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The map label for this gene is deoC [H]

Identifier: 238922718

GI number: 238922718

Start: 274701

End: 275411

Strand: Direct

Name: deoC [H]

Synonym: EUBREC_0293

Alternate gene names: 238922718

Gene position: 274701-275411 (Clockwise)

Preceding gene: 238922717

Following gene: 238922719

Centisome position: 7.96

GC content: 45.43

Gene sequence:

>711_bases
GTGAGGATTGCGCCGGAGAATAAGTCAGACATAAAACACAGAAACGGAGAACAGACATTGGATATAAATGAAATTTTAAA
ACACGTTGACCATACACTTTTATCCCCACAGGCTACATGGGACGAAATCAGGCAGATATGCGATGATGCGATAAAATATC
ACACAGCATCGGTCTGCATACCGCCGAGCTATGTAAGTCAGGCGTCAAAGTATCTGGGTGAAAGGGTAAAGGTCTGTACA
GTGATAGGCTTCCCTAACGGATATTCGACCACTGCGGTGAAAGCCTTTGAGACAGAGGATGCCCTTGCAAACGGAGCGAA
GGAGATAGATATGGTCATCAATATCGGCTGGCTCAAGGATAAAAGGTATGAGCTGATAGAGGATGAAATAAAGAAGCTCA
AGTCCATATGCAAGGATAAGGTGCTTAAAGTCATCATCGAGACCTGCTTTCTCACAGATGATGAGAAAATCAGGATGTGC
GATATCACAACGAGCGCAGGGGCTGATTACATCAAGACATCTACAGGCTTTGGCACGGCAGGTGCGACCTTTGATGATAT
AAAGCTGTTTTCAGTGCATATCGGAGAGGGTGTGAAGATGAAGGCTGCCGGAGGCATTTCTTCATTAGATGATGCAGAAA
GATTTCTTGAGCTTGGCGCTGACAGGCTTGGGACAAGCCGTGTGGTGAAGCTTATTAAGGCTATGGAATGA

Upstream 100 bases:

>100_bases
GCAAATCAGGAGAGGGAAAAGCTCGGGCTTGAGAATCCTGTGGTACGCGATACTGACATGGCGGTTCAGGTGGCGGTTTC
GGCAGTGCGAAATCTCATTA

Downstream 100 bases:

>100_bases
ATTTTCGTATACAATAAATAACCGGGGAATTATATATGGATAAAAAAACAATTGAAAAACTGATTGATACAGCCATTGCA
CAGCTTGATTTTTCATATGC

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MRIAPENKSDIKHRNGEQTLDINEILKHVDHTLLSPQATWDEIRQICDDAIKYHTASVCIPPSYVSQASKYLGERVKVCT
VIGFPNGYSTTAVKAFETEDALANGAKEIDMVINIGWLKDKRYELIEDEIKKLKSICKDKVLKVIIETCFLTDDEKIRMC
DITTSAGADYIKTSTGFGTAGATFDDIKLFSVHIGEGVKMKAAGGISSLDDAERFLELGADRLGTSRVVKLIKAME

Sequences:

>Translated_236_residues
MRIAPENKSDIKHRNGEQTLDINEILKHVDHTLLSPQATWDEIRQICDDAIKYHTASVCIPPSYVSQASKYLGERVKVCT
VIGFPNGYSTTAVKAFETEDALANGAKEIDMVINIGWLKDKRYELIEDEIKKLKSICKDKVLKVIIETCFLTDDEKIRMC
DITTSAGADYIKTSTGFGTAGATFDDIKLFSVHIGEGVKMKAAGGISSLDDAERFLELGADRLGTSRVVKLIKAME
>Mature_236_residues
MRIAPENKSDIKHRNGEQTLDINEILKHVDHTLLSPQATWDEIRQICDDAIKYHTASVCIPPSYVSQASKYLGERVKVCT
VIGFPNGYSTTAVKAFETEDALANGAKEIDMVINIGWLKDKRYELIEDEIKKLKSICKDKVLKVIIETCFLTDDEKIRMC
DITTSAGADYIKTSTGFGTAGATFDDIKLFSVHIGEGVKMKAAGGISSLDDAERFLELGADRLGTSRVVKLIKAME

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=226, Percent_Identity=33.6283185840708, Blast_Score=87, Evalue=1e-17,
Organism=Escherichia coli, GI1790841, Length=213, Percent_Identity=31.4553990610329, Blast_Score=83, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17533015, Length=237, Percent_Identity=29.535864978903, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI19922098, Length=188, Percent_Identity=32.4468085106383, Blast_Score=72, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 26122; Mature: 26122

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIAPENKSDIKHRNGEQTLDINEILKHVDHTLLSPQATWDEIRQICDDAIKYHTASVCI
CCCCCCCCHHHHHCCCCCEECHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCEEE
PPSYVSQASKYLGERVKVCTVIGFPNGYSTTAVKAFETEDALANGAKEIDMVINIGWLKD
CHHHHHHHHHHHHHHEEEEEEEECCCCCCCCEEEECCCHHHHHCCCHHEEEEEEECCCCC
KRYELIEDEIKKLKSICKDKVLKVIIETCFLTDDEKIRMCDITTSAGADYIKTSTGFGTA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEECCCCCCCC
GATFDDIKLFSVHIGEGVKMKAAGGISSLDDAERFLELGADRLGTSRVVKLIKAME
CCCCCCEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHCHHHCCHHHHHHHHHHCC
>Mature Secondary Structure
MRIAPENKSDIKHRNGEQTLDINEILKHVDHTLLSPQATWDEIRQICDDAIKYHTASVCI
CCCCCCCCHHHHHCCCCCEECHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCEEE
PPSYVSQASKYLGERVKVCTVIGFPNGYSTTAVKAFETEDALANGAKEIDMVINIGWLKD
CHHHHHHHHHHHHHHEEEEEEEECCCCCCCCEEEECCCHHHHHCCCHHEEEEEEECCCCC
KRYELIEDEIKKLKSICKDKVLKVIIETCFLTDDEKIRMCDITTSAGADYIKTSTGFGTA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEECCCCCCCC
GATFDDIKLFSVHIGEGVKMKAAGGISSLDDAERFLELGADRLGTSRVVKLIKAME
CCCCCCEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHCHHHCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA