Click here to switch to the map view.

The map label for this gene is 238921915

Identifier: 238921915

GI number: 238921915

Start: 120080

End: 120640

Strand: Reverse

Name: 238921915

Synonym: EUBELI_20149

Alternate gene names: NA

Gene position: 120640-120080 (Counterclockwise)

Preceding gene: 238921916

Following gene: 238921914

Centisome position: 19.25

GC content: 36.01

Gene sequence:

>561_bases
ATGGATGATAAGCAGATATTAGATTTATATTGGGAGCGCTCCGAAGCTGCTATATCCGAAACTTCAAAAAAATACGGAAA
GTATTGCAGATATATAGCCTCTAATATTCTTCACAATGACGAAGATAGCGAGGAATGTGTAAATGATACTTATTTAAGAG
CTTGGAACAGCATACCGCCTAACCGTCCATCTGTCCTAAAAACTTTTTTAGGGAAGATTACTCGCAACTTATCTTTGGAC
AGGTACGAACTGCTCAATGCAAAGAAACGTAATGGCGGGCAAATGTCATTGATTTTTGATGAAATACAAGAGTGCATACC
ATCGTTGGATAGTACAGAAAACATTGTTGAAGAAATTGCTCTAACGGATATTCTCAACCGCTTTCTTTCTTCCCTGTCAT
TAGAACAGCGAAAAATCTTTATGAGAAGATATTGGTATTTATCGCCCATTAAAGAAATTGCAACGGAATATGGTATGAGT
GAGAGCAAAATCAAGATGTCATTATTTCGTTCAAGGAACGAACTTAAAAAATTATTAGAGAAAGAAGGTATCTCTGTATG
A

Upstream 100 bases:

>100_bases
ATCTTTGAATAAATATTTTTTGAATTTAAGTGACGCTTGACACATTTTTCTCGTCTATTAGGGTGAAAGACCTTAATACA
AGGGGAAGGAGGAGAAGCTT

Downstream 100 bases:

>100_bases
AAGAAAAGAAACTTTTAAGGGCATTGGGAAATGTCGATAATCAGTATATTAAGGAGGCTGAACCTATGAAAAAAACAAGT
AAAATTACTAATCGGCAAAA

Product: RNA polymerase sigma-70 factor, ECF subfamily

Products: NA

Alternate protein names: RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Subunit

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MDDKQILDLYWERSEAAISETSKKYGKYCRYIASNILHNDEDSEECVNDTYLRAWNSIPPNRPSVLKTFLGKITRNLSLD
RYELLNAKKRNGGQMSLIFDEIQECIPSLDSTENIVEEIALTDILNRFLSSLSLEQRKIFMRRYWYLSPIKEIATEYGMS
ESKIKMSLFRSRNELKKLLEKEGISV

Sequences:

>Translated_186_residues
MDDKQILDLYWERSEAAISETSKKYGKYCRYIASNILHNDEDSEECVNDTYLRAWNSIPPNRPSVLKTFLGKITRNLSLD
RYELLNAKKRNGGQMSLIFDEIQECIPSLDSTENIVEEIALTDILNRFLSSLSLEQRKIFMRRYWYLSPIKEIATEYGMS
ESKIKMSLFRSRNELKKLLEKEGISV
>Mature_186_residues
MDDKQILDLYWERSEAAISETSKKYGKYCRYIASNILHNDEDSEECVNDTYLRAWNSIPPNRPSVLKTFLGKITRNLSLD
RYELLNAKKRNGGQMSLIFDEIQECIPSLDSTENIVEEIALTDILNRFLSSLSLEQRKIFMRRYWYLSPIKEIATEYGMS
ESKIKMSLFRSRNELKKLLEKEGISV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21793; Mature: 21793

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDKQILDLYWERSEAAISETSKKYGKYCRYIASNILHNDEDSEECVNDTYLRAWNSIPP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC
NRPSVLKTFLGKITRNLSLDRYELLNAKKRNGGQMSLIFDEIQECIPSLDSTENIVEEIA
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH
LTDILNRFLSSLSLEQRKIFMRRYWYLSPIKEIATEYGMSESKIKMSLFRSRNELKKLLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
KEGISV
HCCCCC
>Mature Secondary Structure
MDDKQILDLYWERSEAAISETSKKYGKYCRYIASNILHNDEDSEECVNDTYLRAWNSIPP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC
NRPSVLKTFLGKITRNLSLDRYELLNAKKRNGGQMSLIFDEIQECIPSLDSTENIVEEIA
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH
LTDILNRFLSSLSLEQRKIFMRRYWYLSPIKEIATEYGMSESKIKMSLFRSRNELKKLLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
KEGISV
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA