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The map label for this gene is atpH

Identifier: 238921740

GI number: 238921740

Start: 3786436

End: 3786969

Strand: Direct

Name: atpH

Synonym: NT01EI_3909

Alternate gene names: 238921740

Gene position: 3786436-3786969 (Clockwise)

Preceding gene: 238921739

Following gene: 238921741

Centisome position: 99.32

GC content: 52.62

Gene sequence:

>534_bases
ATGTCTGAATTTATCACGGTAGCTCGCCCCTACGCCAAAGCAGCTTTTGACTTTGCTGTTGAGCATAACAGCCTGGATCG
TTGGCAGAACATGCTGACGTTCAGCGCTGAGGTGACCCGCAATGAAAGCGTGGCCGAAATGTTGTCCGGTGCCTTGGCTC
CGGAGACCCTTGCGGCATTCTTCATTGATATTTGCGGCGACCAGCTCGATGAATCCGGTCAGAACTTCATTAAAGTGATG
GCGGAAAACGGACGTTTACAGGTTATTCCTGACGTGCTGCAGCAGTTTATTGCACTGCGTGATGCGATGGAAGCGACGGC
AGATGTGGAAGTCACCTCTGCAGCGCCCCTGACTCAGGCGCAGCTGGATAAAATCAGCGCCGCAATGGAACAACGTCTGT
CACGTAAAGTGAAGCTGAATTGCAAAATTGATAAGTCTGTATTGGCCGGCGTGGTTATCCGCGCGGGTGACCTGGTGATC
GATGGCAGCATTCGTGGCCGTTTGGATCGCCTGACAGACGTCTTGCAGTCTTAA

Upstream 100 bases:

>100_bases
TCGCTGGTGCCGAGAAAATTATTGAACGTTCCGTGGATGAAGCTGCGAACAGCGACATCGTCGATAAACTGGTCGCTGAA
CTGTAAGGAGGGAGGGGCCG

Downstream 100 bases:

>100_bases
GGGGACTGGAGCATGCAACTGAATTCCACCGAAATCAGCGAACTGATCAAGCAGCGCATTGCTCAGTTCGACGTGGTGAG
CGAAGCTCACAACGAAGGTA

Product: F0F1 ATP synthase subunit delta

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F(1) sector subunit delta; F-type ATPase subunit delta; F-ATPase subunit delta

Number of amino acids: Translated: 177; Mature: 176

Protein sequence:

>177_residues
MSEFITVARPYAKAAFDFAVEHNSLDRWQNMLTFSAEVTRNESVAEMLSGALAPETLAAFFIDICGDQLDESGQNFIKVM
AENGRLQVIPDVLQQFIALRDAMEATADVEVTSAAPLTQAQLDKISAAMEQRLSRKVKLNCKIDKSVLAGVVIRAGDLVI
DGSIRGRLDRLTDVLQS

Sequences:

>Translated_177_residues
MSEFITVARPYAKAAFDFAVEHNSLDRWQNMLTFSAEVTRNESVAEMLSGALAPETLAAFFIDICGDQLDESGQNFIKVM
AENGRLQVIPDVLQQFIALRDAMEATADVEVTSAAPLTQAQLDKISAAMEQRLSRKVKLNCKIDKSVLAGVVIRAGDLVI
DGSIRGRLDRLTDVLQS
>Mature_176_residues
SEFITVARPYAKAAFDFAVEHNSLDRWQNMLTFSAEVTRNESVAEMLSGALAPETLAAFFIDICGDQLDESGQNFIKVMA
ENGRLQVIPDVLQQFIALRDAMEATADVEVTSAAPLTQAQLDKISAAMEQRLSRKVKLNCKIDKSVLAGVVIRAGDLVID
GSIRGRLDRLTDVLQS

Specific function: This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction

COG id: COG0712

COG function: function code C; F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein)

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase delta chain family

Homologues:

Organism=Homo sapiens, GI4502303, Length=168, Percent_Identity=26.7857142857143, Blast_Score=67, Evalue=6e-12,
Organism=Escherichia coli, GI1790173, Length=177, Percent_Identity=76.8361581920904, Blast_Score=287, Evalue=2e-79,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPD_EDWI9 (C5BF37)

Other databases:

- EMBL:   CP001600
- RefSeq:   YP_002935255.1
- GeneID:   7961475
- GenomeReviews:   CP001600_GR
- KEGG:   eic:NT01EI_3909
- OMA:   FIAICGE
- ProtClustDB:   PRK05758
- HAMAP:   MF_01416
- InterPro:   IPR000711
- InterPro:   IPR020781
- Gene3D:   G3DSA:1.10.520.20
- PANTHER:   PTHR11910
- PRINTS:   PR00125
- TIGRFAMs:   TIGR01145

Pfam domain/function: PF00213 OSCP; SSF47928 ATPsynt_OSCP

EC number: 3.6.3.14

Molecular weight: Translated: 19390; Mature: 19259

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: PS00389 ATPASE_DELTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEFITVARPYAKAAFDFAVEHNSLDRWQNMLTFSAEVTRNESVAEMLSGALAPETLAAF
CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHH
FIDICGDQLDESGQNFIKVMAENGRLQVIPDVLQQFIALRDAMEATADVEVTSAAPLTQA
HHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHH
QLDKISAAMEQRLSRKVKLNCKIDKSVLAGVVIRAGDLVIDGSIRGRLDRLTDVLQS
HHHHHHHHHHHHHHHHEEEEEEECHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
SEFITVARPYAKAAFDFAVEHNSLDRWQNMLTFSAEVTRNESVAEMLSGALAPETLAAF
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHH
FIDICGDQLDESGQNFIKVMAENGRLQVIPDVLQQFIALRDAMEATADVEVTSAAPLTQA
HHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHH
QLDKISAAMEQRLSRKVKLNCKIDKSVLAGVVIRAGDLVIDGSIRGRLDRLTDVLQS
HHHHHHHHHHHHHHHHEEEEEEECHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA