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The map label for this gene is yggR [C]

Identifier: 238922468

GI number: 238922468

Start: 48743

End: 49960

Strand: Direct

Name: yggR [C]

Synonym: EUBREC_0042

Alternate gene names: 238922468

Gene position: 48743-49960 (Clockwise)

Preceding gene: 238922467

Following gene: 238922469

Centisome position: 1.41

GC content: 45.65

Gene sequence:

>1218_bases
GTGCTGGATGATTTTGGACAGAGAATAAGAGATATTATACTTTCTGAAATGGATTTGTCCAGAGAGCTGAGTGATGAGGA
AATATGTGATTTAATCGGAAGCGTGGTTTCAAGAGAGGCACGCGACAGACCAATGACTATAAAGGATAGAGCGGAGCTTG
AGCGCACCATATTCAACTCTCTGCGTAAGCTTGATGTGCTGCAGGAGCTGGTGGATGACAGGGATGTGACTGAAATTATG
GTAAACGGTCCCAATGATATATTCTATGAAAAAGCCGGAAGAATCCAAAGGTTCAAGGGTCATTTTTCATCGGAAGAGAA
GCTGGAGGATGTGATACAGCAGATTGTGGGACGCCATAACAGGGTTGTAAATCAGGCATCACCGATAGTTGATACCAGGC
TTAGTGACGGCTCCAGGGTAAATATAGTGCTAAACCCCATATCTATAGGCGGCTCGGCCGTATCAATCAGAAAGTTTCCG
GAGCATCCTATGAGCATGGAGAGGCTTGTTGAGATAGAAGCTCTCTCGCCGGAGGTGGCAAGGCTTCTACAGATACTGAC
GCAGGCCAAATACAATATATTTATTTCCGGTGGTACAGGCTCCGGAAAAACGACCTTCCTGAATGCTCTGTCACAATATA
TTCCTGATGATGAGAGAATTATTACAATTGAAGACTCAGCGGAGCTGCAGCTTCTGGGAGCTAAAAATATAGTAAGGCTT
GAGACAAGAAATGCAAATACCGATGGGGTTACTCCAATTACAATAAGAGATCTTATCAGGACGGCTCTTCGTATGAGACC
GGACAGGATAATAGTGGGCGAGTGCAGAGGTGCAGAGGCGCTTGATATGCTTCAGGCTATGAATACAGGACATGACGGCT
CGTTGTCCACCGGCCATGCCAATTCACCACATGATATCATTTCAAGAATTGAGACTATGGTGCTTCAAGGTCAGGATTTC
CCACTCAATGCGATACGGCAGCAGATAGCATCCGGAATAGATATTATTGTCCAGCTTGGCAGGCTGAGGGATAAAAGCAG
GAGAGTCCTTGAGATATCAGAGGTGGATGGATTTATGGATGGTGAAATTGTGCTGCATACGCTGTATCGTTTTGAGGAAA
CCGCTGTTTTGGACAGTGGGAGGATACAGGGCTTTTTAAAGAAAGCAGGGACACTTTGTCACACCGACAAGCTTATGGCA
GCAGGGCTTAGTGTATAG

Upstream 100 bases:

>100_bases
GTCATCACGACACCGGTATCTACATGTGATAAGCTTGTGGAGCTGTGGAAGTGGAATGAGTTTGGAGATGTCATAAGAAA
CATGACTCGGGGTATTTCGT

Downstream 100 bases:

>100_bases
GCTGTTATGTGGCATTTAAAGTAAGAAAGGCTGTAGCTGTCAGTATAGGAATATATGTTACTGAACAGTTATGAAGGGTT
TGATTATATGGATTACAGCA

Product: Flp pilus assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 405

Protein sequence:

>405_residues
MLDDFGQRIRDIILSEMDLSRELSDEEICDLIGSVVSREARDRPMTIKDRAELERTIFNSLRKLDVLQELVDDRDVTEIM
VNGPNDIFYEKAGRIQRFKGHFSSEEKLEDVIQQIVGRHNRVVNQASPIVDTRLSDGSRVNIVLNPISIGGSAVSIRKFP
EHPMSMERLVEIEALSPEVARLLQILTQAKYNIFISGGTGSGKTTFLNALSQYIPDDERIITIEDSAELQLLGAKNIVRL
ETRNANTDGVTPITIRDLIRTALRMRPDRIIVGECRGAEALDMLQAMNTGHDGSLSTGHANSPHDIISRIETMVLQGQDF
PLNAIRQQIASGIDIIVQLGRLRDKSRRVLEISEVDGFMDGEIVLHTLYRFEETAVLDSGRIQGFLKKAGTLCHTDKLMA
AGLSV

Sequences:

>Translated_405_residues
MLDDFGQRIRDIILSEMDLSRELSDEEICDLIGSVVSREARDRPMTIKDRAELERTIFNSLRKLDVLQELVDDRDVTEIM
VNGPNDIFYEKAGRIQRFKGHFSSEEKLEDVIQQIVGRHNRVVNQASPIVDTRLSDGSRVNIVLNPISIGGSAVSIRKFP
EHPMSMERLVEIEALSPEVARLLQILTQAKYNIFISGGTGSGKTTFLNALSQYIPDDERIITIEDSAELQLLGAKNIVRL
ETRNANTDGVTPITIRDLIRTALRMRPDRIIVGECRGAEALDMLQAMNTGHDGSLSTGHANSPHDIISRIETMVLQGQDF
PLNAIRQQIASGIDIIVQLGRLRDKSRRVLEISEVDGFMDGEIVLHTLYRFEETAVLDSGRIQGFLKKAGTLCHTDKLMA
AGLSV
>Mature_405_residues
MLDDFGQRIRDIILSEMDLSRELSDEEICDLIGSVVSREARDRPMTIKDRAELERTIFNSLRKLDVLQELVDDRDVTEIM
VNGPNDIFYEKAGRIQRFKGHFSSEEKLEDVIQQIVGRHNRVVNQASPIVDTRLSDGSRVNIVLNPISIGGSAVSIRKFP
EHPMSMERLVEIEALSPEVARLLQILTQAKYNIFISGGTGSGKTTFLNALSQYIPDDERIITIEDSAELQLLGAKNIVRL
ETRNANTDGVTPITIRDLIRTALRMRPDRIIVGECRGAEALDMLQAMNTGHDGSLSTGHANSPHDIISRIETMVLQGQDF
PLNAIRQQIASGIDIIVQLGRLRDKSRRVLEISEVDGFMDGEIVLHTLYRFEETAVLDSGRIQGFLKKAGTLCHTDKLMA
AGLSV

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022399
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 45226; Mature: 45226

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: PS00227 TUBULIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDDFGQRIRDIILSEMDLSRELSDEEICDLIGSVVSREARDRPMTIKDRAELERTIFNS
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
LRKLDVLQELVDDRDVTEIMVNGPNDIFYEKAGRIQRFKGHFSSEEKLEDVIQQIVGRHN
HHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHCHHHHHHCCCCCHHHHHHHHHHHHHHHH
RVVNQASPIVDTRLSDGSRVNIVLNPISIGGSAVSIRKFPEHPMSMERLVEIEALSPEVA
HHHHHCCCCHHHCCCCCCEEEEEEECEECCCCEEEEECCCCCCCCHHHHHHHHHCCHHHH
RLLQILTQAKYNIFISGGTGSGKTTFLNALSQYIPDDERIITIEDSAELQLLGAKNIVRL
HHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCEEEECCCCEEEE
ETRNANTDGVTPITIRDLIRTALRMRPDRIIVGECRGAEALDMLQAMNTGHDGSLSTGHA
EECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCC
NSPHDIISRIETMVLQGQDFPLNAIRQQIASGIDIIVQLGRLRDKSRRVLEISEVDGFMD
CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHCCCCC
GEIVLHTLYRFEETAVLDSGRIQGFLKKAGTLCHTDKLMAAGLSV
CHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHCCCCC
>Mature Secondary Structure
MLDDFGQRIRDIILSEMDLSRELSDEEICDLIGSVVSREARDRPMTIKDRAELERTIFNS
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
LRKLDVLQELVDDRDVTEIMVNGPNDIFYEKAGRIQRFKGHFSSEEKLEDVIQQIVGRHN
HHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHCHHHHHHCCCCCHHHHHHHHHHHHHHHH
RVVNQASPIVDTRLSDGSRVNIVLNPISIGGSAVSIRKFPEHPMSMERLVEIEALSPEVA
HHHHHCCCCHHHCCCCCCEEEEEEECEECCCCEEEEECCCCCCCCHHHHHHHHHCCHHHH
RLLQILTQAKYNIFISGGTGSGKTTFLNALSQYIPDDERIITIEDSAELQLLGAKNIVRL
HHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCEEEECCCCEEEE
ETRNANTDGVTPITIRDLIRTALRMRPDRIIVGECRGAEALDMLQAMNTGHDGSLSTGHA
EECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCC
NSPHDIISRIETMVLQGQDFPLNAIRQQIASGIDIIVQLGRLRDKSRRVLEISEVDGFMD
CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHCCCCC
GEIVLHTLYRFEETAVLDSGRIQGFLKKAGTLCHTDKLMAAGLSV
CHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12218036; 9634230 [H]