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The map label for this gene is ytcP [H]

Identifier: 238922680

GI number: 238922680

Start: 239078

End: 239980

Strand: Direct

Name: ytcP [H]

Synonym: EUBREC_0255

Alternate gene names: 238922680

Gene position: 239078-239980 (Clockwise)

Preceding gene: 238922679

Following gene: 238922681

Centisome position: 6.93

GC content: 38.98

Gene sequence:

>903_bases
ATGGAAAAAGATATGACGATAAAAATCAAATATTCACGGACTGATAAAATTGTTCTTGGAATTGGATATACACTTCTTGG
GTTGTTTGTGCTTGCAATAATTGTTCCGTTAGTATATGTAGTGCTGGCATCTTTCATGGATCCGACAGTACTTAACAATC
AGGGACTGAGCTTCAACATAAAGGACTGGACTATTGATGCATACAGACGAGTTCTGGAAAATGACATGATATGGCGCGGA
TTTTTTAATTCGTTTTTTTACTCAATAGCGTTTGCGGCAATCTCAGTATTTGTCACAATCCTGGCAGCATATCCTATGTC
TAAAAAGGAATTTGTCGGAAGAAAATTTTTCAATGTGATTTTTATTATCACAATGTTTTTTGGAGGAGGAATGATTCCTA
CATTCATCCTTATAAATCAGCTCCATATGGTAAACACCGTATGGGCAATCCTCATTCCGGGCGCTTTCAATGTGTGGAAT
ATGATTTTGGCGAGAACCTATTATCAGTCAGTGCCAAATGAGCTTCGTGAGGCATCAGCCATCGACGGAGCAAATGAAAT
ACAGCATTTCTTTAAGATTATGCTTCCGGTTTGTAAGCCGATTATTGCGGTGCTTATGCTTTGGTCATTTGTAGGAATGT
GGAACAGCTACTTTGATGCAATGATTTACCTGAATGACGCAAATCTCCAGCCATTACAGCTTGTACTGCGTTCAATTCTC
GTGCAGAATACACCTCAGCCGGGCATGATTGCAGATATCCAGAGTACAGCTGAGATGGCAAAGGTTGCAGAGCAGCTCAA
GTACGCTACAATTGTTGTATCAAGTTTACCACTTTTGATTATGTATCCATTTTTCCAGAAATATTTTGATAAAGGAATCA
TGGTTGGATCTGTTAAGGGCTAA

Upstream 100 bases:

>100_bases
TGGTCTTTTCAACTCGGTAATCAACGTAATATTGCTGATTATAGTCAATGCGGTTGTAAAGAAGCTAAACGATGGTGAAG
GAATCTAGGAGGAAAGTGCA

Downstream 100 bases:

>100_bases
CAGAAAGGATGAGTATGGATATGAAAAAAAGAAGCTTCAAAAAATTAATTACACTTTCGCTTACACTTGCAATGCTGACA
GGTGTGGCAGGCTGTGGAAA

Product: ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MEKDMTIKIKYSRTDKIVLGIGYTLLGLFVLAIIVPLVYVVLASFMDPTVLNNQGLSFNIKDWTIDAYRRVLENDMIWRG
FFNSFFYSIAFAAISVFVTILAAYPMSKKEFVGRKFFNVIFIITMFFGGGMIPTFILINQLHMVNTVWAILIPGAFNVWN
MILARTYYQSVPNELREASAIDGANEIQHFFKIMLPVCKPIIAVLMLWSFVGMWNSYFDAMIYLNDANLQPLQLVLRSIL
VQNTPQPGMIADIQSTAEMAKVAEQLKYATIVVSSLPLLIMYPFFQKYFDKGIMVGSVKG

Sequences:

>Translated_300_residues
MEKDMTIKIKYSRTDKIVLGIGYTLLGLFVLAIIVPLVYVVLASFMDPTVLNNQGLSFNIKDWTIDAYRRVLENDMIWRG
FFNSFFYSIAFAAISVFVTILAAYPMSKKEFVGRKFFNVIFIITMFFGGGMIPTFILINQLHMVNTVWAILIPGAFNVWN
MILARTYYQSVPNELREASAIDGANEIQHFFKIMLPVCKPIIAVLMLWSFVGMWNSYFDAMIYLNDANLQPLQLVLRSIL
VQNTPQPGMIADIQSTAEMAKVAEQLKYATIVVSSLPLLIMYPFFQKYFDKGIMVGSVKG
>Mature_300_residues
MEKDMTIKIKYSRTDKIVLGIGYTLLGLFVLAIIVPLVYVVLASFMDPTVLNNQGLSFNIKDWTIDAYRRVLENDMIWRG
FFNSFFYSIAFAAISVFVTILAAYPMSKKEFVGRKFFNVIFIITMFFGGGMIPTFILINQLHMVNTVWAILIPGAFNVWN
MILARTYYQSVPNELREASAIDGANEIQHFFKIMLPVCKPIIAVLMLWSFVGMWNSYFDAMIYLNDANLQPLQLVLRSIL
VQNTPQPGMIADIQSTAEMAKVAEQLKYATIVVSSLPLLIMYPFFQKYFDKGIMVGSVKG

Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=293, Percent_Identity=26.6211604095563, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1789860, Length=218, Percent_Identity=25.6880733944954, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1790464, Length=146, Percent_Identity=28.7671232876712, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34143; Mature: 34143

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKDMTIKIKYSRTDKIVLGIGYTLLGLFVLAIIVPLVYVVLASFMDPTVLNNQGLSFNI
CCCCEEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE
KDWTIDAYRRVLENDMIWRGFFNSFFYSIAFAAISVFVTILAAYPMSKKEFVGRKFFNVI
CCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
FIITMFFGGGMIPTFILINQLHMVNTVWAILIPGAFNVWNMILARTYYQSVPNELREASA
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IDGANEIQHFFKIMLPVCKPIIAVLMLWSFVGMWNSYFDAMIYLNDANLQPLQLVLRSIL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHH
VQNTPQPGMIADIQSTAEMAKVAEQLKYATIVVSSLPLLIMYPFFQKYFDKGIMVGSVKG
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCC
>Mature Secondary Structure
MEKDMTIKIKYSRTDKIVLGIGYTLLGLFVLAIIVPLVYVVLASFMDPTVLNNQGLSFNI
CCCCEEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE
KDWTIDAYRRVLENDMIWRGFFNSFFYSIAFAAISVFVTILAAYPMSKKEFVGRKFFNVI
CCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
FIITMFFGGGMIPTFILINQLHMVNTVWAILIPGAFNVWNMILARTYYQSVPNELREASA
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IDGANEIQHFFKIMLPVCKPIIAVLMLWSFVGMWNSYFDAMIYLNDANLQPLQLVLRSIL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHH
VQNTPQPGMIADIQSTAEMAKVAEQLKYATIVVSSLPLLIMYPFFQKYFDKGIMVGSVKG
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377; 8763940 [H]