Click here to switch to the map view.

The map label for this gene is yfmM [H]

Identifier: 238922061

GI number: 238922061

Start: 243228

End: 244781

Strand: Reverse

Name: yfmM [H]

Synonym: EUBELI_20296

Alternate gene names: 238922061

Gene position: 244781-243228 (Counterclockwise)

Preceding gene: 238922062

Following gene: 238922059

Centisome position: 39.06

GC content: 43.63

Gene sequence:

>1554_bases
ATGAGTTTACTTACAGTAACCGGACTTACACACGGATTTGGCGACAGAGCGATATTTAATAATGTGTCTTTCCAGCTTAA
CAGGCTTGATAAGATTGGATTAGTGGGAGCCAACGGCGAAGGTAAATCCACATTTATGAATATAATAACAGGCAAGCTTA
TGCCTGATGAGGGAAAGGTTGAGTGGGCTAAGAATGTCAGAGTCGGATATCTCGACCAGCATGCTGTGCTTGAGAAGGGC
ATGACAATCCAGTCGGTGCTTGCGTCTGCATTTGATTTTCTGTATGACATGGAGAATCAGATGAATGAGATATATGCCGG
GCTTGGCGACGCATCACCGGAAGAGATGGATAAGCTGATGGCGGAAGCGGGAACTATTCAGGACCTTCTTACAATGCATG
ATTTCTATATGATTGATGCGAAGGTTGAGGAAGTTGCAAGAGCATTGGGACTATCTGAACTTGGACTTGATAAGGATGTA
ACTGAGCTTTCAGGTGGACAGAGAACTAAGGTTCTGCTTGGCAAGCTGCTCCTTGAAAAGCCGGACATCCTTCTTCTTGA
TGAGCCGACTAATTATCTTGATAAGGAGCATATTGAGTGGCTTAAGAGATATCTGCAGGACTATGAGAACGCATTTATAC
TGATATCGCATGATATCCCATTCCTTAACAGTGTTATAAATGTTATTTATCATATGGATAATCAGGAACTGAATCGTTAT
ACGGGTGATTATGATAATTTCCAGAAGGTGTATGCTGTGAAGAAGGCGCAGCTTGAGGCAGCTTACAATAAGCAGCAGCA
GGAGATTGCGGAGCTTAAGGATTTCGTTGCAAGAAATAAAGCACGAGTTGCCACAAGAAATATGGCGATGTCGAGACAGA
AGAAGCTTGATAATATGGATATTATAGAGCTGGCGGCAGAGAAGCCAAAGCCAGAGTTTAATTTCAAGACTGCGAGAACA
CCGGGAAGATATATTTTCCAGACACACGACCTTGTTATCGGTTATGATGAGCCGCTTTCAAGTCCGCTTAACTTAGAGAT
GGAGCGAGGCCAGAAGATTGTGCTTACAGGTGCTAACGGTATCGGTAAATCTACATTGCTAAAGAGCATATTAGGACTTA
TTAAGCCTCTGTCAGGTGATGTTGAGCAGGGCGATTATCTTGAGATAGGATATTTCGAACAGGAGACTCCGGCTGGAATT
GAAACTACATGTCTTGAGGAGATATGGCAGGAGTTTCCAGGATATACACAGTATGAGGTTCGTTCAGCCCTTGCCAAATG
TGGTCTTACAACCAAGCATATCGAAAGCAAGGTTAAGGTTCTTTCTGGTGGAGAACAGGCAAAGGTGCGTCTGTGCAAGC
TGATTAACCGGGAGAGTAACATTCTTGTACTTGATGAGCCTACTAACCACCTTGATGTGGATGCCAAGGATGAATTAAAA
AGAGCCCTTATGGCATATAAGGGCAGTATACTTATGGTCTGCCACGAACCAGAGTTCTACGATGGTCTTGCGACTGATGT
GTGGGACTGTGGAAAGTGGACAACACGTATTTAA

Upstream 100 bases:

>100_bases
AGATATATATGATGCTTGTTCAAAGTAATCCCCCTTTACAACATTGCCATATCTCCCGTATAATAACCTAATAACTACAT
TAAAGAAAAGGAAACACCCC

Downstream 100 bases:

>100_bases
TCATTAAAGTACTCAGGGAACATTTTCCTGATTGCATCAATATTTTCAGAATATCTGCTCATATGTCTCTGCGATATATG
GGCAGCTTTTTCTTTATCTT

Product: ATP-binding cassette, sub-family F, member 3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 517; Mature: 516

Protein sequence:

>517_residues
MSLLTVTGLTHGFGDRAIFNNVSFQLNRLDKIGLVGANGEGKSTFMNIITGKLMPDEGKVEWAKNVRVGYLDQHAVLEKG
MTIQSVLASAFDFLYDMENQMNEIYAGLGDASPEEMDKLMAEAGTIQDLLTMHDFYMIDAKVEEVARALGLSELGLDKDV
TELSGGQRTKVLLGKLLLEKPDILLLDEPTNYLDKEHIEWLKRYLQDYENAFILISHDIPFLNSVINVIYHMDNQELNRY
TGDYDNFQKVYAVKKAQLEAAYNKQQQEIAELKDFVARNKARVATRNMAMSRQKKLDNMDIIELAAEKPKPEFNFKTART
PGRYIFQTHDLVIGYDEPLSSPLNLEMERGQKIVLTGANGIGKSTLLKSILGLIKPLSGDVEQGDYLEIGYFEQETPAGI
ETTCLEEIWQEFPGYTQYEVRSALAKCGLTTKHIESKVKVLSGGEQAKVRLCKLINRESNILVLDEPTNHLDVDAKDELK
RALMAYKGSILMVCHEPEFYDGLATDVWDCGKWTTRI

Sequences:

>Translated_517_residues
MSLLTVTGLTHGFGDRAIFNNVSFQLNRLDKIGLVGANGEGKSTFMNIITGKLMPDEGKVEWAKNVRVGYLDQHAVLEKG
MTIQSVLASAFDFLYDMENQMNEIYAGLGDASPEEMDKLMAEAGTIQDLLTMHDFYMIDAKVEEVARALGLSELGLDKDV
TELSGGQRTKVLLGKLLLEKPDILLLDEPTNYLDKEHIEWLKRYLQDYENAFILISHDIPFLNSVINVIYHMDNQELNRY
TGDYDNFQKVYAVKKAQLEAAYNKQQQEIAELKDFVARNKARVATRNMAMSRQKKLDNMDIIELAAEKPKPEFNFKTART
PGRYIFQTHDLVIGYDEPLSSPLNLEMERGQKIVLTGANGIGKSTLLKSILGLIKPLSGDVEQGDYLEIGYFEQETPAGI
ETTCLEEIWQEFPGYTQYEVRSALAKCGLTTKHIESKVKVLSGGEQAKVRLCKLINRESNILVLDEPTNHLDVDAKDELK
RALMAYKGSILMVCHEPEFYDGLATDVWDCGKWTTRI
>Mature_516_residues
SLLTVTGLTHGFGDRAIFNNVSFQLNRLDKIGLVGANGEGKSTFMNIITGKLMPDEGKVEWAKNVRVGYLDQHAVLEKGM
TIQSVLASAFDFLYDMENQMNEIYAGLGDASPEEMDKLMAEAGTIQDLLTMHDFYMIDAKVEEVARALGLSELGLDKDVT
ELSGGQRTKVLLGKLLLEKPDILLLDEPTNYLDKEHIEWLKRYLQDYENAFILISHDIPFLNSVINVIYHMDNQELNRYT
GDYDNFQKVYAVKKAQLEAAYNKQQQEIAELKDFVARNKARVATRNMAMSRQKKLDNMDIIELAAEKPKPEFNFKTARTP
GRYIFQTHDLVIGYDEPLSSPLNLEMERGQKIVLTGANGIGKSTLLKSILGLIKPLSGDVEQGDYLEIGYFEQETPAGIE
TTCLEEIWQEFPGYTQYEVRSALAKCGLTTKHIESKVKVLSGGEQAKVRLCKLINRESNILVLDEPTNHLDVDAKDELKR
ALMAYKGSILMVCHEPEFYDGLATDVWDCGKWTTRI

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=516, Percent_Identity=28.6821705426357, Blast_Score=209, Evalue=4e-54,
Organism=Homo sapiens, GI10947137, Length=521, Percent_Identity=27.447216890595, Blast_Score=187, Evalue=2e-47,
Organism=Homo sapiens, GI27881506, Length=521, Percent_Identity=27.447216890595, Blast_Score=186, Evalue=4e-47,
Organism=Homo sapiens, GI10947135, Length=516, Percent_Identity=29.0697674418605, Blast_Score=183, Evalue=4e-46,
Organism=Homo sapiens, GI69354671, Length=516, Percent_Identity=29.0697674418605, Blast_Score=183, Evalue=4e-46,
Organism=Homo sapiens, GI90421313, Length=170, Percent_Identity=27.6470588235294, Blast_Score=67, Evalue=3e-11,
Organism=Escherichia coli, GI1787041, Length=514, Percent_Identity=34.4357976653696, Blast_Score=281, Evalue=7e-77,
Organism=Escherichia coli, GI1789751, Length=509, Percent_Identity=28.8801571709234, Blast_Score=255, Evalue=5e-69,
Organism=Escherichia coli, GI2367384, Length=503, Percent_Identity=29.6222664015905, Blast_Score=231, Evalue=1e-61,
Organism=Escherichia coli, GI1787182, Length=530, Percent_Identity=31.1320754716981, Blast_Score=221, Evalue=9e-59,
Organism=Escherichia coli, GI1788165, Length=167, Percent_Identity=32.9341317365269, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1788506, Length=211, Percent_Identity=28.436018957346, Blast_Score=68, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17555318, Length=522, Percent_Identity=30.0766283524904, Blast_Score=216, Evalue=2e-56,
Organism=Caenorhabditis elegans, GI17559834, Length=513, Percent_Identity=29.2397660818713, Blast_Score=205, Evalue=4e-53,
Organism=Caenorhabditis elegans, GI17553372, Length=515, Percent_Identity=28.5436893203883, Blast_Score=201, Evalue=5e-52,
Organism=Caenorhabditis elegans, GI17510237, Length=222, Percent_Identity=26.5765765765766, Blast_Score=69, Evalue=7e-12,
Organism=Saccharomyces cerevisiae, GI6321121, Length=528, Percent_Identity=30.6818181818182, Blast_Score=231, Evalue=2e-61,
Organism=Saccharomyces cerevisiae, GI6320874, Length=520, Percent_Identity=29.6153846153846, Blast_Score=203, Evalue=6e-53,
Organism=Saccharomyces cerevisiae, GI6325030, Length=400, Percent_Identity=26.5, Blast_Score=112, Evalue=2e-25,
Organism=Saccharomyces cerevisiae, GI6323278, Length=394, Percent_Identity=25.1269035532995, Blast_Score=110, Evalue=7e-25,
Organism=Saccharomyces cerevisiae, GI6324314, Length=397, Percent_Identity=25.1889168765743, Blast_Score=108, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24666836, Length=535, Percent_Identity=29.5327102803738, Blast_Score=237, Evalue=1e-62,
Organism=Drosophila melanogaster, GI24641342, Length=500, Percent_Identity=29.6, Blast_Score=206, Evalue=4e-53,
Organism=Drosophila melanogaster, GI24642252, Length=535, Percent_Identity=26.7289719626168, Blast_Score=189, Evalue=5e-48,
Organism=Drosophila melanogaster, GI18859989, Length=535, Percent_Identity=26.7289719626168, Blast_Score=189, Evalue=5e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 58336; Mature: 58204

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLLTVTGLTHGFGDRAIFNNVSFQLNRLDKIGLVGANGEGKSTFMNIITGKLMPDEGKV
CCEEEEECCCCCCCCHHHHCCCCCEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCE
EWAKNVRVGYLDQHAVLEKGMTIQSVLASAFDFLYDMENQMNEIYAGLGDASPEEMDKLM
EHHCCCEEEECCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
AEAGTIQDLLTMHDFYMIDAKVEEVARALGLSELGLDKDVTELSGGQRTKVLLGKLLLEK
HHHCHHHHHHHHHHHHEEHHHHHHHHHHHCHHHCCCCCCHHHHCCCCHHHHHHHHHHHCC
PDILLLDEPTNYLDKEHIEWLKRYLQDYENAFILISHDIPFLNSVINVIYHMDNQELNRY
CCEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCCHHHHHH
TGDYDNFQKVYAVKKAQLEAAYNKQQQEIAELKDFVARNKARVATRNMAMSRQKKLDNMD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCH
IIELAAEKPKPEFNFKTARTPGRYIFQTHDLVIGYDEPLSSPLNLEMERGQKIVLTGANG
HHHHHHCCCCCCCCCEECCCCCCEEEEECCEEEECCCCCCCCCCEECCCCCEEEEECCCC
IGKSTLLKSILGLIKPLSGDVEQGDYLEIGYFEQETPAGIETTCLEEIWQEFPGYTQYEV
CCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCHHHH
RSALAKCGLTTKHIESKVKVLSGGEQAKVRLCKLINRESNILVLDEPTNHLDVDAKDELK
HHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHH
RALMAYKGSILMVCHEPEFYDGLATDVWDCGKWTTRI
HHHHHHCCCEEEEECCCCHHCCHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SLLTVTGLTHGFGDRAIFNNVSFQLNRLDKIGLVGANGEGKSTFMNIITGKLMPDEGKV
CEEEEECCCCCCCCHHHHCCCCCEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCE
EWAKNVRVGYLDQHAVLEKGMTIQSVLASAFDFLYDMENQMNEIYAGLGDASPEEMDKLM
EHHCCCEEEECCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
AEAGTIQDLLTMHDFYMIDAKVEEVARALGLSELGLDKDVTELSGGQRTKVLLGKLLLEK
HHHCHHHHHHHHHHHHEEHHHHHHHHHHHCHHHCCCCCCHHHHCCCCHHHHHHHHHHHCC
PDILLLDEPTNYLDKEHIEWLKRYLQDYENAFILISHDIPFLNSVINVIYHMDNQELNRY
CCEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCCHHHHHH
TGDYDNFQKVYAVKKAQLEAAYNKQQQEIAELKDFVARNKARVATRNMAMSRQKKLDNMD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCH
IIELAAEKPKPEFNFKTARTPGRYIFQTHDLVIGYDEPLSSPLNLEMERGQKIVLTGANG
HHHHHHCCCCCCCCCEECCCCCCEEEEECCEEEECCCCCCCCCCEECCCCCEEEEECCCC
IGKSTLLKSILGLIKPLSGDVEQGDYLEIGYFEQETPAGIETTCLEEIWQEFPGYTQYEV
CCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCHHHH
RSALAKCGLTTKHIESKVKVLSGGEQAKVRLCKLINRESNILVLDEPTNHLDVDAKDELK
HHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHH
RALMAYKGSILMVCHEPEFYDGLATDVWDCGKWTTRI
HHHHHHCCCEEEEECCCCHHCCHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9272861; 9384377 [H]