| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is uspG [H]
Identifier: 238921623
GI number: 238921623
Start: 3662225
End: 3662653
Strand: Reverse
Name: uspG [H]
Synonym: NT01EI_3778
Alternate gene names: 238921623
Gene position: 3662653-3662225 (Counterclockwise)
Preceding gene: 238921624
Following gene: 238921622
Centisome position: 96.07
GC content: 49.65
Gene sequence:
>429_bases ATGTACAAAAATATTTTGGTACCTGTCGATATTGAAGAGGATGTACTGACACAGAATGCGTTGGAGCATATGATTTATAT GGCAAAGCTAACGGATGCCGCAGTGCATTTTCTGTATGTGCTGCCGGATGCCCAAGCGTTTGTCACCGCCTACTCATTTG GTATTAAAGAGTTTGAAAACAAGGCAGTTGCTAATGCGGAGGAGAAGCTGCTGACGTTGATCGAGAGTATCGACCTGCCG CGCGAGTGCATGTCATATACTATTCGCTTTGGTACGCCGCGTGATGAGGCGTTGCAGCAGGCAGAGGAGATGGGTGCCGA TCTGATTGTGGTTGGCTCGCATCGTCCCAGTGTGAAGACCTATCTACTTGGCTCTAATGCAGCGGCGATTGTGCGCCATG CCAAGACCAATGTGCTGGTGATCCGCTGA
Upstream 100 bases:
>100_bases CTATAGCTCCGGGCGAGTGACCAGCAGGTACTGGTGAATGTGACTCGGGGATCGGTGCTGAAGATGACGCACTTTGAGAG TGAGCCAGGAGGGGGTTACG
Downstream 100 bases:
>100_bases GCAGCGGCGCGTCACGTATGTGCTTAAGGCACTGTGTCACCGTGCGTGATACGGTGCCTGGACGAGTGCGACCGCGCGCG AGGGAAAGCGGAGTACAGAA
Product: universal stress protein family
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 142; Mature: 142
Protein sequence:
>142_residues MYKNILVPVDIEEDVLTQNALEHMIYMAKLTDAAVHFLYVLPDAQAFVTAYSFGIKEFENKAVANAEEKLLTLIESIDLP RECMSYTIRFGTPRDEALQQAEEMGADLIVVGSHRPSVKTYLLGSNAAAIVRHAKTNVLVIR
Sequences:
>Translated_142_residues MYKNILVPVDIEEDVLTQNALEHMIYMAKLTDAAVHFLYVLPDAQAFVTAYSFGIKEFENKAVANAEEKLLTLIESIDLP RECMSYTIRFGTPRDEALQQAEEMGADLIVVGSHRPSVKTYLLGSNAAAIVRHAKTNVLVIR >Mature_142_residues MYKNILVPVDIEEDVLTQNALEHMIYMAKLTDAAVHFLYVLPDAQAFVTAYSFGIKEFENKAVANAEEKLLTLIESIDLP RECMSYTIRFGTPRDEALQQAEEMGADLIVVGSHRPSVKTYLLGSNAAAIVRHAKTNVLVIR
Specific function: Unknown
COG id: COG0589
COG function: function code T; Universal stress protein UspA and related nucleotide-binding proteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the universal stress protein A family [H]
Homologues:
Organism=Escherichia coli, GI1786824, Length=143, Percent_Identity=38.4615384615385, Blast_Score=113, Evalue=4e-27, Organism=Escherichia coli, GI87081893, Length=145, Percent_Identity=40.6896551724138, Blast_Score=111, Evalue=2e-26,
Paralogues:
None
Copy number: 180 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). 120 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014729 - InterPro: IPR006015 - InterPro: IPR006016 [H]
Pfam domain/function: PF00582 Usp [H]
EC number: NA
Molecular weight: Translated: 15856; Mature: 15856
Theoretical pI: Translated: 4.95; Mature: 4.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYKNILVPVDIEEDVLTQNALEHMIYMAKLTDAAVHFLYVLPDAQAFVTAYSFGIKEFEN CCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHC KAVANAEEKLLTLIESIDLPRECMSYTIRFGTPRDEALQQAEEMGADLIVVGSHRPSVKT HHHCCHHHHHHHHHHHCCCCHHHHHEEEECCCCHHHHHHHHHHCCCCEEEECCCCCCEEE YLLGSNAAAIVRHAKTNVLVIR EEECCCHHHHEEECCCCEEEEC >Mature Secondary Structure MYKNILVPVDIEEDVLTQNALEHMIYMAKLTDAAVHFLYVLPDAQAFVTAYSFGIKEFEN CCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHC KAVANAEEKLLTLIESIDLPRECMSYTIRFGTPRDEALQQAEEMGADLIVVGSHRPSVKT HHHCCHHHHHHHHHHHCCCCHHHHHEEEECCCCHHHHHHHHHHCCCCEEEECCCCCCEEE YLLGSNAAAIVRHAKTNVLVIR EEECCCHHHHEEECCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]