Click here to switch to the map view.

The map label for this gene is yoaD [C]

Identifier: 238922160

GI number: 238922160

Start: 353572

End: 354279

Strand: Reverse

Name: yoaD [C]

Synonym: EUBELI_20395

Alternate gene names: 238922160

Gene position: 354279-353572 (Counterclockwise)

Preceding gene: 238922161

Following gene: 238922159

Centisome position: 56.53

GC content: 34.89

Gene sequence:

>708_bases
ATGGTAGACTACAGCATTTTTCCGCTAGATGAAGAGATTAAAGACAAGCTTGCAAAGCTGGAAATAAGTTATGCATTTCA
ACCTATATTTTATCCGAATGGCAAGGATATATATGCATATGAGGCTTTAATGAGACCTAAGAATATTTTGGTTATGGATT
TAATTGAAGAGTTCAGGGCAAAGAATGATTTGCATACACTTGAGGTTGCAACCATATTTGGGGCGGTACAGTGTTATGCA
AAGCGAGGATATCATTCATATATAGCAATTAATTCATTTCCTGCGGAATCATTCACTGCAGAGGAACAGGCTGTTTTTGA
TGAATTTTATTCCGATGTTCTTGGTGATAAAGGTATAATTGAAATTCTTGAATATACAGCTCTTGACATTGATAAATGGC
AGTCCAAGAAAAATAATATTAACAGAAGCCGTTTTAATATTGCACTTGATGATTTTGGAACAGGAAATAATAATATGATG
GCAGTGGATATATTTGCACCGCATATCGTTAAGCTTGACAGAAGCCTTATAACAGATATTGAGAATGATGTTGATAAGCA
GGAGTATTATTTTTATTATAGAGACAGCTTCCATAAGAGAGGCATTAAGGTGCTTGCTGAAGGCATTGAATCTAGGGAAG
AGTATGAATTCTTAAGGGATAATGGTATTGATTTAGTGCAGGGATTTTATCTTGGACGACCAGAATAA

Upstream 100 bases:

>100_bases
GATTGATTGTGAATGAATATAACAGTTGCAAAGAATGTAATAAAGCGGTAAAATCTGTTTATGTGATTTGTAAATAATGT
GAGAGGGTATTGACAAAAGT

Downstream 100 bases:

>100_bases
GAAGAATGGTATTTTATACTTTTTTTAGAAATGCTTTATATAATATATATTAACATATTACAAAGTATGTTGTATTATGA
TGGAGTAAAGAAAACATTTT

Product: histidine ammonia-lyase

Products: NA

Alternate protein names: Diguanylate Cyclase/Phosphodiesterase; EAL Domain-Containing Protein; EAL Domain Protein; Signaling Protein; Signal Transduction Protein; EAL/GGDEF Domain-Containing Protein; Sensory Box Protein; Diguanylate Cyclase; Cyclic Diguanylate Phosphodiesterase Domain Protein; Diguanylate Cyclase/Phosphodiesterase With GAF Sensor; Cyclic-Di-GMP Regulatory Protein; Eal Domain Protein; Histidine Ammonia-Lyase; GGDEF Domain-Containing Protein; EAL/GGDEF/PAS Domain-Containing Protein; GGDEF Domain/EAL Domain-Containing Protein; Sensor Protein; Sensory Box/GGDEF Domain/EAL Domain Protein; EAL Domain Proteni; GGDEF Domain-Containing PAS Signal Transduction Protein; Signal Protein; FOG EAL Domain Protein; FOG EAL Domain-Containing Protein; Heme-Regulated Cyclic AMP Phosphodiesterase; EAL Domain/GGDEF Domain-Containing Protein; Diguanylate Cyclase Domain Protein; Cyclic Diguanylate Phosphodiesterase Domain; Cyclic Diguanylate Phosphodiesterase; EAL Domain/GGDEF Domain Protein; Diguanylate Phosphodiesterase Protein; GGDEF/EAL/PAS-Domain-Containing Protein; RNAse II Stability Modulator; GGDEFCBS:EAL Domain-Containing Protein; EAL Domain; Sensory Box/GGDEF Family Protein

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MVDYSIFPLDEEIKDKLAKLEISYAFQPIFYPNGKDIYAYEALMRPKNILVMDLIEEFRAKNDLHTLEVATIFGAVQCYA
KRGYHSYIAINSFPAESFTAEEQAVFDEFYSDVLGDKGIIEILEYTALDIDKWQSKKNNINRSRFNIALDDFGTGNNNMM
AVDIFAPHIVKLDRSLITDIENDVDKQEYYFYYRDSFHKRGIKVLAEGIESREEYEFLRDNGIDLVQGFYLGRPE

Sequences:

>Translated_235_residues
MVDYSIFPLDEEIKDKLAKLEISYAFQPIFYPNGKDIYAYEALMRPKNILVMDLIEEFRAKNDLHTLEVATIFGAVQCYA
KRGYHSYIAINSFPAESFTAEEQAVFDEFYSDVLGDKGIIEILEYTALDIDKWQSKKNNINRSRFNIALDDFGTGNNNMM
AVDIFAPHIVKLDRSLITDIENDVDKQEYYFYYRDSFHKRGIKVLAEGIESREEYEFLRDNGIDLVQGFYLGRPE
>Mature_235_residues
MVDYSIFPLDEEIKDKLAKLEISYAFQPIFYPNGKDIYAYEALMRPKNILVMDLIEEFRAKNDLHTLEVATIFGAVQCYA
KRGYHSYIAINSFPAESFTAEEQAVFDEFYSDVLGDKGIIEILEYTALDIDKWQSKKNNINRSRFNIALDDFGTGNNNMM
AVDIFAPHIVKLDRSLITDIENDVDKQEYYFYYRDSFHKRGIKVLAEGIESREEYEFLRDNGIDLVQGFYLGRPE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081980, Length=117, Percent_Identity=29.9145299145299, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1790496, Length=113, Percent_Identity=26.5486725663717, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI87081845, Length=117, Percent_Identity=29.9145299145299, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27366; Mature: 27366

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDYSIFPLDEEIKDKLAKLEISYAFQPIFYPNGKDIYAYEALMRPKNILVMDLIEEFRA
CCCCEECCCCHHHHHHHHHEEHEEEEEEEECCCCCEEEHHHHHHCCCCHHHHHHHHHHHC
KNDLHTLEVATIFGAVQCYAKRGYHSYIAINSFPAESFTAEEQAVFDEFYSDVLGDKGII
CCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHH
EILEYTALDIDKWQSKKNNINRSRFNIALDDFGTGNNNMMAVDIFAPHIVKLDRSLITDI
HHHHHHHCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHH
ENDVDKQEYYFYYRDSFHKRGIKVLAEGIESREEYEFLRDNGIDLVQGFYLGRPE
HHCCCCHHEEEEEHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEECCCCC
>Mature Secondary Structure
MVDYSIFPLDEEIKDKLAKLEISYAFQPIFYPNGKDIYAYEALMRPKNILVMDLIEEFRA
CCCCEECCCCHHHHHHHHHEEHEEEEEEEECCCCCEEEHHHHHHCCCCHHHHHHHHHHHC
KNDLHTLEVATIFGAVQCYAKRGYHSYIAINSFPAESFTAEEQAVFDEFYSDVLGDKGII
CCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHH
EILEYTALDIDKWQSKKNNINRSRFNIALDDFGTGNNNMMAVDIFAPHIVKLDRSLITDI
HHHHHHHCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHH
ENDVDKQEYYFYYRDSFHKRGIKVLAEGIESREEYEFLRDNGIDLVQGFYLGRPE
HHCCCCHHEEEEEHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA