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The map label for this gene is atpD [H]

Identifier: 238921743

GI number: 238921743

Start: 3789484

End: 3790866

Strand: Direct

Name: atpD [H]

Synonym: NT01EI_3912

Alternate gene names: 238921743

Gene position: 3789484-3790866 (Clockwise)

Preceding gene: 238921742

Following gene: 238921744

Centisome position: 99.4

GC content: 57.27

Gene sequence:

>1383_bases
ATGGCTACTGGAAAGATTATCCAGGTTATCGGCGCCGTGGTGGACGTGGAGTTCCCGCAGGATGCCGTGCCGAAGGTGTA
TAACGCACTGGAGGTAAAAGGCGGTGCCACTAAACTGGTACTGGAAGTTCAGCAGCAGCTGGGTGGTGGCGTCGTTCGCT
GCATCGCAATGGGTTCTTCTGACGGCCTGCGTCGCGGGCTGGATGTAGAAGACCAAAACCATCCGATCGAAGTCCCGGTG
GGTAAGGCAACACTGGGCCGTATCATGAACGTACTGGGCGATCCGGTCGATATGAAGGGCGAGATCGGCGAGGAAGAGCG
CTGGGCAATTCACCGCGCAGCGCCGAGCTACGAAGATCTGTCCAACTCCCAGGAGCTGCTGGAGACCGGCATCAAGGTTA
TCGACCTGATCTGCCCGTTCGCTAAAGGCGGTAAGGTGGGTCTGTTCGGGGGCGCCGGTGTCGGCAAGACCGTTAACATG
ATGGAGCTTATCCGTAACATCGCTATCGAGCACTCCGGTTACTCCGTTTTCGCCGGCGTGGGTGAGCGTACCCGTGAGGG
TAATGACTTCTACCACGAGATGACGGATTCCAACGTACTGGACAAAGTGTCTCTGGTCTATGGCCAGATGAATGAGCCGC
CGGGAAACCGTCTGCGCGTTGCACTGACCGGTCTGACCATGGCGGAGAAGTTCCGCGATGAAGGCCGCGACGTTCTGCTA
TTTATCGATAACATCTACCGCTATACCCTGGCCGGTACCGAGGTATCTGCACTGTTGGGCCGTATGCCGTCAGCGGTAGG
TTATCAGCCGACGCTGGCAGAAGAGATGGGCGTGTTGCAGGAGCGTATTACCTCTACGAAAACCGGCTCTATCACCTCAG
TTCAGGCGGTATACGTTCCTGCAGATGACCTGACTGACCCGTCGCCGGCAACCACCTTTGCCCACCTGGATGCCACCGTG
GTTCTGAGCCGTCAGATCGCCTCTCTGGGTATCTACCCGGCCGTTGACCCGCTGGACTCGACCAGCCGTCAGCTGGATCC
TCTGGTGGTGGGTCAGGAGCACTATGACACGGCACGCGGCGTGCAGTCCATTCTGCAGCGCTATCAGGAGCTGAAGGATA
TCATCGCCATTCTGGGTATGGATGAGCTGTCTGAAGAGGACAAGCTGGTCGTGGCCCGTGCGCGTAAGATCCAGCGCTTC
CTGTCACAGCCGTTCTTCGTTGCGGAAGTGTTCACCGGTTCTCCTGGCAAGTACGTTTCGCTGAAAGACACCATCATGGG
CTTTAAAGGCATCATGAACGGTGACTATGACCATCTGCCGGAGCAGGCGTTCTACATGGTGGGCTCTATCGACGAAGCCG
TGGAAAAAGCCAAGAAACTGTAA

Upstream 100 bases:

>100_bases
AAGGCTCGTCAGGCCAGCATCACCCAGGAGCTCACCGAGATCGTCTCGGGCGCTGCTGCGGTTTAAGAGCTAGGTTTACG
AATTACGTAGAGGATTCAAG

Downstream 100 bases:

>100_bases
CGCCTGATAGGAGGGTGATATGGCTATGACTTTCCATCTGGATGTGGTCAGCGCGGAGCGTCAGATGTTCTCCGGGCTGG
TGCAGAAAATCCAGGTGACG

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 460; Mature: 459

Protein sequence:

>460_residues
MATGKIIQVIGAVVDVEFPQDAVPKVYNALEVKGGATKLVLEVQQQLGGGVVRCIAMGSSDGLRRGLDVEDQNHPIEVPV
GKATLGRIMNVLGDPVDMKGEIGEEERWAIHRAAPSYEDLSNSQELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNM
MELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMTDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLL
FIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDATV
VLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDTARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKIQRF
LSQPFFVAEVFTGSPGKYVSLKDTIMGFKGIMNGDYDHLPEQAFYMVGSIDEAVEKAKKL

Sequences:

>Translated_460_residues
MATGKIIQVIGAVVDVEFPQDAVPKVYNALEVKGGATKLVLEVQQQLGGGVVRCIAMGSSDGLRRGLDVEDQNHPIEVPV
GKATLGRIMNVLGDPVDMKGEIGEEERWAIHRAAPSYEDLSNSQELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNM
MELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMTDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLL
FIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDATV
VLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDTARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKIQRF
LSQPFFVAEVFTGSPGKYVSLKDTIMGFKGIMNGDYDHLPEQAFYMVGSIDEAVEKAKKL
>Mature_459_residues
ATGKIIQVIGAVVDVEFPQDAVPKVYNALEVKGGATKLVLEVQQQLGGGVVRCIAMGSSDGLRRGLDVEDQNHPIEVPVG
KATLGRIMNVLGDPVDMKGEIGEEERWAIHRAAPSYEDLSNSQELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMM
ELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMTDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLF
IDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDATVV
LSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDTARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKIQRFL
SQPFFVAEVFTGSPGKYVSLKDTIMGFKGIMNGDYDHLPEQAFYMVGSIDEAVEKAKKL

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=466, Percent_Identity=70.6008583690987, Blast_Score=657, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=321, Percent_Identity=28.0373831775701, Blast_Score=117, Evalue=3e-26,
Organism=Homo sapiens, GI19913428, Length=356, Percent_Identity=24.1573033707865, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI50345984, Length=303, Percent_Identity=24.7524752475248, Blast_Score=101, Evalue=2e-21,
Organism=Homo sapiens, GI4757810, Length=303, Percent_Identity=24.7524752475248, Blast_Score=101, Evalue=2e-21,
Organism=Homo sapiens, GI19913426, Length=356, Percent_Identity=23.5955056179775, Blast_Score=99, Evalue=9e-21,
Organism=Escherichia coli, GI1790170, Length=460, Percent_Identity=95.2173913043478, Blast_Score=896, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=305, Percent_Identity=30.4918032786885, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1790172, Length=340, Percent_Identity=25.5882352941176, Blast_Score=109, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI25144756, Length=466, Percent_Identity=69.0987124463519, Blast_Score=646, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17565854, Length=321, Percent_Identity=28.9719626168224, Blast_Score=119, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI17510931, Length=348, Percent_Identity=25.2873563218391, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI71988080, Length=303, Percent_Identity=25.0825082508251, Blast_Score=103, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI71988063, Length=303, Percent_Identity=24.7524752475248, Blast_Score=102, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI17570191, Length=345, Percent_Identity=23.768115942029, Blast_Score=101, Evalue=9e-22,
Organism=Caenorhabditis elegans, GI71988074, Length=264, Percent_Identity=24.2424242424242, Blast_Score=85, Evalue=9e-17,
Organism=Saccharomyces cerevisiae, GI6322581, Length=458, Percent_Identity=67.9039301310044, Blast_Score=624, Evalue=1e-180,
Organism=Saccharomyces cerevisiae, GI6319603, Length=355, Percent_Identity=25.6338028169014, Blast_Score=107, Evalue=3e-24,
Organism=Saccharomyces cerevisiae, GI6319370, Length=368, Percent_Identity=24.7282608695652, Blast_Score=100, Evalue=4e-22,
Organism=Saccharomyces cerevisiae, GI6320016, Length=233, Percent_Identity=27.4678111587983, Blast_Score=85, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24638766, Length=465, Percent_Identity=69.4623655913978, Blast_Score=641, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=465, Percent_Identity=66.2365591397849, Blast_Score=604, Evalue=1e-173,
Organism=Drosophila melanogaster, GI20129479, Length=331, Percent_Identity=27.190332326284, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24583992, Length=346, Percent_Identity=27.4566473988439, Blast_Score=116, Evalue=3e-26,
Organism=Drosophila melanogaster, GI24583988, Length=321, Percent_Identity=27.4143302180685, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI24583986, Length=321, Percent_Identity=27.4143302180685, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI24583984, Length=321, Percent_Identity=27.4143302180685, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI281361666, Length=348, Percent_Identity=24.1379310344828, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24646341, Length=348, Percent_Identity=24.1379310344828, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI17136796, Length=348, Percent_Identity=24.1379310344828, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24658560, Length=303, Percent_Identity=25.0825082508251, Blast_Score=100, Evalue=4e-21,
Organism=Drosophila melanogaster, GI24638768, Length=91, Percent_Identity=56.043956043956, Blast_Score=96, Evalue=7e-20,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 50044; Mature: 49913

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATGKIIQVIGAVVDVEFPQDAVPKVYNALEVKGGATKLVLEVQQQLGGGVVRCIAMGSS
CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEEEECCC
DGLRRGLDVEDQNHPIEVPVGKATLGRIMNVLGDPVDMKGEIGEEERWAIHRAAPSYEDL
CHHHCCCCCCCCCCCEECCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCHHHH
SNSQELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGV
CCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEECC
GERTREGNDFYHEMTDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLL
CCCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHHHCCCEEEE
FIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVP
EEECHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC
ADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDTARG
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCEEECCHHHHHHHH
VQSILQRYQELKDIIAILGMDELSEEDKLVVARARKIQRFLSQPFFVAEVFTGSPGKYVS
HHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEE
LKDTIMGFKGIMNGDYDHLPEQAFYMVGSIDEAVEKAKKL
HHHHHHHHHHHCCCCHHHCCHHHHHHHCCHHHHHHHHHCC
>Mature Secondary Structure 
ATGKIIQVIGAVVDVEFPQDAVPKVYNALEVKGGATKLVLEVQQQLGGGVVRCIAMGSS
CCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEEEECCC
DGLRRGLDVEDQNHPIEVPVGKATLGRIMNVLGDPVDMKGEIGEEERWAIHRAAPSYEDL
CHHHCCCCCCCCCCCEECCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCHHHH
SNSQELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGV
CCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEECC
GERTREGNDFYHEMTDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLL
CCCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHHHCCCEEEE
FIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVP
EEECHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC
ADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDTARG
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCEEECCHHHHHHHH
VQSILQRYQELKDIIAILGMDELSEEDKLVVARARKIQRFLSQPFFVAEVFTGSPGKYVS
HHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEE
LKDTIMGFKGIMNGDYDHLPEQAFYMVGSIDEAVEKAKKL
HHHHHHHHHHHCCCCHHHCCHHHHHHHCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA