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The map label for this gene is int [H]

Identifier: 238922505

GI number: 238922505

Start: 78905

End: 80140

Strand: Direct

Name: int [H]

Synonym: EUBREC_0079

Alternate gene names: 238922505

Gene position: 78905-80140 (Clockwise)

Preceding gene: 238922504

Following gene: 238922506

Centisome position: 2.29

GC content: 37.38

Gene sequence:

>1236_bases
ATGGCTTGTAGAAAAGATGGTAAAGGCAGAGTATTAAGAAAGGGTGAGGGTTACAGAAAAGGCGACGGAAGATACTCATA
TGTATATATTGATCCATTAGGCAAGAAAAAGACCATTTATGCAAAGTCTTTGGTAAAACTTCGAGAAAGAGAAGAACAGT
TACAAAAAGATCAGTTGGATGGACTTGATGTCTATGTCGCAGGAAAGGCTGATGTGAACTTTTTGTTTGACAGGTACATA
TCAACTAAAACAGAATTGCGTAGCACTACTTACAGTAATTATTTGTATACATGGAATCATTTTATTCGTGATACATTTGG
CAAGAAGAAAGTAAGAGATGTGAAATACTCAGACGTGTTGTTCTTTTATACAGACTTGATTAATAATCAGGGATTACAGA
TTAATACGCTTGAGACAATTAACACAGTACTAAGACCTACATTTCAACTTGCTGTCAGAGATGATATCATAAGGAAGAAT
CCGGTAGACGGAGCATACTGTGAAGTAAAAAAGCGTAATGGTGGTGCCAGAAAAACAAGGCGAGCGTTGACTGTGGATCA
GCAGAGAAAATTCATGGAGTATGTAGCAAAGAATCCGTTCTTTTATCACTGGTATCCATTCTTTGTATTTTTGTTAGGAA
CTGGATGCAGAATAGGAGAAGCAATTGGGATACGCTGGGATGATATTGATTTGGAAAATCGAATCATTGATATCAATCAT
AGCTTGACCTATTACCAGAGAGCGGATGATTCATATAAATGTGAGTTTAGAGTATCTTTGCCAAAGACAGAAGCTGGTAA
TCGTAGAATACCTATGATGCAGCAGGTATATGATGTGCTTCAGGAAGAATATGAGAGACAGAAGCAGGAAGGCTTTTGCG
TTGAGAATGTGGATGGAATGACCAATTTTGTATTTACAAACCGATTTGGGATGCCACATAACCCAGCAGCAGTAAACCGG
GCAATCAAGAGAATTGTGGATACACATAATTCAGAAGAAGAGGTGGCTGCTAAAAAGGAGAAGAGAGAACCTGTTATGAT
TCCAAGATTCTCCTGCCATATCTTCAGACATACGTTTGCATCAAGATTTTGCGAGAATGAAACCAACATCAAAGTAATTC
AAGAGGTAATGGGACATGCTGATGTATCGACTACCATGAACATATATGCAGAAGCAAACCCAGATGTTACCAAATCAGTA
ATTGAGAAATTATCAAAAAATATGGATATTTTTTAG

Upstream 100 bases:

>100_bases
ATCTATCCATTTCGCAATTGATTAGAATGGGTGTTGAATTACAAATGAAGCAACAGGCTAATCAGTAGAACAGGCTCTTT
TCTCCAGAAAGGAGAGAATA

Downstream 100 bases:

>100_bases
AAAAGAGTCCTGCGATTGAACTCTTTGAAGATTGAAAATATACCTATTCATACTGGGATAAATATGCTATACTCATCTAG
TATTGAAGTGTTTGACACGG

Product: integrase/recombinase, XerC/CodV family

Products: NA

Alternate protein names: Integrase [H]

Number of amino acids: Translated: 411; Mature: 410

Protein sequence:

>411_residues
MACRKDGKGRVLRKGEGYRKGDGRYSYVYIDPLGKKKTIYAKSLVKLREREEQLQKDQLDGLDVYVAGKADVNFLFDRYI
STKTELRSTTYSNYLYTWNHFIRDTFGKKKVRDVKYSDVLFFYTDLINNQGLQINTLETINTVLRPTFQLAVRDDIIRKN
PVDGAYCEVKKRNGGARKTRRALTVDQQRKFMEYVAKNPFFYHWYPFFVFLLGTGCRIGEAIGIRWDDIDLENRIIDINH
SLTYYQRADDSYKCEFRVSLPKTEAGNRRIPMMQQVYDVLQEEYERQKQEGFCVENVDGMTNFVFTNRFGMPHNPAAVNR
AIKRIVDTHNSEEEVAAKKEKREPVMIPRFSCHIFRHTFASRFCENETNIKVIQEVMGHADVSTTMNIYAEANPDVTKSV
IEKLSKNMDIF

Sequences:

>Translated_411_residues
MACRKDGKGRVLRKGEGYRKGDGRYSYVYIDPLGKKKTIYAKSLVKLREREEQLQKDQLDGLDVYVAGKADVNFLFDRYI
STKTELRSTTYSNYLYTWNHFIRDTFGKKKVRDVKYSDVLFFYTDLINNQGLQINTLETINTVLRPTFQLAVRDDIIRKN
PVDGAYCEVKKRNGGARKTRRALTVDQQRKFMEYVAKNPFFYHWYPFFVFLLGTGCRIGEAIGIRWDDIDLENRIIDINH
SLTYYQRADDSYKCEFRVSLPKTEAGNRRIPMMQQVYDVLQEEYERQKQEGFCVENVDGMTNFVFTNRFGMPHNPAAVNR
AIKRIVDTHNSEEEVAAKKEKREPVMIPRFSCHIFRHTFASRFCENETNIKVIQEVMGHADVSTTMNIYAEANPDVTKSV
IEKLSKNMDIF
>Mature_410_residues
ACRKDGKGRVLRKGEGYRKGDGRYSYVYIDPLGKKKTIYAKSLVKLREREEQLQKDQLDGLDVYVAGKADVNFLFDRYIS
TKTELRSTTYSNYLYTWNHFIRDTFGKKKVRDVKYSDVLFFYTDLINNQGLQINTLETINTVLRPTFQLAVRDDIIRKNP
VDGAYCEVKKRNGGARKTRRALTVDQQRKFMEYVAKNPFFYHWYPFFVFLLGTGCRIGEAIGIRWDDIDLENRIIDINHS
LTYYQRADDSYKCEFRVSLPKTEAGNRRIPMMQQVYDVLQEEYERQKQEGFCVENVDGMTNFVFTNRFGMPHNPAAVNRA
IKRIVDTHNSEEEVAAKKEKREPVMIPRFSCHIFRHTFASRFCENETNIKVIQEVMGHADVSTTMNIYAEANPDVTKSVI
EKLSKNMDIF

Specific function: Integrase Is Necessary For Integration Of The Phage Into The Host Genome By Site-Specific Recombination. In Conjunction With Excisionase, Integrase Is Also Necessary For Excision Of The Prophage From The Host Genome (By Similarity). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016177
- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004191
- InterPro:   IPR013087 [H]

Pfam domain/function: PF02920 Integrase_DNA; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 48128; Mature: 47996

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MACRKDGKGRVLRKGEGYRKGDGRYSYVYIDPLGKKKTIYAKSLVKLREREEQLQKDQLD
CCCCCCCCCCEEECCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
GLDVYVAGKADVNFLFDRYISTKTELRSTTYSNYLYTWNHFIRDTFGKKKVRDVKYSDVL
CEEEEEECCCCHHHHHHHHHCCHHHHHHHHHCCEEHHHHHHHHHHHCCHHHCCCCHHHHH
FFYTDLINNQGLQINTLETINTVLRPTFQLAVRDDIIRKNPVDGAYCEVKKRNGGARKTR
HHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHH
RALTVDQQRKFMEYVAKNPFFYHWYPFFVFLLGTGCRIGEAIGIRWDDIDLENRIIDINH
HHHCHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCCCCEECCEECCCCCCCCEEEECC
SLTYYQRADDSYKCEFRVSLPKTEAGNRRIPMMQQVYDVLQEEYERQKQEGFCVENVDGM
CEEEEECCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEECCCCC
TNFVFTNRFGMPHNPAAVNRAIKRIVDTHNSEEEVAAKKEKREPVMIPRFSCHIFRHTFA
HHEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
SRFCENETNIKVIQEVMGHADVSTTMNIYAEANPDVTKSVIEKLSKNMDIF
HHHHCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ACRKDGKGRVLRKGEGYRKGDGRYSYVYIDPLGKKKTIYAKSLVKLREREEQLQKDQLD
CCCCCCCCCEEECCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
GLDVYVAGKADVNFLFDRYISTKTELRSTTYSNYLYTWNHFIRDTFGKKKVRDVKYSDVL
CEEEEEECCCCHHHHHHHHHCCHHHHHHHHHCCEEHHHHHHHHHHHCCHHHCCCCHHHHH
FFYTDLINNQGLQINTLETINTVLRPTFQLAVRDDIIRKNPVDGAYCEVKKRNGGARKTR
HHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHH
RALTVDQQRKFMEYVAKNPFFYHWYPFFVFLLGTGCRIGEAIGIRWDDIDLENRIIDINH
HHHCHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCCCCEECCEECCCCCCCCEEEECC
SLTYYQRADDSYKCEFRVSLPKTEAGNRRIPMMQQVYDVLQEEYERQKQEGFCVENVDGM
CEEEEECCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEECCCCC
TNFVFTNRFGMPHNPAAVNRAIKRIVDTHNSEEEVAAKKEKREPVMIPRFSCHIFRHTFA
HHEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
SRFCENETNIKVIQEVMGHADVSTTMNIYAEANPDVTKSVIEKLSKNMDIF
HHHHCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12200547 [H]