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The map label for this gene is nifU [H]

Identifier: 238922733

GI number: 238922733

Start: 286733

End: 287179

Strand: Direct

Name: nifU [H]

Synonym: EUBREC_0309

Alternate gene names: 238922733

Gene position: 286733-287179 (Clockwise)

Preceding gene: 238922732

Following gene: 238922734

Centisome position: 8.31

GC content: 47.87

Gene sequence:

>447_bases
ATGGCATACAGTGAAAAGGTAATGGACCATTTTAACCATCCAAGAAACGTAGGAGAGATGGAGAATCCAAGTGGTGTCGG
CACAGTAGGAAACGCAAAGTGCGGAGACATCATGAGAATGTATCTGGATATAGATGACAACGGCATTATTCAGGAGGCAA
AATTCAAGACCTTCGGATGCGGCGCAGCAGTTGCAACAAGCAGTATGGCAACAGAGCTCGTAAAGGGCAAGACAATCCAG
GAGGCGCTTGAGGTTACAAACAAGGCAGTTATGGAGGCACTTGACGGACTTCCACCTGTAAAGGTACACTGCTCACTTCT
CGCAGAGGAGGCAATCCATGCAGCACTCTGGGATTACGCAGAGAAAAACGGCATCAAGATCGAGGGACTTGAGAAGCCTG
TAAATGATATCAGCGAGAAGGAAGAGGCGCCTGAGGAAGACTATTAA

Upstream 100 bases:

>100_bases
TAAAGAAAAACGGCAAAGCAGAGGCATAAATGATCAGGTCAAAATTATAGTGACTATCACAACATTAATATATACATGAA
AATTAGGAGGAACTAAGGAC

Downstream 100 bases:

>100_bases
TGAAAAAGAAGGTTGTAGTAGGAATGTCGGGCGGAGTGGATTCGTCAGTAGCGGCATATTTATTAAAGGAACAGGGATAC
GATGTCATCGGAGTCACAAT

Product: NifU protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 147

Protein sequence:

>148_residues
MAYSEKVMDHFNHPRNVGEMENPSGVGTVGNAKCGDIMRMYLDIDDNGIIQEAKFKTFGCGAAVATSSMATELVKGKTIQ
EALEVTNKAVMEALDGLPPVKVHCSLLAEEAIHAALWDYAEKNGIKIEGLEKPVNDISEKEEAPEEDY

Sequences:

>Translated_148_residues
MAYSEKVMDHFNHPRNVGEMENPSGVGTVGNAKCGDIMRMYLDIDDNGIIQEAKFKTFGCGAAVATSSMATELVKGKTIQ
EALEVTNKAVMEALDGLPPVKVHCSLLAEEAIHAALWDYAEKNGIKIEGLEKPVNDISEKEEAPEEDY
>Mature_147_residues
AYSEKVMDHFNHPRNVGEMENPSGVGTVGNAKCGDIMRMYLDIDDNGIIQEAKFKTFGCGAAVATSSMATELVKGKTIQE
ALEVTNKAVMEALDGLPPVKVHCSLLAEEAIHAALWDYAEKNGIKIEGLEKPVNDISEKEEAPEEDY

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Homo sapiens, GI56699456, Length=124, Percent_Identity=53.2258064516129, Blast_Score=140, Evalue=4e-34,
Organism=Homo sapiens, GI24307953, Length=124, Percent_Identity=52.4193548387097, Blast_Score=137, Evalue=3e-33,
Organism=Escherichia coli, GI1788878, Length=125, Percent_Identity=53.6, Blast_Score=145, Evalue=2e-36,
Organism=Caenorhabditis elegans, GI17543474, Length=124, Percent_Identity=54.8387096774194, Blast_Score=140, Evalue=2e-34,
Organism=Saccharomyces cerevisiae, GI6325122, Length=125, Percent_Identity=49.6, Blast_Score=130, Evalue=6e-32,
Organism=Saccharomyces cerevisiae, GI6324800, Length=125, Percent_Identity=48.8, Blast_Score=129, Evalue=3e-31,
Organism=Drosophila melanogaster, GI21355597, Length=128, Percent_Identity=51.5625, Blast_Score=135, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011339
- InterPro:   IPR002871 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 16115; Mature: 15984

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYSEKVMDHFNHPRNVGEMENPSGVGTVGNAKCGDIMRMYLDIDDNGIIQEAKFKTFGC
CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
GAAVATSSMATELVKGKTIQEALEVTNKAVMEALDGLPPVKVHCSLLAEEAIHAALWDYA
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
EKNGIKIEGLEKPVNDISEKEEAPEEDY
HCCCCEEECCCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure 
AYSEKVMDHFNHPRNVGEMENPSGVGTVGNAKCGDIMRMYLDIDDNGIIQEAKFKTFGC
CHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
GAAVATSSMATELVKGKTIQEALEVTNKAVMEALDGLPPVKVHCSLLAEEAIHAALWDYA
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
EKNGIKIEGLEKPVNDISEKEEAPEEDY
HCCCCEEECCCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]