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The map label for this gene is cph2 [H]

Identifier: 238922669

GI number: 238922669

Start: 225798

End: 227447

Strand: Direct

Name: cph2 [H]

Synonym: EUBREC_0244

Alternate gene names: 238922669

Gene position: 225798-227447 (Clockwise)

Preceding gene: 238922668

Following gene: 238922670

Centisome position: 6.55

GC content: 44.06

Gene sequence:

>1650_bases
GTGGAGTTTAATGAATACAATGAGAGTGTGAAAAACTGGACAAATGGCATTCTTGACAATTACAGAAAGGATGCCGAGCT
CACAATCAGATATTGCCATGAGCTGATAGATTACGGAGAAAAGACAGCAGATTCAAAGCTCCTGGGCTTCGGATACTATC
ATCTTGCCATGATACTTTATTGCCTGAATGACTACGATAACATTTTTGATATCGTGGTCAGGGCGATAGATCATCTGGAG
AAGGCGCAGAGCTGGAGCATGCTGGCGCGCGCATGCAATATACTTGGTATCATCACGTCAGGCAGAGGCAATCAGCCGGT
AGCATATGACTATTATCTGGATGGACTGATGTACTGCAAGAAGTATGGCCTGTTGGAAGAACAGAGCATTATAAATGTCA
ATTGCGGAGCTTTAAATATCAAAGTGGGCAGATATAAGGAGGCCATGGAATATTTTCAAAAAGCCATGGAATACATAGCT
TCCGCACCGGATGAACCTTCATATCACACCAGGATGATATCTCTTTATGAGAATATGATAAACTGCAAGGTACTGGAGAG
TGACTTTACCGGAATAGATGAGATTCTTGAGATTGTGGAGAGGGAGCATCTGCCGTATGCAGATGCAATCGACAGGCTTG
GAATGCTTATCAGCAGAACCTTTTACATGCATAAAAGCGGACAGATTGAAAAACGTGACGAGTGTATCAGGCGCATTGAT
GGTGTAATCACGCAGGATATGCTTTTTATGGATCTGATAGAGGATTTCTTTGTGTATCTCGAGGTGCTTTTCGAGAGTGA
AAAGATTGATGAATTCTGGCATCTGATGGAGCTTATGGAGCCGATGATAAACAATCTTAAGGTCACAAGCATGCAGATGA
GACTTTTAGGTCTTAAAATCAGATTTTACAGAAAGCACCATATGGGTGCAGAGTATCTGCAGGCGGCAGGGCTGTACTAT
GAGCTTTCCGAGCGCAAGGAGCTTGAGGCCAAGGCTATGATAAAAGAGGTCATAGAGCTTAGGGCGAATTTCGAGAAGGT
AAATCGTGCCAAGAAAAAAATTGAGAAGGAGAATAAGCTTCTTGCGGCGCAGTCTGAGACAGATCCGCTTACAGGCATGG
CAAACAGGCGAAAGCTTAATATACAGGCGGATGAGATGTTTTCGCATGCTCATAAATGTGGTCACAATTTTGCTATTGAG
ATACTGGATGTGGATTATTTCAAGGAGTACAATGATAATTACGGGCATCAGGAGGGGGACAGATGTCTGATTGCGATTGC
GGACTGTATAAGCAAAGTTGCGGGAGTACATGGAGGTTTTTGTGCCAGATACGGCGGGGACGAGTTTGTAGTCATATACG
AGAATATATCAAAGGAAGATGCTAAAGAATATGTGGAGGAGCTTCGCCGCAAGGTTATGGAGCTGACTCTGCCACACCGG
TTTTCAAAGATGCTGCCTATTGTCACAATCACACAGGGCATGTATTGCGATGTACCAAAAGAAGAAAACAGAGTGTGGGA
TTTTTTACATGTGGCAGATGAGATACTATACAGCGTAAAGACAGACAACCGTGGCAGCTGCAGAGTGGTCGACAGAGCAG
AGTTTATGCTTATGTCAGGCTATGGCACTACGATTCAGGGGCAGGCCTGA

Upstream 100 bases:

>100_bases
ATACTATACTGTTGAGGGCACCAATGTGTATTTTGCTATGGAACAGGATGGAAAACCGGTCAATCCTATGGACTATTTCG
GAGATATATAGAGGTGAAAA

Downstream 100 bases:

>100_bases
TATCATATTGTCATGTCATAAGCACAGCGTTGATTATTGAGATGGACAAAGCAGATATGGATGAAAATTATACATATATT
GTAAGGTGTGCTGACGGCAC

Product: putative regulatory components of sensory transduction system

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 549; Mature: 549

Protein sequence:

>549_residues
MEFNEYNESVKNWTNGILDNYRKDAELTIRYCHELIDYGEKTADSKLLGFGYYHLAMILYCLNDYDNIFDIVVRAIDHLE
KAQSWSMLARACNILGIITSGRGNQPVAYDYYLDGLMYCKKYGLLEEQSIINVNCGALNIKVGRYKEAMEYFQKAMEYIA
SAPDEPSYHTRMISLYENMINCKVLESDFTGIDEILEIVEREHLPYADAIDRLGMLISRTFYMHKSGQIEKRDECIRRID
GVITQDMLFMDLIEDFFVYLEVLFESEKIDEFWHLMELMEPMINNLKVTSMQMRLLGLKIRFYRKHHMGAEYLQAAGLYY
ELSERKELEAKAMIKEVIELRANFEKVNRAKKKIEKENKLLAAQSETDPLTGMANRRKLNIQADEMFSHAHKCGHNFAIE
ILDVDYFKEYNDNYGHQEGDRCLIAIADCISKVAGVHGGFCARYGGDEFVVIYENISKEDAKEYVEELRRKVMELTLPHR
FSKMLPIVTITQGMYCDVPKEENRVWDFLHVADEILYSVKTDNRGSCRVVDRAEFMLMSGYGTTIQGQA

Sequences:

>Translated_549_residues
MEFNEYNESVKNWTNGILDNYRKDAELTIRYCHELIDYGEKTADSKLLGFGYYHLAMILYCLNDYDNIFDIVVRAIDHLE
KAQSWSMLARACNILGIITSGRGNQPVAYDYYLDGLMYCKKYGLLEEQSIINVNCGALNIKVGRYKEAMEYFQKAMEYIA
SAPDEPSYHTRMISLYENMINCKVLESDFTGIDEILEIVEREHLPYADAIDRLGMLISRTFYMHKSGQIEKRDECIRRID
GVITQDMLFMDLIEDFFVYLEVLFESEKIDEFWHLMELMEPMINNLKVTSMQMRLLGLKIRFYRKHHMGAEYLQAAGLYY
ELSERKELEAKAMIKEVIELRANFEKVNRAKKKIEKENKLLAAQSETDPLTGMANRRKLNIQADEMFSHAHKCGHNFAIE
ILDVDYFKEYNDNYGHQEGDRCLIAIADCISKVAGVHGGFCARYGGDEFVVIYENISKEDAKEYVEELRRKVMELTLPHR
FSKMLPIVTITQGMYCDVPKEENRVWDFLHVADEILYSVKTDNRGSCRVVDRAEFMLMSGYGTTIQGQA
>Mature_549_residues
MEFNEYNESVKNWTNGILDNYRKDAELTIRYCHELIDYGEKTADSKLLGFGYYHLAMILYCLNDYDNIFDIVVRAIDHLE
KAQSWSMLARACNILGIITSGRGNQPVAYDYYLDGLMYCKKYGLLEEQSIINVNCGALNIKVGRYKEAMEYFQKAMEYIA
SAPDEPSYHTRMISLYENMINCKVLESDFTGIDEILEIVEREHLPYADAIDRLGMLISRTFYMHKSGQIEKRDECIRRID
GVITQDMLFMDLIEDFFVYLEVLFESEKIDEFWHLMELMEPMINNLKVTSMQMRLLGLKIRFYRKHHMGAEYLQAAGLYY
ELSERKELEAKAMIKEVIELRANFEKVNRAKKKIEKENKLLAAQSETDPLTGMANRRKLNIQADEMFSHAHKCGHNFAIE
ILDVDYFKEYNDNYGHQEGDRCLIAIADCISKVAGVHGGFCARYGGDEFVVIYENISKEDAKEYVEELRRKVMELTLPHR
FSKMLPIVTITQGMYCDVPKEENRVWDFLHVADEILYSVKTDNRGSCRVVDRAEFMLMSGYGTTIQGQA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081977, Length=121, Percent_Identity=33.8842975206612, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI145693134, Length=204, Percent_Identity=28.4313725490196, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1787802, Length=184, Percent_Identity=30.4347826086957, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1787262, Length=170, Percent_Identity=31.1764705882353, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1786584, Length=184, Percent_Identity=27.7173913043478, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1787541, Length=165, Percent_Identity=29.6969696969697, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI87081881, Length=176, Percent_Identity=28.4090909090909, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI87082007, Length=114, Percent_Identity=35.9649122807018, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI1787816, Length=174, Percent_Identity=31.0344827586207, Blast_Score=63, Evalue=4e-11,
Organism=Escherichia coli, GI87081974, Length=160, Percent_Identity=26.875, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 63916; Mature: 63916

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFNEYNESVKNWTNGILDNYRKDAELTIRYCHELIDYGEKTADSKLLGFGYYHLAMILY
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
CLNDYDNIFDIVVRAIDHLEKAQSWSMLARACNILGIITSGRGNQPVAYDYYLDGLMYCK
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCEEEHHHHHHHHHHH
KYGLLEEQSIINVNCGALNIKVGRYKEAMEYFQKAMEYIASAPDEPSYHTRMISLYENMI
HCCCCCCCCEEEEECCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
NCKVLESDFTGIDEILEIVEREHLPYADAIDRLGMLISRTFYMHKSGQIEKRDECIRRID
CCEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
GVITQDMLFMDLIEDFFVYLEVLFESEKIDEFWHLMELMEPMINNLKVTSMQMRLLGLKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
RFYRKHHMGAEYLQAAGLYYELSERKELEAKAMIKEVIELRANFEKVNRAKKKIEKENKL
HHHHHHCCCHHHHHHCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCE
LAAQSETDPLTGMANRRKLNIQADEMFSHAHKCGHNFAIEILDVDYFKEYNDNYGHQEGD
EEECCCCCCCCCCCCCCEECCCHHHHHHHHHHCCCCCEEEEEEHHHHHHHCCCCCCCCCC
RCLIAIADCISKVAGVHGGFCARYGGDEFVVIYENISKEDAKEYVEELRRKVMELTLPHR
HHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHH
FSKMLPIVTITQGMYCDVPKEENRVWDFLHVADEILYSVKTDNRGSCRVVDRAEFMLMSG
HHHHCCCEEECCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHEEEEEC
YGTTIQGQA
CCCEECCCC
>Mature Secondary Structure
MEFNEYNESVKNWTNGILDNYRKDAELTIRYCHELIDYGEKTADSKLLGFGYYHLAMILY
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
CLNDYDNIFDIVVRAIDHLEKAQSWSMLARACNILGIITSGRGNQPVAYDYYLDGLMYCK
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCEEEHHHHHHHHHHH
KYGLLEEQSIINVNCGALNIKVGRYKEAMEYFQKAMEYIASAPDEPSYHTRMISLYENMI
HCCCCCCCCEEEEECCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
NCKVLESDFTGIDEILEIVEREHLPYADAIDRLGMLISRTFYMHKSGQIEKRDECIRRID
CCEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
GVITQDMLFMDLIEDFFVYLEVLFESEKIDEFWHLMELMEPMINNLKVTSMQMRLLGLKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
RFYRKHHMGAEYLQAAGLYYELSERKELEAKAMIKEVIELRANFEKVNRAKKKIEKENKL
HHHHHHCCCHHHHHHCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCE
LAAQSETDPLTGMANRRKLNIQADEMFSHAHKCGHNFAIEILDVDYFKEYNDNYGHQEGD
EEECCCCCCCCCCCCCCEECCCHHHHHHHHHHCCCCCEEEEEEHHHHHHHCCCCCCCCCC
RCLIAIADCISKVAGVHGGFCARYGGDEFVVIYENISKEDAKEYVEELRRKVMELTLPHR
HHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHH
FSKMLPIVTITQGMYCDVPKEENRVWDFLHVADEILYSVKTDNRGSCRVVDRAEFMLMSG
HHHHCCCEEECCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHEEEEEC
YGTTIQGQA
CCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]