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The map label for this gene is ymdB [C]

Identifier: 238921906

GI number: 238921906

Start: 116029

End: 116547

Strand: Reverse

Name: ymdB [C]

Synonym: EUBELI_20140

Alternate gene names: 238921906

Gene position: 116547-116029 (Counterclockwise)

Preceding gene: 238921907

Following gene: 238921905

Centisome position: 18.6

GC content: 40.08

Gene sequence:

>519_bases
ATGTATTTGATTAAGACAGTAAAAGGAGATATAACAAAAGTAACAGATGTGCAGGCAATTGTTAATGCAGCAAATAACTC
TCTTCTTGGCGGAGGCGGTGTAGATGGTGCGATTCATAGAGCCGCAGGACCGGAACTTCTGGCTGAGTGTAGGACACTTC
ACGGATGCGTGACTGGAGAAGCAAAGATAACAAAAGCCTATAATTTACCATGCGATTATGTTATTCATACTGTAGGACCG
ATATGGAATGGAGGCAGAGATAGAGAAGAGGAGCTTCTTGCTAACTGCTATTTTAATTCTATGAAGCTGGCAATGGATAA
TGGAATCAGGTCTATTGCATTTCCTTCAATATCAACGGGAATATATAGTTTTCCTGTTGAGTTGGCGGCAAAGATTGCGG
TACATACAGTAAACCGGTTCTTGCAGGATAATCCAGATTGTTTTGATCTGGTGGAATGGGTGCTATTTGATACTCATACT
GAATCAGTGTATGAAGATGAGGTTGATAAGATATATTAA

Upstream 100 bases:

>100_bases
TTATCGGAATTCCTTTCGGAAAGCAGTTTTTCAAAATTGCTAAATTGTCTCTGATGCCATTTGGGGCAGAGGTAATATAA
TAAACAGGCAGGTAAGAAAG

Downstream 100 bases:

>100_bases
AAGATTAATCGGTTTAGGATTGGTTTAATAGGGTCAAATATAAAACTTCATGGACGAAGGAGGAAACAGAGATTGCGCTG
TCTGACCTGGTAGTAAATGA

Product: RNA-directed RNA polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MYLIKTVKGDITKVTDVQAIVNAANNSLLGGGGVDGAIHRAAGPELLAECRTLHGCVTGEAKITKAYNLPCDYVIHTVGP
IWNGGRDREEELLANCYFNSMKLAMDNGIRSIAFPSISTGIYSFPVELAAKIAVHTVNRFLQDNPDCFDLVEWVLFDTHT
ESVYEDEVDKIY

Sequences:

>Translated_172_residues
MYLIKTVKGDITKVTDVQAIVNAANNSLLGGGGVDGAIHRAAGPELLAECRTLHGCVTGEAKITKAYNLPCDYVIHTVGP
IWNGGRDREEELLANCYFNSMKLAMDNGIRSIAFPSISTGIYSFPVELAAKIAVHTVNRFLQDNPDCFDLVEWVLFDTHT
ESVYEDEVDKIY
>Mature_172_residues
MYLIKTVKGDITKVTDVQAIVNAANNSLLGGGGVDGAIHRAAGPELLAECRTLHGCVTGEAKITKAYNLPCDYVIHTVGP
IWNGGRDREEELLANCYFNSMKLAMDNGIRSIAFPSISTGIYSFPVELAAKIAVHTVNRFLQDNPDCFDLVEWVLFDTHT
ESVYEDEVDKIY

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=152, Percent_Identity=60.5263157894737, Blast_Score=169, Evalue=8e-43,
Organism=Homo sapiens, GI13569840, Length=170, Percent_Identity=48.2352941176471, Blast_Score=159, Evalue=8e-40,
Organism=Homo sapiens, GI207450721, Length=151, Percent_Identity=37.7483443708609, Blast_Score=102, Evalue=2e-22,
Organism=Homo sapiens, GI8923143, Length=136, Percent_Identity=40.4411764705882, Blast_Score=102, Evalue=2e-22,
Organism=Homo sapiens, GI20336746, Length=173, Percent_Identity=31.2138728323699, Blast_Score=86, Evalue=1e-17,
Organism=Homo sapiens, GI154813199, Length=161, Percent_Identity=36.0248447204969, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI226371718, Length=154, Percent_Identity=34.4155844155844, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI93141018, Length=161, Percent_Identity=30.4347826086957, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI226371710, Length=154, Percent_Identity=34.4155844155844, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI226371706, Length=154, Percent_Identity=34.4155844155844, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI93141020, Length=161, Percent_Identity=30.4347826086957, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI4758496, Length=161, Percent_Identity=30.4347826086957, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI226371716, Length=154, Percent_Identity=34.4155844155844, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI226371714, Length=154, Percent_Identity=34.4155844155844, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI226371712, Length=154, Percent_Identity=34.4155844155844, Blast_Score=79, Evalue=2e-15,
Organism=Escherichia coli, GI1787283, Length=166, Percent_Identity=51.2048192771084, Blast_Score=155, Evalue=9e-40,
Organism=Caenorhabditis elegans, GI17538214, Length=156, Percent_Identity=45.5128205128205, Blast_Score=123, Evalue=4e-29,
Organism=Drosophila melanogaster, GI24586353, Length=135, Percent_Identity=36.2962962962963, Blast_Score=82, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 18884; Mature: 18884

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLIKTVKGDITKVTDVQAIVNAANNSLLGGGGVDGAIHRAAGPELLAECRTLHGCVTGE
CEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCC
AKITKAYNLPCDYVIHTVGPIWNGGRDREEELLANCYFNSMKLAMDNGIRSIAFPSISTG
EEEEEECCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHCC
IYSFPVELAAKIAVHTVNRFLQDNPDCFDLVEWVLFDTHTESVYEDEVDKIY
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MYLIKTVKGDITKVTDVQAIVNAANNSLLGGGGVDGAIHRAAGPELLAECRTLHGCVTGE
CEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCC
AKITKAYNLPCDYVIHTVGPIWNGGRDREEELLANCYFNSMKLAMDNGIRSIAFPSISTG
EEEEEECCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHCC
IYSFPVELAAKIAVHTVNRFLQDNPDCFDLVEWVLFDTHTESVYEDEVDKIY
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11889109 [H]