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The map label for this gene is yocR [H]

Identifier: 238922174

GI number: 238922174

Start: 367399

End: 368799

Strand: Reverse

Name: yocR [H]

Synonym: EUBELI_20409

Alternate gene names: 238922174

Gene position: 368799-367399 (Counterclockwise)

Preceding gene: 238922175

Following gene: 238922173

Centisome position: 58.84

GC content: 36.19

Gene sequence:

>1401_bases
ATGAACGAAAATCGTAATTCATTCAAGGGCTCTATAGGGTTCGTCCTTGCAGCAGCGGGTAGTGCTGTAGGACTTGGTAA
CATATGGAGATTTCCTTATCTGGCAGCTAAAGATGGAGGCGGATTATTCCTCGTTATTTACATTGTTTTAGCATTAACAT
TTGGTTTTACTCTACTCACAACAGAAATTGCTATTGGACGAAAGACAAAGCAGAGTCCGCTTACAGCTTACAGCAAGTTA
AAGAGTAAGTGGAAGCCACTGGGTATTATTGCGTGTATTGTACCTATAATGATATTTCCATACTATGTAACAATCGGTGG
ATGGGTACTTAAGTATCTTCTTGTTTATATTACGGGTAATGGACATGCAGCAGCACAGGACGGATATTTCTCAGGATTTA
TCGGTCAGACAGCAGAACCAATCATAATGATGCTTGTGTTTACAATAATTGTTGCATTTATTATATTCCGTGGTGTTAAC
AGTGGTATTGAATCATCATCAAAGATTATCATGCCATTACTTATTGTGCTTGTTCTTGGTGTATCTGTATATTCACTTAC
AATTTCATATACAGACATTGATGGCACAACAAGAACAGGTTTACAGGGATTAGGTGCTTATGTAATTCCTAACATGAAAG
GAATTACTGTTAAGCAGTTCTGTACAGTTCTTATGGACGCAATGGGACAGCTTTTCTACAGTTTAAGTGTTGCTATGGGT
ATTATGATTGCATATGGTTCATATGTAAGTGATGATGCTAATCTTGGAAAGTCAATTAACCAGATTGAGCTATTTGATAC
AATAGTTGCATTTCTTGCAGGTGTAATGATTATTCCTGCTGTATTTGTATTCATGGGAAGAGATGGAATGACAGCATCAG
GTCCAAGTCTTATGTTTGTTTCGCTTCCTAAAGTATTTGATTCTATGGGATTTGCAGGAAATGTAATTGGTGCAATATTC
TTTGCAATGGTGTTCTTTGCAGCCCTTACAAGTGCAGTTTCAATTATGGAAGCTATTGTTTCAAGCTTTATGGATGAATT
TAAGTTAAACAGAAACAAGGCTACAGCAATAGAAACTGTAATTGGTATAGCTGTTGCAGTTATCGTATGCTTAGGATATA
ATAAACTGTTATTTGATATTAAGCTCCCTAACGGAGTACATGCACAGGTGCTTGATATTATGGATTATGTCAGCAATAAT
GTACTTATGCCAATAGTTTCTATAGGAACATGTATCCTTATTGGATGGATACTTAAGCCAAAGACTGTTATAGATGAAGT
TGAGAAAACAGGAATTAAGATGGGAAGAAAGGGCCTTTATACAGTTATGGTAAAGTGGGTTGCTCCAATTCTTTTATTCC
TTCTTCTTCTTAAATCACTTGGAATTCTTACTATAATCTGA

Upstream 100 bases:

>100_bases
ACTGTGTAAACACGGTGTCTCTTTTTTGCTAAACAGTTGACCGACTTGATATTATTAGGTATAATTTATAAGTATATATT
AAAAAAGGGAAGGTTATGAA

Downstream 100 bases:

>100_bases
TACAGGTAAGGTTTACAGATTACTAATGTTTCTGCAAGAGGTTAATAAATGATTAATAAAAAGTTTTGTATAACAATGTC
AGGTTTCGTGATTGCATCCT

Product: neurotransmitter:Na+ symporter, NSS family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 466; Mature: 466

Protein sequence:

>466_residues
MNENRNSFKGSIGFVLAAAGSAVGLGNIWRFPYLAAKDGGGLFLVIYIVLALTFGFTLLTTEIAIGRKTKQSPLTAYSKL
KSKWKPLGIIACIVPIMIFPYYVTIGGWVLKYLLVYITGNGHAAAQDGYFSGFIGQTAEPIIMMLVFTIIVAFIIFRGVN
SGIESSSKIIMPLLIVLVLGVSVYSLTISYTDIDGTTRTGLQGLGAYVIPNMKGITVKQFCTVLMDAMGQLFYSLSVAMG
IMIAYGSYVSDDANLGKSINQIELFDTIVAFLAGVMIIPAVFVFMGRDGMTASGPSLMFVSLPKVFDSMGFAGNVIGAIF
FAMVFFAALTSAVSIMEAIVSSFMDEFKLNRNKATAIETVIGIAVAVIVCLGYNKLLFDIKLPNGVHAQVLDIMDYVSNN
VLMPIVSIGTCILIGWILKPKTVIDEVEKTGIKMGRKGLYTVMVKWVAPILLFLLLLKSLGILTII

Sequences:

>Translated_466_residues
MNENRNSFKGSIGFVLAAAGSAVGLGNIWRFPYLAAKDGGGLFLVIYIVLALTFGFTLLTTEIAIGRKTKQSPLTAYSKL
KSKWKPLGIIACIVPIMIFPYYVTIGGWVLKYLLVYITGNGHAAAQDGYFSGFIGQTAEPIIMMLVFTIIVAFIIFRGVN
SGIESSSKIIMPLLIVLVLGVSVYSLTISYTDIDGTTRTGLQGLGAYVIPNMKGITVKQFCTVLMDAMGQLFYSLSVAMG
IMIAYGSYVSDDANLGKSINQIELFDTIVAFLAGVMIIPAVFVFMGRDGMTASGPSLMFVSLPKVFDSMGFAGNVIGAIF
FAMVFFAALTSAVSIMEAIVSSFMDEFKLNRNKATAIETVIGIAVAVIVCLGYNKLLFDIKLPNGVHAQVLDIMDYVSNN
VLMPIVSIGTCILIGWILKPKTVIDEVEKTGIKMGRKGLYTVMVKWVAPILLFLLLLKSLGILTII
>Mature_466_residues
MNENRNSFKGSIGFVLAAAGSAVGLGNIWRFPYLAAKDGGGLFLVIYIVLALTFGFTLLTTEIAIGRKTKQSPLTAYSKL
KSKWKPLGIIACIVPIMIFPYYVTIGGWVLKYLLVYITGNGHAAAQDGYFSGFIGQTAEPIIMMLVFTIIVAFIIFRGVN
SGIESSSKIIMPLLIVLVLGVSVYSLTISYTDIDGTTRTGLQGLGAYVIPNMKGITVKQFCTVLMDAMGQLFYSLSVAMG
IMIAYGSYVSDDANLGKSINQIELFDTIVAFLAGVMIIPAVFVFMGRDGMTASGPSLMFVSLPKVFDSMGFAGNVIGAIF
FAMVFFAALTSAVSIMEAIVSSFMDEFKLNRNKATAIETVIGIAVAVIVCLGYNKLLFDIKLPNGVHAQVLDIMDYVSNN
VLMPIVSIGTCILIGWILKPKTVIDEVEKTGIKMGRKGLYTVMVKWVAPILLFLLLLKSLGILTII

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI21361581, Length=476, Percent_Identity=25.4201680672269, Blast_Score=133, Evalue=4e-31,
Organism=Homo sapiens, GI171184408, Length=485, Percent_Identity=25.5670103092783, Blast_Score=125, Evalue=7e-29,
Organism=Homo sapiens, GI171184406, Length=485, Percent_Identity=25.5670103092783, Blast_Score=125, Evalue=7e-29,
Organism=Homo sapiens, GI171184404, Length=485, Percent_Identity=25.5670103092783, Blast_Score=125, Evalue=7e-29,
Organism=Homo sapiens, GI7657587, Length=471, Percent_Identity=24.6284501061571, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI188528618, Length=385, Percent_Identity=25.7142857142857, Blast_Score=115, Evalue=1e-25,
Organism=Homo sapiens, GI4507043, Length=399, Percent_Identity=25.5639097744361, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI289191351, Length=412, Percent_Identity=24.7572815533981, Blast_Score=106, Evalue=5e-23,
Organism=Homo sapiens, GI4557046, Length=412, Percent_Identity=24.7572815533981, Blast_Score=106, Evalue=5e-23,
Organism=Homo sapiens, GI289191377, Length=412, Percent_Identity=24.7572815533981, Blast_Score=105, Evalue=7e-23,
Organism=Homo sapiens, GI134304856, Length=418, Percent_Identity=26.555023923445, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI4507041, Length=411, Percent_Identity=23.1143552311436, Blast_Score=99, Evalue=1e-20,
Organism=Homo sapiens, GI92859670, Length=417, Percent_Identity=24.9400479616307, Blast_Score=98, Evalue=2e-20,
Organism=Homo sapiens, GI194018524, Length=315, Percent_Identity=28.5714285714286, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI5032097, Length=479, Percent_Identity=22.1294363256785, Blast_Score=90, Evalue=5e-18,
Organism=Homo sapiens, GI58219014, Length=285, Percent_Identity=26.3157894736842, Blast_Score=89, Evalue=8e-18,
Organism=Homo sapiens, GI51468073, Length=283, Percent_Identity=25.4416961130742, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI11181770, Length=316, Percent_Identity=25.9493670886076, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI33354281, Length=113, Percent_Identity=32.7433628318584, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI21361693, Length=113, Percent_Identity=32.7433628318584, Blast_Score=83, Evalue=5e-16,
Organism=Homo sapiens, GI218563756, Length=479, Percent_Identity=21.7118997912317, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI12408638, Length=283, Percent_Identity=24.3816254416961, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI197276623, Length=111, Percent_Identity=36.036036036036, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI54607094, Length=111, Percent_Identity=36.036036036036, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI197276625, Length=111, Percent_Identity=36.036036036036, Blast_Score=77, Evalue=5e-14,
Organism=Homo sapiens, GI67782317, Length=521, Percent_Identity=22.2648752399232, Blast_Score=76, Evalue=7e-14,
Organism=Homo sapiens, GI67782313, Length=521, Percent_Identity=22.2648752399232, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI67782315, Length=521, Percent_Identity=22.2648752399232, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI300360519, Length=303, Percent_Identity=25.0825082508251, Blast_Score=70, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17555248, Length=431, Percent_Identity=25.5220417633411, Blast_Score=115, Evalue=5e-26,
Organism=Caenorhabditis elegans, GI17554804, Length=369, Percent_Identity=25.4742547425474, Blast_Score=103, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI25146584, Length=426, Percent_Identity=23.2394366197183, Blast_Score=86, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI212642127, Length=113, Percent_Identity=35.3982300884956, Blast_Score=82, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17535731, Length=119, Percent_Identity=33.6134453781513, Blast_Score=75, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17542050, Length=116, Percent_Identity=33.6206896551724, Blast_Score=69, Evalue=6e-12,
Organism=Drosophila melanogaster, GI17136952, Length=515, Percent_Identity=23.495145631068, Blast_Score=114, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24639514, Length=515, Percent_Identity=25.2427184466019, Blast_Score=113, Evalue=3e-25,
Organism=Drosophila melanogaster, GI221329674, Length=515, Percent_Identity=25.2427184466019, Blast_Score=112, Evalue=5e-25,
Organism=Drosophila melanogaster, GI281364394, Length=515, Percent_Identity=23.495145631068, Blast_Score=110, Evalue=3e-24,
Organism=Drosophila melanogaster, GI28574704, Length=515, Percent_Identity=23.495145631068, Blast_Score=110, Evalue=3e-24,
Organism=Drosophila melanogaster, GI17136950, Length=515, Percent_Identity=23.495145631068, Blast_Score=110, Evalue=3e-24,
Organism=Drosophila melanogaster, GI28574702, Length=515, Percent_Identity=23.495145631068, Blast_Score=110, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24762620, Length=398, Percent_Identity=25.1256281407035, Blast_Score=108, Evalue=9e-24,
Organism=Drosophila melanogaster, GI24639516, Length=535, Percent_Identity=23.5514018691589, Blast_Score=105, Evalue=7e-23,
Organism=Drosophila melanogaster, GI24661428, Length=518, Percent_Identity=23.1660231660232, Blast_Score=104, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24655079, Length=312, Percent_Identity=29.4871794871795, Blast_Score=102, Evalue=5e-22,
Organism=Drosophila melanogaster, GI45550877, Length=422, Percent_Identity=25.1184834123223, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI45551183, Length=422, Percent_Identity=25.1184834123223, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI281364136, Length=535, Percent_Identity=23.3644859813084, Blast_Score=99, Evalue=7e-21,
Organism=Drosophila melanogaster, GI19921936, Length=510, Percent_Identity=22.9411764705882, Blast_Score=99, Evalue=9e-21,
Organism=Drosophila melanogaster, GI45551088, Length=508, Percent_Identity=23.0314960629921, Blast_Score=96, Evalue=7e-20,
Organism=Drosophila melanogaster, GI24652942, Length=508, Percent_Identity=23.0314960629921, Blast_Score=95, Evalue=9e-20,
Organism=Drosophila melanogaster, GI281363702, Length=469, Percent_Identity=22.1748400852878, Blast_Score=82, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24654186, Length=120, Percent_Identity=31.6666666666667, Blast_Score=79, Evalue=7e-15,
Organism=Drosophila melanogaster, GI24582567, Length=476, Percent_Identity=22.6890756302521, Blast_Score=78, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 50297; Mature: 50297

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNENRNSFKGSIGFVLAAAGSAVGLGNIWRFPYLAAKDGGGLFLVIYIVLALTFGFTLLT
CCCCCCCCCCHHHHHEEECCCCCCCCCHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHH
TEIAIGRKTKQSPLTAYSKLKSKWKPLGIIACIVPIMIFPYYVTIGGWVLKYLLVYITGN
HHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
GHAAAQDGYFSGFIGQTAEPIIMMLVFTIIVAFIIFRGVNSGIESSSKIIMPLLIVLVLG
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
VSVYSLTISYTDIDGTTRTGLQGLGAYVIPNMKGITVKQFCTVLMDAMGQLFYSLSVAMG
HHHHEEEEEEEECCCCHHHHHHHCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IMIAYGSYVSDDANLGKSINQIELFDTIVAFLAGVMIIPAVFVFMGRDGMTASGPSLMFV
HHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE
SLPKVFDSMGFAGNVIGAIFFAMVFFAALTSAVSIMEAIVSSFMDEFKLNRNKATAIETV
EHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
IGIAVAVIVCLGYNKLLFDIKLPNGVHAQVLDIMDYVSNNVLMPIVSIGTCILIGWILKP
HHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
KTVIDEVEKTGIKMGRKGLYTVMVKWVAPILLFLLLLKSLGILTII
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEECC
>Mature Secondary Structure
MNENRNSFKGSIGFVLAAAGSAVGLGNIWRFPYLAAKDGGGLFLVIYIVLALTFGFTLLT
CCCCCCCCCCHHHHHEEECCCCCCCCCHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHH
TEIAIGRKTKQSPLTAYSKLKSKWKPLGIIACIVPIMIFPYYVTIGGWVLKYLLVYITGN
HHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
GHAAAQDGYFSGFIGQTAEPIIMMLVFTIIVAFIIFRGVNSGIESSSKIIMPLLIVLVLG
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
VSVYSLTISYTDIDGTTRTGLQGLGAYVIPNMKGITVKQFCTVLMDAMGQLFYSLSVAMG
HHHHEEEEEEEECCCCHHHHHHHCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IMIAYGSYVSDDANLGKSINQIELFDTIVAFLAGVMIIPAVFVFMGRDGMTASGPSLMFV
HHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE
SLPKVFDSMGFAGNVIGAIFFAMVFFAALTSAVSIMEAIVSSFMDEFKLNRNKATAIETV
EHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
IGIAVAVIVCLGYNKLLFDIKLPNGVHAQVLDIMDYVSNNVLMPIVSIGTCILIGWILKP
HHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
KTVIDEVEKTGIKMGRKGLYTVMVKWVAPILLFLLLLKSLGILTII
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]