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The map label for this gene is yocS [H]

Identifier: 238922620

GI number: 238922620

Start: 184931

End: 185959

Strand: Direct

Name: yocS [H]

Synonym: EUBREC_0195

Alternate gene names: 238922620

Gene position: 184931-185959 (Clockwise)

Preceding gene: 238922619

Following gene: 238922621

Centisome position: 5.36

GC content: 44.7

Gene sequence:

>1029_bases
ATGAAAGCATTACAAAAAGTAAGTAAATTTTTATCAGACTACACATCGATAGTTGTCATAGCAATCGCCGTAGTCACATT
TCTGGTTCCGAATCTGATGGCCTGGGTAAATCAGATGCTGTTTGTGGATCCGGTATCCAACAAGTTCACATGTCAGTCAA
TCATTATCGGAATCATCATGTTTAGTATGGGACTTACACTTACGACACAGGATTTCAAGATACTTGCACAGAGACCATTT
GATATATGTGTAGGTGCAATCGCACAGTATCTTATCATGCCGTTTCTCGCATTTGGTATCTCAAAGGCATTGAATCTGCC
TGACGGAATCGCACTTGGACTTATCCTCGTAGGCTGCTGTCCCGGTGGTGTTTCTTCAAACATTATGTCATACCTCTGCG
GTGGTGATGTGGCATTCTCAGTTGGAATGACAACAGTTTCCACATTGCTCTCACCATTTATGACACCGCTTCTGGTATCA
TTGCTTGCAAGCGGAACACATGTCTCAATCAAGGCGCTTCCGATGTTTGTGTCAATCATTGAGACTGTAATCTTTCCTGT
AGCGGTTGGATTTTTACTCAACTACCTGCTTGGAAAGAAAAAGGCATTTGCCGAGGCTCAGAAGGTCATGCCGGGTATTG
CGGTGCTTGGTCTGGCATTCGTTGTAGGTGGTGTTGTATCATCACAGGGCTCAAAGTTCTTTACATCAGGAGTAGTAATT
TTTGCGGCAGTTCTGTTACATAACGGACTTGGATATCTGCTCGGATACGGTGCAGGAAAGCTGGTAGGCATGAACACAGC
CAAGAAGAGAACCATCTCTATCGAGGTTGGTATGCAGAATGCAGGTCTTGCCACAAACCTTGCCACCACTACAGCACAGT
TTGCTTCAACACCTGAATCAGCCATCATCTGTGCAGTGTCATGTACATGGCATTCAATCTCAGGCACACTGCTTGCCGGA
GCCTTTGCATTAAAGGACAAAATGGCTGCTAAAAAGGCAGAAGAAGCCGCTGAGACAAAGACAGCATAA

Upstream 100 bases:

>100_bases
GGATTATTTCGTCCCTTTTCAGATTATGTCAATCTGGAAAGGGATTTTTTAATTCCATAAAAGAGTTTTAGTGAGCAGAA
AAATGTTAAGGAGGCTTACA

Downstream 100 bases:

>100_bases
AGAGAATGAATACCTATTATAACCGATTGGTAAATTAAACAAAAATTATAGAAATTAAAAATAAATTATGTATAAAATAT
TTATTGAAATTTGCTAAAAA

Product: sodium-dependent transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MKALQKVSKFLSDYTSIVVIAIAVVTFLVPNLMAWVNQMLFVDPVSNKFTCQSIIIGIIMFSMGLTLTTQDFKILAQRPF
DICVGAIAQYLIMPFLAFGISKALNLPDGIALGLILVGCCPGGVSSNIMSYLCGGDVAFSVGMTTVSTLLSPFMTPLLVS
LLASGTHVSIKALPMFVSIIETVIFPVAVGFLLNYLLGKKKAFAEAQKVMPGIAVLGLAFVVGGVVSSQGSKFFTSGVVI
FAAVLLHNGLGYLLGYGAGKLVGMNTAKKRTISIEVGMQNAGLATNLATTTAQFASTPESAIICAVSCTWHSISGTLLAG
AFALKDKMAAKKAEEAAETKTA

Sequences:

>Translated_342_residues
MKALQKVSKFLSDYTSIVVIAIAVVTFLVPNLMAWVNQMLFVDPVSNKFTCQSIIIGIIMFSMGLTLTTQDFKILAQRPF
DICVGAIAQYLIMPFLAFGISKALNLPDGIALGLILVGCCPGGVSSNIMSYLCGGDVAFSVGMTTVSTLLSPFMTPLLVS
LLASGTHVSIKALPMFVSIIETVIFPVAVGFLLNYLLGKKKAFAEAQKVMPGIAVLGLAFVVGGVVSSQGSKFFTSGVVI
FAAVLLHNGLGYLLGYGAGKLVGMNTAKKRTISIEVGMQNAGLATNLATTTAQFASTPESAIICAVSCTWHSISGTLLAG
AFALKDKMAAKKAEEAAETKTA
>Mature_342_residues
MKALQKVSKFLSDYTSIVVIAIAVVTFLVPNLMAWVNQMLFVDPVSNKFTCQSIIIGIIMFSMGLTLTTQDFKILAQRPF
DICVGAIAQYLIMPFLAFGISKALNLPDGIALGLILVGCCPGGVSSNIMSYLCGGDVAFSVGMTTVSTLLSPFMTPLLVS
LLASGTHVSIKALPMFVSIIETVIFPVAVGFLLNYLLGKKKAFAEAQKVMPGIAVLGLAFVVGGVVSSQGSKFFTSGVVI
FAAVLLHNGLGYLLGYGAGKLVGMNTAKKRTISIEVGMQNAGLATNLATTTAQFASTPESAIICAVSCTWHSISGTLLAG
AFALKDKMAAKKAEEAAETKTA

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

Organism=Homo sapiens, GI4506973, Length=259, Percent_Identity=31.6602316602317, Blast_Score=119, Evalue=5e-27,
Organism=Homo sapiens, GI4506971, Length=249, Percent_Identity=30.5220883534137, Blast_Score=89, Evalue=7e-18,
Organism=Homo sapiens, GI37537552, Length=231, Percent_Identity=29.004329004329, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI58219066, Length=234, Percent_Identity=29.0598290598291, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI215422368, Length=272, Percent_Identity=31.25, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI215422370, Length=272, Percent_Identity=31.25, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI9790143, Length=272, Percent_Identity=31.25, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI24308414, Length=234, Percent_Identity=28.2051282051282, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI115533076, Length=130, Percent_Identity=32.3076923076923, Blast_Score=68, Evalue=8e-12,
Organism=Drosophila melanogaster, GI18859699, Length=313, Percent_Identity=26.1980830670927, Blast_Score=74, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 35775; Mature: 35775

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKALQKVSKFLSDYTSIVVIAIAVVTFLVPNLMAWVNQMLFVDPVSNKFTCQSIIIGIIM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHH
FSMGLTLTTQDFKILAQRPFDICVGAIAQYLIMPFLAFGISKALNLPDGIALGLILVGCC
HHCCCEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
PGGVSSNIMSYLCGGDVAFSVGMTTVSTLLSPFMTPLLVSLLASGTHVSIKALPMFVSII
CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHH
ETVIFPVAVGFLLNYLLGKKKAFAEAQKVMPGIAVLGLAFVVGGVVSSQGSKFFTSGVVI
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
FAAVLLHNGLGYLLGYGAGKLVGMNTAKKRTISIEVGMQNAGLATNLATTTAQFASTPES
HHHHHHHCCHHHHHHCCCCCEEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCC
AIICAVSCTWHSISGTLLAGAFALKDKMAAKKAEEAAETKTA
EEEEEEEECHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKALQKVSKFLSDYTSIVVIAIAVVTFLVPNLMAWVNQMLFVDPVSNKFTCQSIIIGIIM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHH
FSMGLTLTTQDFKILAQRPFDICVGAIAQYLIMPFLAFGISKALNLPDGIALGLILVGCC
HHCCCEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
PGGVSSNIMSYLCGGDVAFSVGMTTVSTLLSPFMTPLLVSLLASGTHVSIKALPMFVSII
CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHH
ETVIFPVAVGFLLNYLLGKKKAFAEAQKVMPGIAVLGLAFVVGGVVSSQGSKFFTSGVVI
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
FAAVLLHNGLGYLLGYGAGKLVGMNTAKKRTISIEVGMQNAGLATNLATTTAQFASTPES
HHHHHHHCCHHHHHHCCCCCEEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCC
AIICAVSCTWHSISGTLLAGAFALKDKMAAKKAEEAAETKTA
EEEEEEEECHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]