| Definition | Eubacterium rectale ATCC 33656, complete genome. |
|---|---|
| Accession | NC_012781 |
| Length | 3,449,685 |
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The map label for this gene is hsdR [H]
Identifier: 238922596
GI number: 238922596
Start: 165437
End: 167752
Strand: Direct
Name: hsdR [H]
Synonym: EUBREC_0170
Alternate gene names: 238922596
Gene position: 165437-167752 (Clockwise)
Preceding gene: 238922594
Following gene: 238922597
Centisome position: 4.8
GC content: 40.41
Gene sequence:
>2316_bases ATGCGTGAGCTGGGATTCAAGCGAGTGCTGTTTCTCGTACACAGAGGTCAGCTTGCAAGACAGACAAAGAAATCATATGA AAAGATTTTTGATAAATCAGTTTCTATGGGACTTGTCGGTGCAGGGTACAGTGACTATGACAGGGATTATGTTTTTGCAA CGGTACAGACCTTAAATCGTGATGAGCATTTGAGAAAATATGCACCGGATGACTTTGATTGCATAATTTTGGACGAGGCA CACCACAGCTCGGCTAACACATACCAGAAGGTGATGAACTATTTTACACCAAAGCTGTGGCTTGGAATGACAGCGACCCC TGATAAGCGCGATGATGATATTGACGGAAAAAACATTTACCAGATTTTTAATTATCAGATTGCGTATGAGATTCGTTTGC AGCAGGCTATGGAGGAAAACATGCTGTGCCCGTTCCATTACTTTGGAATAACAGATGTTTCACTGCTTGGTGACAAGGAG ATAAAGAGTAAAAAGCTTACAGAATCATCGTTCAACCAGCTTGTTGGTGATGAGAGGGTAAAGCATATCATTGAGCAGGC CAATTATTTTGGACATAGCGGCGACAGGGTGAAGGGACTGATTTTTTGCAGCAGGATAGATGAATCAGTCGAATTATCGA ATAAGTTTAATCAGACAATAAATCCTGAGACAGGCAGATTTTTCCGTACAATCGCATTAAATGGAGATGCCACAGAGGAG GAGAGACAGAGAGCCTTTGAGCGGCTTGCGATGGATGAAAATACGTTAGATACCACTAACAAAACTAATGCAGATCAGAT ATTTGACACGGAGAGAACAGAGAAAACGGATAAAGTAGATAAAGCCGATGAAAACATGCAGCCTCTGGATTACATATTTT CCGTCGAGATTTTAAATGAGGGTGTTGATATCGTGGAGGTAAACCAGGTCATCATGCTCAGACCGACAGAATCGCCAATT GTATTTATACAGCAGCTGGGACGTGGACTTAGAAAGGCAAATGGCAAGGAATATGTTGTTATACTTGATTTCATTGGCAA CTATAACAACAATTTTATGATACCAGTCGCATTGTCGGGCGACCGCTCTTACAATGCAGATACAATCAGAAAGTATGTTA TCAGCGGAAATAATACGATTCCCGGCGCTTCGACAGTGCATTTTGATGAGATTGCAAAGGACAGGATTTTTGCGTCGATA GGCAAAATAAAGGGTATGAAATCCATTATAAGAGAGAGCTATGTTTCTTTGAAAAACAGGCTTGGAAGAGTGCCGTACCT ATTGGATTTTTATGAAAATGGAGAGGTAGACCCGCTTGTAATAATAAAAGAGTACAAGACCTATCAGGCATTTCTTGAAG CGGTTGAGAAGGAGCTTTATACCGGCAGATTAAATGAGCAGGAAAAAACAACTCTTGAGTATTTGTCTAAAACTATCCTA AGTGGTACGAGACCGTTTGAATTGGAGATTTTAAGGCAGCTTATGAAGAAACCGTCTCTTTCAATGAAAGAGATAAGAGA GGTTTTCACACAAAGATACGATTACGAGGTAAATGTGCAGTCTCTTGACAATGCGGCTGATGTGTTGCAGGGAAAGTTTG TCAGCAAGGATGATGAGTACAAGAGATTTTGCAGAATAGATATTCTAAAGGAGGATAACAATAATATTTTCCGCAGGATG AATAACTTTACCACAAGGCTTCAAAATGAAGAGTTCAAAAAGCAGATAGATGACATAATAGAGGTAGGACTCAAAAGATA CCATGATAAATATCAGACCGCACTCAAAAATGAGAGTCCGTTTGTATTGTATGAGAAATACTCCAGGCGTGATGTTAGTC TGTTGATGAATTGTGGTAGGGATCTTTCCTCTACCATGTACGGAATGAAGCGCATAGATGATGATGTATTTATCTTTGTC ACATATCATAAAGAGGAAAGCACAGACGAGCAGAAAAACTATGTAGATGGAAAGCCGGATTACGCGGATGCGTTTGAAGA TAATATGATTTTCAGATGGGATTCGCAGATTGGCAGGGGCGTGGACAGCTCATATGTTTCAGATGTAGTGAACACAAAAA GAAAGCATCTGCTCGTGAAAAAGAGTGATGCGGAGTCAAATTTTTACTATATGGGAGAGTTTGATATAGTTGATGTGCGC GCTGCCAGAAAGCGTGATAACAATGGCAAAGAGCGCGATATCACCAAGTTTGAGATGAAGATGCACCACCCTGTAAGAGA GGATCTGCTTCGATATCTGCAGAGCAATTTACAACAAAGATTACAAAATAATACACAGGAGCTTAAGGCAATATGA
Upstream 100 bases:
>100_bases GTAAAGATGCCATTTGAGAAAATGAAAATTACTTAAAAAAGTCCCCATCACACCCTTGACACGAGGGGGTACCGGAAAAA CATATGCATCTGCGTTTGCC
Downstream 100 bases:
>100_bases AAACAGTACGCGTAGTGGCTGCCGTCATAAGAGCAGTCAATAAAGAAAATAAACCGATTATATTTGCAACCCAAAGAGGC TACGGAGAGTTCAAGGGCGG
Product: DNA/RNA helicase
Products: NA
Alternate protein names: R.EcoAI [H]
Number of amino acids: Translated: 771; Mature: 771
Protein sequence:
>771_residues MRELGFKRVLFLVHRGQLARQTKKSYEKIFDKSVSMGLVGAGYSDYDRDYVFATVQTLNRDEHLRKYAPDDFDCIILDEA HHSSANTYQKVMNYFTPKLWLGMTATPDKRDDDIDGKNIYQIFNYQIAYEIRLQQAMEENMLCPFHYFGITDVSLLGDKE IKSKKLTESSFNQLVGDERVKHIIEQANYFGHSGDRVKGLIFCSRIDESVELSNKFNQTINPETGRFFRTIALNGDATEE ERQRAFERLAMDENTLDTTNKTNADQIFDTERTEKTDKVDKADENMQPLDYIFSVEILNEGVDIVEVNQVIMLRPTESPI VFIQQLGRGLRKANGKEYVVILDFIGNYNNNFMIPVALSGDRSYNADTIRKYVISGNNTIPGASTVHFDEIAKDRIFASI GKIKGMKSIIRESYVSLKNRLGRVPYLLDFYENGEVDPLVIIKEYKTYQAFLEAVEKELYTGRLNEQEKTTLEYLSKTIL SGTRPFELEILRQLMKKPSLSMKEIREVFTQRYDYEVNVQSLDNAADVLQGKFVSKDDEYKRFCRIDILKEDNNNIFRRM NNFTTRLQNEEFKKQIDDIIEVGLKRYHDKYQTALKNESPFVLYEKYSRRDVSLLMNCGRDLSSTMYGMKRIDDDVFIFV TYHKEESTDEQKNYVDGKPDYADAFEDNMIFRWDSQIGRGVDSSYVSDVVNTKRKHLLVKKSDAESNFYYMGEFDIVDVR AARKRDNNGKERDITKFEMKMHHPVREDLLRYLQSNLQQRLQNNTQELKAI
Sequences:
>Translated_771_residues MRELGFKRVLFLVHRGQLARQTKKSYEKIFDKSVSMGLVGAGYSDYDRDYVFATVQTLNRDEHLRKYAPDDFDCIILDEA HHSSANTYQKVMNYFTPKLWLGMTATPDKRDDDIDGKNIYQIFNYQIAYEIRLQQAMEENMLCPFHYFGITDVSLLGDKE IKSKKLTESSFNQLVGDERVKHIIEQANYFGHSGDRVKGLIFCSRIDESVELSNKFNQTINPETGRFFRTIALNGDATEE ERQRAFERLAMDENTLDTTNKTNADQIFDTERTEKTDKVDKADENMQPLDYIFSVEILNEGVDIVEVNQVIMLRPTESPI VFIQQLGRGLRKANGKEYVVILDFIGNYNNNFMIPVALSGDRSYNADTIRKYVISGNNTIPGASTVHFDEIAKDRIFASI GKIKGMKSIIRESYVSLKNRLGRVPYLLDFYENGEVDPLVIIKEYKTYQAFLEAVEKELYTGRLNEQEKTTLEYLSKTIL SGTRPFELEILRQLMKKPSLSMKEIREVFTQRYDYEVNVQSLDNAADVLQGKFVSKDDEYKRFCRIDILKEDNNNIFRRM NNFTTRLQNEEFKKQIDDIIEVGLKRYHDKYQTALKNESPFVLYEKYSRRDVSLLMNCGRDLSSTMYGMKRIDDDVFIFV TYHKEESTDEQKNYVDGKPDYADAFEDNMIFRWDSQIGRGVDSSYVSDVVNTKRKHLLVKKSDAESNFYYMGEFDIVDVR AARKRDNNGKERDITKFEMKMHHPVREDLLRYLQSNLQQRLQNNTQELKAI >Mature_771_residues MRELGFKRVLFLVHRGQLARQTKKSYEKIFDKSVSMGLVGAGYSDYDRDYVFATVQTLNRDEHLRKYAPDDFDCIILDEA HHSSANTYQKVMNYFTPKLWLGMTATPDKRDDDIDGKNIYQIFNYQIAYEIRLQQAMEENMLCPFHYFGITDVSLLGDKE IKSKKLTESSFNQLVGDERVKHIIEQANYFGHSGDRVKGLIFCSRIDESVELSNKFNQTINPETGRFFRTIALNGDATEE ERQRAFERLAMDENTLDTTNKTNADQIFDTERTEKTDKVDKADENMQPLDYIFSVEILNEGVDIVEVNQVIMLRPTESPI VFIQQLGRGLRKANGKEYVVILDFIGNYNNNFMIPVALSGDRSYNADTIRKYVISGNNTIPGASTVHFDEIAKDRIFASI GKIKGMKSIIRESYVSLKNRLGRVPYLLDFYENGEVDPLVIIKEYKTYQAFLEAVEKELYTGRLNEQEKTTLEYLSKTIL SGTRPFELEILRQLMKKPSLSMKEIREVFTQRYDYEVNVQSLDNAADVLQGKFVSKDDEYKRFCRIDILKEDNNNIFRRM NNFTTRLQNEEFKKQIDDIIEVGLKRYHDKYQTALKNESPFVLYEKYSRRDVSLLMNCGRDLSSTMYGMKRIDDDVFIFV TYHKEESTDEQKNYVDGKPDYADAFEDNMIFRWDSQIGRGVDSSYVSDVVNTKRKHLLVKKSDAESNFYYMGEFDIVDVR AARKRDNNGKERDITKFEMKMHHPVREDLLRYLQSNLQQRLQNNTQELKAI
Specific function: The EcoAI enzyme recognizes 5'-GAGN(7)GTCA-3'. Subunit R is required for both nuclease and ATPase activities, but not for modification [H]
COG id: COG1061
COG function: function code KL; DNA or RNA helicases of superfamily II
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6320539, Length=370, Percent_Identity=24.0540540540541, Blast_Score=92, Evalue=2e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR006935 - InterPro: IPR013670 - InterPro: IPR007409 [H]
Pfam domain/function: PF08463 EcoEI_R_C; PF04313 HSDR_N; PF04851 ResIII [H]
EC number: =3.1.21.3 [H]
Molecular weight: Translated: 90053; Mature: 90053
Theoretical pI: Translated: 5.78; Mature: 5.78
Prosite motif: PS00228 TUBULIN_B_AUTOREG
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRELGFKRVLFLVHRGQLARQTKKSYEKIFDKSVSMGLVGAGYSDYDRDYVFATVQTLNR CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEEHHHHCC DEHLRKYAPDDFDCIILDEAHHSSANTYQKVMNYFTPKLWLGMTATPDKRDDDIDGKNIY HHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCHHEECCCCCCCCCCCCCCCCHHH QIFNYQIAYEIRLQQAMEENMLCPFHYFGITDVSLLGDKEIKSKKLTESSFNQLVGDERV HHHCEEEEEEHHHHHHHHHCCCCCEEECCCCEEECCCCHHHHHHHCCHHHHHHHHHHHHH KHIIEQANYFGHSGDRVKGLIFCSRIDESVELSNKFNQTINPETGRFFRTIALNGDATEE HHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHCCCCCCCCCCEEEEEEECCCCCHH ERQRAFERLAMDENTLDTTNKTNADQIFDTERTEKTDKVDKADENMQPLDYIFSVEILNE HHHHHHHHHHCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHCCCCCCCCHHHHEEHHHHHC GVDIVEVNQVIMLRPTESPIVFIQQLGRGLRKANGKEYVVILDFIGNYNNNFMIPVALSG CCCEEEECCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEEEEECC DRSYNADTIRKYVISGNNTIPGASTVHFDEIAKDRIFASIGKIKGMKSIIRESYVSLKNR CCCCCHHHHHHHHEECCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGRVPYLLDFYENGEVDPLVIIKEYKTYQAFLEAVEKELYTGRLNEQEKTTLEYLSKTIL CCCCCEEEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH SGTRPFELEILRQLMKKPSLSMKEIREVFTQRYDYEVNVQSLDNAADVLQGKFVSKDDEY CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEHHHHCCHHHHHHCCCCCCCHHH KRFCRIDILKEDNNNIFRRMNNFTTRLQNEEFKKQIDDIIEVGLKRYHDKYQTALKNESP HHHEEEEEEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC FVLYEKYSRRDVSLLMNCGRDLSSTMYGMKRIDDDVFIFVTYHKEESTDEQKNYVDGKPD EEEEECCCCCHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHCCCCCCCC YADAFEDNMIFRWDSQIGRGVDSSYVSDVVNTKRKHLLVKKSDAESNFYYMGEFDIVDVR HHHHHCCCEEEEECHHHCCCCCHHHHHHHHHHHHHEEEEEECCCCCCEEEECCEEEEEHH AARKRDNNGKERDITKFEMKMHHPVREDLLRYLQSNLQQRLQNNTQELKAI HHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHCC >Mature Secondary Structure MRELGFKRVLFLVHRGQLARQTKKSYEKIFDKSVSMGLVGAGYSDYDRDYVFATVQTLNR CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEEHHHHCC DEHLRKYAPDDFDCIILDEAHHSSANTYQKVMNYFTPKLWLGMTATPDKRDDDIDGKNIY HHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCHHEECCCCCCCCCCCCCCCCHHH QIFNYQIAYEIRLQQAMEENMLCPFHYFGITDVSLLGDKEIKSKKLTESSFNQLVGDERV HHHCEEEEEEHHHHHHHHHCCCCCEEECCCCEEECCCCHHHHHHHCCHHHHHHHHHHHHH KHIIEQANYFGHSGDRVKGLIFCSRIDESVELSNKFNQTINPETGRFFRTIALNGDATEE HHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHCCCCCCCCCCEEEEEEECCCCCHH ERQRAFERLAMDENTLDTTNKTNADQIFDTERTEKTDKVDKADENMQPLDYIFSVEILNE HHHHHHHHHHCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHCCCCCCCCHHHHEEHHHHHC GVDIVEVNQVIMLRPTESPIVFIQQLGRGLRKANGKEYVVILDFIGNYNNNFMIPVALSG CCCEEEECCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEEEEECC DRSYNADTIRKYVISGNNTIPGASTVHFDEIAKDRIFASIGKIKGMKSIIRESYVSLKNR CCCCCHHHHHHHHEECCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGRVPYLLDFYENGEVDPLVIIKEYKTYQAFLEAVEKELYTGRLNEQEKTTLEYLSKTIL CCCCCEEEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH SGTRPFELEILRQLMKKPSLSMKEIREVFTQRYDYEVNVQSLDNAADVLQGKFVSKDDEY CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEHHHHCCHHHHHHCCCCCCCHHH KRFCRIDILKEDNNNIFRRMNNFTTRLQNEEFKKQIDDIIEVGLKRYHDKYQTALKNESP HHHEEEEEEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC FVLYEKYSRRDVSLLMNCGRDLSSTMYGMKRIDDDVFIFVTYHKEESTDEQKNYVDGKPD EEEEECCCCCHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHCCCCCCCC YADAFEDNMIFRWDSQIGRGVDSSYVSDVVNTKRKHLLVKKSDAESNFYYMGEFDIVDVR HHHHHCCCEEEEECHHHCCCCCHHHHHHHHHHHHHEEEEEECCCCCCEEEECCEEEEEHH AARKRDNNGKERDITKFEMKMHHPVREDLLRYLQSNLQQRLQNNTQELKAI HHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8412658 [H]