Definition Eubacterium eligens ATCC 27750 plasmid unnamed, complete sequence.
Accession NC_012780
Length 626,744

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The map label for this gene is yybJ [H]

Identifier: 238921856

GI number: 238921856

Start: 69263

End: 69919

Strand: Reverse

Name: yybJ [H]

Synonym: EUBELI_20089

Alternate gene names: 238921856

Gene position: 69919-69263 (Counterclockwise)

Preceding gene: 238921857

Following gene: 238921855

Centisome position: 11.16

GC content: 37.9

Gene sequence:

>657_bases
TTGGAGGATGTAGTTATGGTAATAAAGCTTACAAATGTGTCAAAGGTTATAAAGAAAGCAAAGGTACTTGATAATATTAA
TCTTGAACTTACAAGTGGCAGAGTGTATGGATTTAAAGGAAAGAATGGCTCAGGAAAAACAATGCTTATGAGAGTTATAT
GCGGTCTTATATCTGCGACAGAAGGAACTGTTGAGATAGATGGAAAGATTCTTGGAAAGGATATGACATTTCCGGAAAGT
GTTGGAGTGCTGATTGAGAATCCGGCATTCATAGGTAATTATACGGGATTTAAGAATCTTAAGGTTCTTGCATCAATCCA
GAACCGTGTTGATGATGAACATATAAAGAAAGTAATCCGTCAGGTAGGACTTGATCCTGACGATAAAAGAACATACAGGA
AATATTCACTGGGAATGAAGCAGAAACTAGGAATTGCTGCAGCCTATATGGAGAATCCAGACATTATTATACTTGATGAG
CCAATAAATGCGCTTGATGAAGCAGGAGCAAAGCAGGTTCATGAGATACTTGAGGAGCAGAAAAAGAGAGGAGCACTTAT
AATAATTGCCTGTCATGATAAGGAAGAACTTGAAATGCTGTCTGATGAGATAATTGAGATTTACGAGGGCAGGATTGTTG
CCAAAGAGAAAGCGTGA

Upstream 100 bases:

>100_bases
TGGACTGGATGTATGGAAAAGTATTGCGGCAGGAATTGTGACGGGAATAACTGGGGTTGTGTCAGGTGGAATCCGTTTCT
GCAAAAAAGATATATTGTGA

Downstream 100 bases:

>100_bases
ATGAAGGCAAATGAAAACACTGGAATTTATAAAAAATAACAATAGTAAAAATGATATAGAAGAATCTGTTATAGTGTTTG
GACTTGATATGTTAAAAACA

Product: antibiotic transport system ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MEDVVMVIKLTNVSKVIKKAKVLDNINLELTSGRVYGFKGKNGSGKTMLMRVICGLISATEGTVEIDGKILGKDMTFPES
VGVLIENPAFIGNYTGFKNLKVLASIQNRVDDEHIKKVIRQVGLDPDDKRTYRKYSLGMKQKLGIAAAYMENPDIIILDE
PINALDEAGAKQVHEILEEQKKRGALIIIACHDKEELEMLSDEIIEIYEGRIVAKEKA

Sequences:

>Translated_218_residues
MEDVVMVIKLTNVSKVIKKAKVLDNINLELTSGRVYGFKGKNGSGKTMLMRVICGLISATEGTVEIDGKILGKDMTFPES
VGVLIENPAFIGNYTGFKNLKVLASIQNRVDDEHIKKVIRQVGLDPDDKRTYRKYSLGMKQKLGIAAAYMENPDIIILDE
PINALDEAGAKQVHEILEEQKKRGALIIIACHDKEELEMLSDEIIEIYEGRIVAKEKA
>Mature_218_residues
MEDVVMVIKLTNVSKVIKKAKVLDNINLELTSGRVYGFKGKNGSGKTMLMRVICGLISATEGTVEIDGKILGKDMTFPES
VGVLIENPAFIGNYTGFKNLKVLASIQNRVDDEHIKKVIRQVGLDPDDKRTYRKYSLGMKQKLGIAAAYMENPDIIILDE
PINALDEAGAKQVHEILEEQKKRGALIIIACHDKEELEMLSDEIIEIYEGRIVAKEKA

Specific function: Part Of The Binding-Protein-Dependent Transport System Metniq For D-Methionine And The Toxic Methionine Analog Alpha- Methyl-Methionine. Probably Responsible For Energy Coupling To The Transport System. [C]

COG id: COG1131

COG function: function code V; ABC-type multidrug transport system, ATPase component

Gene ontology:

Cell location: Inner Membrane-Associated [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27881501, Length=215, Percent_Identity=27.4418604651163, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI30795238, Length=215, Percent_Identity=27.4418604651163, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI116734710, Length=220, Percent_Identity=28.6363636363636, Blast_Score=91, Evalue=9e-19,
Organism=Homo sapiens, GI21536376, Length=213, Percent_Identity=28.169014084507, Blast_Score=89, Evalue=2e-18,
Organism=Homo sapiens, GI31657092, Length=212, Percent_Identity=27.3584905660377, Blast_Score=84, Evalue=8e-17,
Organism=Homo sapiens, GI105990541, Length=194, Percent_Identity=24.7422680412371, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI45446740, Length=213, Percent_Identity=28.6384976525822, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI47078218, Length=213, Percent_Identity=28.6384976525822, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI27262624, Length=216, Percent_Identity=25.9259259259259, Blast_Score=77, Evalue=9e-15,
Organism=Homo sapiens, GI27262626, Length=216, Percent_Identity=25.9259259259259, Blast_Score=77, Evalue=9e-15,
Organism=Homo sapiens, GI153792144, Length=215, Percent_Identity=26.5116279069767, Blast_Score=75, Evalue=3e-14,
Organism=Homo sapiens, GI27477115, Length=201, Percent_Identity=27.363184079602, Blast_Score=74, Evalue=8e-14,
Organism=Homo sapiens, GI150417984, Length=212, Percent_Identity=25.9433962264151, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI6005701, Length=194, Percent_Identity=27.8350515463918, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI27436953, Length=215, Percent_Identity=24.6511627906977, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI62526033, Length=209, Percent_Identity=27.2727272727273, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI11967969, Length=207, Percent_Identity=23.6714975845411, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI9961250, Length=183, Percent_Identity=26.775956284153, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI1786398, Length=226, Percent_Identity=27.8761061946903, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788761, Length=215, Percent_Identity=27.4418604651163, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI87081782, Length=217, Percent_Identity=25.3456221198157, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1787370, Length=210, Percent_Identity=27.1428571428571, Blast_Score=86, Evalue=1e-18,
Organism=Escherichia coli, GI1786563, Length=194, Percent_Identity=29.8969072164948, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1787500, Length=212, Percent_Identity=31.1320754716981, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1790467, Length=209, Percent_Identity=28.2296650717703, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1786698, Length=212, Percent_Identity=27.3584905660377, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1788472, Length=221, Percent_Identity=24.8868778280543, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787105, Length=210, Percent_Identity=27.6190476190476, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1788210, Length=228, Percent_Identity=26.3157894736842, Blast_Score=81, Evalue=4e-17,
Organism=Escherichia coli, GI1787712, Length=210, Percent_Identity=24.2857142857143, Blast_Score=80, Evalue=7e-17,
Organism=Escherichia coli, GI48995001, Length=216, Percent_Identity=22.6851851851852, Blast_Score=80, Evalue=9e-17,
Organism=Escherichia coli, GI48994943, Length=227, Percent_Identity=28.1938325991189, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI87081709, Length=216, Percent_Identity=27.3148148148148, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788506, Length=220, Percent_Identity=27.7272727272727, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1788450, Length=218, Percent_Identity=24.3119266055046, Blast_Score=77, Evalue=6e-16,
Organism=Escherichia coli, GI1787758, Length=212, Percent_Identity=25, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788165, Length=208, Percent_Identity=25.4807692307692, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI87081791, Length=216, Percent_Identity=22.6851851851852, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787029, Length=215, Percent_Identity=26.9767441860465, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI87081834, Length=207, Percent_Identity=24.1545893719807, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1789991, Length=223, Percent_Identity=26.9058295964126, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1786319, Length=200, Percent_Identity=29, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1789032, Length=199, Percent_Identity=29.1457286432161, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1789873, Length=215, Percent_Identity=22.3255813953488, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1787547, Length=201, Percent_Identity=27.363184079602, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1786803, Length=207, Percent_Identity=25.1207729468599, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1786345, Length=223, Percent_Identity=24.6636771300448, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790162, Length=234, Percent_Identity=26.0683760683761, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1790525, Length=220, Percent_Identity=23.6363636363636, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790190, Length=225, Percent_Identity=24.4444444444444, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1788225, Length=225, Percent_Identity=25.3333333333333, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1789962, Length=210, Percent_Identity=26.6666666666667, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1786872, Length=216, Percent_Identity=26.3888888888889, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1789890, Length=219, Percent_Identity=26.4840182648402, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI145693107, Length=215, Percent_Identity=23.7209302325581, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87082268, Length=218, Percent_Identity=25.2293577981651, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1789672, Length=219, Percent_Identity=26.4840182648402, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1789891, Length=210, Percent_Identity=27.1428571428571, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787792, Length=209, Percent_Identity=24.4019138755981, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1786253, Length=217, Percent_Identity=23.0414746543779, Blast_Score=64, Evalue=5e-12,
Organism=Escherichia coli, GI1787164, Length=204, Percent_Identity=24.5098039215686, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI48994883, Length=215, Percent_Identity=25.5813953488372, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789593, Length=210, Percent_Identity=21.4285714285714, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI1787759, Length=215, Percent_Identity=25.1162790697674, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1787089, Length=225, Percent_Identity=24, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1789963, Length=217, Percent_Identity=28.5714285714286, Blast_Score=61, Evalue=5e-11,
Organism=Escherichia coli, GI1786703, Length=222, Percent_Identity=22.5225225225225, Blast_Score=61, Evalue=7e-11,
Organism=Escherichia coli, GI87082267, Length=204, Percent_Identity=24.5098039215686, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=207, Percent_Identity=28.0193236714976, Blast_Score=97, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI17510237, Length=198, Percent_Identity=25.7575757575758, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI71983523, Length=215, Percent_Identity=25.1162790697674, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI71983516, Length=215, Percent_Identity=25.1162790697674, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI71983510, Length=215, Percent_Identity=25.1162790697674, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17565586, Length=204, Percent_Identity=24.5098039215686, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI115532730, Length=215, Percent_Identity=27.4418604651163, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI193202349, Length=208, Percent_Identity=27.8846153846154, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI221500365, Length=214, Percent_Identity=27.5700934579439, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI116007184, Length=214, Percent_Identity=27.5700934579439, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24666092, Length=214, Percent_Identity=21.9626168224299, Blast_Score=80, Evalue=8e-16,
Organism=Drosophila melanogaster, GI221512771, Length=215, Percent_Identity=25.1162790697674, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI28574150, Length=217, Percent_Identity=27.1889400921659, Blast_Score=77, Evalue=7e-15,
Organism=Drosophila melanogaster, GI116007328, Length=217, Percent_Identity=27.1889400921659, Blast_Score=77, Evalue=7e-15,
Organism=Drosophila melanogaster, GI24666836, Length=232, Percent_Identity=26.2931034482759, Blast_Score=75, Evalue=2e-14,
Organism=Drosophila melanogaster, GI28573573, Length=202, Percent_Identity=29.2079207920792, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI28573571, Length=202, Percent_Identity=29.2079207920792, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24648314, Length=210, Percent_Identity=23.8095238095238, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24643674, Length=207, Percent_Identity=24.6376811594203, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24582014, Length=181, Percent_Identity=28.1767955801105, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24582012, Length=181, Percent_Identity=28.1767955801105, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI17647959, Length=201, Percent_Identity=27.363184079602, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 24232; Mature: 24232

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MEDVVMVIKLTNVSKVIKKAKVLDNINLELTSGRVYGFKGKNGSGKTMLMRVICGLISAT
CCCEEEEEEECCHHHHHHHHHHHCCCCEEEECCEEEEECCCCCCCHHHHHHHHHHHHHCC
EGTVEIDGKILGKDMTFPESVGVLIENPAFIGNYTGFKNLKVLASIQNRVDDEHIKKVIR
CCEEEECCEEECCCCCCCCCCCEEEECCEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHH
QVGLDPDDKRTYRKYSLGMKQKLGIAAAYMENPDIIILDEPINALDEAGAKQVHEILEEQ
HHCCCCCCHHHHHHHHCCHHHHHCEEEEEECCCCEEEECCCHHHHHHCCHHHHHHHHHHH
KKRGALIIIACHDKEELEMLSDEIIEIYEGRIVAKEKA
HHCCCEEEEEECCHHHHHHHHHHHHHHHCCEEEEECCC
>Mature Secondary Structure
MEDVVMVIKLTNVSKVIKKAKVLDNINLELTSGRVYGFKGKNGSGKTMLMRVICGLISAT
CCCEEEEEEECCHHHHHHHHHHHCCCCEEEECCEEEEECCCCCCCHHHHHHHHHHHHHCC
EGTVEIDGKILGKDMTFPESVGVLIENPAFIGNYTGFKNLKVLASIQNRVDDEHIKKVIR
CCEEEECCEEECCCCCCCCCCCEEEECCEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHH
QVGLDPDDKRTYRKYSLGMKQKLGIAAAYMENPDIIILDEPINALDEAGAKQVHEILEEQ
HHCCCCCCHHHHHHHHCCHHHHHCEEEEEECCCCEEEECCCHHHHHHCCHHHHHHHHHHH
KKRGALIIIACHDKEELEMLSDEIIEIYEGRIVAKEKA
HHCCCEEEEEECCHHHHHHHHHHHHHHHCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1938973; 7584024; 9384377 [H]