACGCCATAGTCATGTGGCTTATCTCATCAATCAAGGCGTACAGCCATTGATA
ATCAAAGAAAGGTTAGGGCATAGGGATATAAAAATCACGCTGAATACTTACGGACATTTATATCCGAATCAGCAAAAGAA
AGTGGCAGATATGCTGAATGCTACAAGAAATGAAAATGCCCCTGCCGATTGA

Upstream 100 bases:

>100_bases
AAGAATTGCAGAGCAAAGGTTATTTGGTGGTTGCCGGAAAAGTACCAAAGGCATTTTGGGAAACAAAATTTTATGGTTAC
AATCAGACAAATCAGACTGC

Downstream 100 bases:

>100_bases
CAAGGACATTTCAGTACAAGGCAGAGCCTATGTAACTATATCTCGCAAATATAGTATAGCAAAGGCTCTGCTGAAACTCA
ATTAAAACTTTTAGCGGAGG

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 363

Protein sequence:

>363_residues
MKGGYVMSASRDEKTGKWTVQCYYENWKGEKKHKKKRGFATKKEALEWEREFLKSTSANMEMMLGAFVDVYFQDKAGELK
ERTIKNKQYMIEAHVLPYFANKRMNEITPSDIIQWQNEMRAKGYSQTYLRMVQNQITALFTHACNIYNLGNNPCKKVKKM
GKADADKLNFWTKAEYDSFIRGIDKESRYFVIFEILFWTGCREGEMLALTKSDIDFENNQISITKTYYRTERRDIITTPK
TEQSIRVIDIPEFLKKEIEAYVNRCYGLPDNERLFPIVAEAVQHKLKRECAKSGVKQIRVHDLRHSHVAYLINQGVQPLI
IKERLGHRDIKITLNTYGHLYPNQQKKVADMLNATRNENAPAD

Sequences:

>Translated_363_residues
MKGGYVMSASRDEKTGKWTVQCYYENWKGEKKHKKKRGFATKKEALEWEREFLKSTSANMEMMLGAFVDVYFQDKAGELK
ERTIKNKQYMIEAHVLPYFANKRMNEITPSDIIQWQNEMRAKGYSQTYLRMVQNQITALFTHACNIYNLGNNPCKKVKKM
GKADADKLNFWTKAEYDSFIRGIDKESRYFVIFEILFWTGCREGEMLALTKSDIDFENNQISITKTYYRTERRDIITTPK
TEQSIRVIDIPEFLKKEIEAYVNRCYGLPDNERLFPIVAEAVQHKLKRECAKSGVKQIRVHDLRHSHVAYLINQGVQPLI
IKERLGHRDIKITLNTYGHLYPNQQKKVADMLNATRNENAPAD
>Mature_363_residues
MKGGYVMSASRDEKTGKWTVQCYYENWKGEKKHKKKRGFATKKEALEWEREFLKSTSANMEMMLGAFVDVYFQDKAGELK
ERTIKNKQYMIEAHVLPYFANKRMNEITPSDIIQWQNEMRAKGYSQTYLRMVQNQITALFTHACNIYNLGNNPCKKVKKM
GKADADKLNFWTKAEYDSFIRGIDKESRYFVIFEILFWTGCREGEMLALTKSDIDFENNQISITKTYYRTERRDIITTPK
TEQSIRVIDIPEFLKKEIEAYVNRCYGLPDNERLFPIVAEAVQHKLKRECAKSGVKQIRVHDLRHSHVAYLINQGVQPLI
IKERLGHRDIKITLNTYGHLYPNQQKKVADMLNATRNENAPAD

Specific function: Putative integrase that is involved in the insertion of the integrative and conjugative element ICEBs1. Required for the excision of ICEBs1 from the donor cell genome and subsequent integration in the recipient cell genome. Appears not to be transferred t

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1787607, Length=357, Percent_Identity=21.8487394957983, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 42559; Mature: 42559

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGGYVMSASRDEKTGKWTVQCYYENWKGEKKHKKKRGFATKKEALEWEREFLKSTSANM
CCCCEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCH
EMMLGAFVDVYFQDKAGELKERTIKNKQYMIEAHVLPYFANKRMNEITPSDIIQWQNEMR
HHHHHHHHHHEECCCCCHHHHHHHCCCCEEEEEEHHHHHHCCCCCCCCHHHHHHHHHHHH
AKGYSQTYLRMVQNQITALFTHACNIYNLGNNPCKKVKKMGKADADKLNFWTKAEYDSFI
HCCCHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHHHHHHCCCCCHHCCCCHHHHHHHHH
RGIDKESRYFVIFEILFWTGCREGEMLALTKSDIDFENNQISITKTYYRTERRDIITTPK
HCCCCCCCEEEEEEEHHHCCCCCCCEEEEECCCCCCCCCEEEEEEHHHHCCCCCEECCCC
TEQSIRVIDIPEFLKKEIEAYVNRCYGLPDNERLFPIVAEAVQHKLKRECAKSGVKQIRV
CCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
HDLRHSHVAYLINQGVQPLIIKERLGHRDIKITLNTYGHLYPNQQKKVADMLNATRNENA
HHHHHHHHHHHHHCCCCCEEHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCC
PAD
CCC
>Mature Secondary Structure
MKGGYVMSASRDEKTGKWTVQCYYENWKGEKKHKKKRGFATKKEALEWEREFLKSTSANM
CCCCEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCH
EMMLGAFVDVYFQDKAGELKERTIKNKQYMIEAHVLPYFANKRMNEITPSDIIQWQNEMR
HHHHHHHHHHEECCCCCHHHHHHHCCCCEEEEEEHHHHHHCCCCCCCCHHHHHHHHHHHH
AKGYSQTYLRMVQNQITALFTHACNIYNLGNNPCKKVKKMGKADADKLNFWTKAEYDSFI
HCCCHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHHHHHHCCCCCHHCCCCHHHHHHHHH
RGIDKESRYFVIFEILFWTGCREGEMLALTKSDIDFENNQISITKTYYRTERRDIITTPK
HCCCCCCCEEEEEEEHHHCCCCCCCEEEEECCCCCCCCCEEEEEEHHHHCCCCCEECCCC
TEQSIRVIDIPEFLKKEIEAYVNRCYGLPDNERLFPIVAEAVQHKLKRECAKSGVKQIRV
CCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
HDLRHSHVAYLINQGVQPLIIKERLGHRDIKITLNTYGHLYPNQQKKVADMLNATRNENA
HHHHHHHHHHHHHCCCCCEEHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCC
PAD
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]