| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is dppD [H]
Identifier: 238921609
GI number: 238921609
Start: 3646392
End: 3647372
Strand: Reverse
Name: dppD [H]
Synonym: NT01EI_3762
Alternate gene names: 238921609
Gene position: 3647372-3646392 (Counterclockwise)
Preceding gene: 238921610
Following gene: 238921608
Centisome position: 95.67
GC content: 63.61
Gene sequence:
>981_bases ATGGCATTACTGGATGTAGATCAGCTATCGGTGCATTTTGGTAACGATAGTGCCCCTTTCCGTGCGGTTGACCGCATCAG CTACCAGGTTGAACAGGGAGAGGTGGTGGGGATTGTCGGTGAGTCCGGCTCCGGCAAATCGGTCAGCTCACTGGCCGTTA TGGGGCTGATCGATTTTCCCGGGCGGGTGATGGCACAGCGGCTGAGCTTTAACGGCGCCGATCTGCAGCGTATCTCCGAG CGGGAGCGACGCCAGCTGGTGGGGGCCGAGGTGGCGATGATATTCCAAGACCCGATGACCAGCCTGAATCCCTGCTACAC GGTGGGATTTCAGATTATGGAGGCGCTGAAGGTGCATCAGGGGGGCAACCGGCGTACCCGGCGCCAGCGTGCCATCGATC TGCTTACTCAGGTCGGCATTCCCGATCCCGCCTCGCGTCTGTCGGTCTATCCGCATCAGCTTTCCGGCGGTATGAGTCAG CGGATGATGATCGCCATGGCGATCGCCTGCCGTCCCAAGCTGCTGATTGCCGATGAGCCGACCACTGCGCTGGATGTGAC CATTCAGGCGCAGATCATCGAACTGCTGCTGGCGCTGCAGCAGCGGGAAAATATGGCGCTGGTGCTGATCACCCATGACC TGGCGCTGGTGGCGGAGGCGGCACATAAGATCATCGTGATGTACGCCGGGCAGGTGGTGGAGTCCGGGCTGGCCGGCGAG ATTTTCCACACGCCGCGTCACCCCTATACCCAGGCGCTGCTGCGGGCGCTGCCCGAGTTTGCGGTGGACGGCGAGCGTCT GGTGTCGCTGCCGGGGGTGGTACCGGGTAAGTACGATCGCCCGACGGGGTGCCTGCTCAATCCGCGCTGCCCCTATGCGA CCGAGCAGTGCCGCCGCGAGGAGCCGTCGCTGCGCCGCCTGCACGGGCGGGCGGTGAAGTGCCACACCCCATTGGACGAC GCCGGGAGGCCGACAGCATGA
Upstream 100 bases:
>100_bases CCCGGACTGGCCATTCTGTTGACGGTACTGGCGTTTAATCTGATGGGCGACGGCCTGCGCGATGCGCTGGATCCGAAGTT GAAGCAGTAAGGAGAGGGAC
Downstream 100 bases:
>100_bases GTGAAGCCATATTACAGACGCCGTTACTGCAGGCGGTGGACCTGAAAAAGCATTATCCGGTCAAGAGCGGGCTGTTTTCC CAGGAAAGGCTGGTCAAGGC
Product: dipeptide transporter ATP-binding subunit
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 326; Mature: 325
Protein sequence:
>326_residues MALLDVDQLSVHFGNDSAPFRAVDRISYQVEQGEVVGIVGESGSGKSVSSLAVMGLIDFPGRVMAQRLSFNGADLQRISE RERRQLVGAEVAMIFQDPMTSLNPCYTVGFQIMEALKVHQGGNRRTRRQRAIDLLTQVGIPDPASRLSVYPHQLSGGMSQ RMMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLALQQRENMALVLITHDLALVAEAAHKIIVMYAGQVVESGLAGE IFHTPRHPYTQALLRALPEFAVDGERLVSLPGVVPGKYDRPTGCLLNPRCPYATEQCRREEPSLRRLHGRAVKCHTPLDD AGRPTA
Sequences:
>Translated_326_residues MALLDVDQLSVHFGNDSAPFRAVDRISYQVEQGEVVGIVGESGSGKSVSSLAVMGLIDFPGRVMAQRLSFNGADLQRISE RERRQLVGAEVAMIFQDPMTSLNPCYTVGFQIMEALKVHQGGNRRTRRQRAIDLLTQVGIPDPASRLSVYPHQLSGGMSQ RMMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLALQQRENMALVLITHDLALVAEAAHKIIVMYAGQVVESGLAGE IFHTPRHPYTQALLRALPEFAVDGERLVSLPGVVPGKYDRPTGCLLNPRCPYATEQCRREEPSLRRLHGRAVKCHTPLDD AGRPTA >Mature_325_residues ALLDVDQLSVHFGNDSAPFRAVDRISYQVEQGEVVGIVGESGSGKSVSSLAVMGLIDFPGRVMAQRLSFNGADLQRISER ERRQLVGAEVAMIFQDPMTSLNPCYTVGFQIMEALKVHQGGNRRTRRQRAIDLLTQVGIPDPASRLSVYPHQLSGGMSQR MMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLALQQRENMALVLITHDLALVAEAAHKIIVMYAGQVVESGLAGEI FHTPRHPYTQALLRALPEFAVDGERLVSLPGVVPGKYDRPTGCLLNPRCPYATEQCRREEPSLRRLHGRAVKCHTPLDDA GRPTA
Specific function: Part of the binding-protein-dependent transport system for dipeptides. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI9961250, Length=239, Percent_Identity=28.0334728033473, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI4505771, Length=239, Percent_Identity=28.0334728033473, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI9961252, Length=239, Percent_Identity=28.0334728033473, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI255708477, Length=227, Percent_Identity=27.7533039647577, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI42741659, Length=220, Percent_Identity=26.8181818181818, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI148612844, Length=227, Percent_Identity=27.7533039647577, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI1789963, Length=326, Percent_Identity=87.1165644171779, Blast_Score=584, Evalue=1e-168, Organism=Escherichia coli, GI48994883, Length=319, Percent_Identity=44.8275862068966, Blast_Score=288, Evalue=3e-79, Organism=Escherichia coli, GI1787548, Length=327, Percent_Identity=43.4250764525994, Blast_Score=270, Evalue=1e-73, Organism=Escherichia coli, GI1787759, Length=297, Percent_Identity=45.4545454545455, Blast_Score=266, Evalue=2e-72, Organism=Escherichia coli, GI145693107, Length=264, Percent_Identity=49.6212121212121, Blast_Score=259, Evalue=1e-70, Organism=Escherichia coli, GI1788506, Length=258, Percent_Identity=46.5116279069767, Blast_Score=230, Evalue=1e-61, Organism=Escherichia coli, GI1787500, Length=326, Percent_Identity=37.7300613496933, Blast_Score=213, Evalue=2e-56, Organism=Escherichia coli, GI1789962, Length=295, Percent_Identity=36.271186440678, Blast_Score=199, Evalue=2e-52, Organism=Escherichia coli, GI1787758, Length=308, Percent_Identity=36.038961038961, Blast_Score=185, Evalue=3e-48, Organism=Escherichia coli, GI48994997, Length=257, Percent_Identity=36.5758754863813, Blast_Score=148, Evalue=4e-37, Organism=Escherichia coli, GI1789890, Length=247, Percent_Identity=35.2226720647773, Blast_Score=141, Evalue=5e-35, Organism=Escherichia coli, GI1787547, Length=261, Percent_Identity=32.5670498084291, Blast_Score=135, Evalue=3e-33, Organism=Escherichia coli, GI1789891, Length=245, Percent_Identity=35.5102040816327, Blast_Score=127, Evalue=1e-30, Organism=Escherichia coli, GI1789032, Length=231, Percent_Identity=34.6320346320346, Blast_Score=121, Evalue=6e-29, Organism=Escherichia coli, GI1788225, Length=237, Percent_Identity=33.7552742616034, Blast_Score=112, Evalue=2e-26, Organism=Escherichia coli, GI1786398, Length=260, Percent_Identity=30, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1787029, Length=254, Percent_Identity=31.1023622047244, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1789672, Length=258, Percent_Identity=29.0697674418605, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1786703, Length=218, Percent_Identity=33.0275229357798, Blast_Score=96, Evalue=4e-21, Organism=Escherichia coli, GI87081834, Length=226, Percent_Identity=31.4159292035398, Blast_Score=94, Evalue=2e-20, Organism=Escherichia coli, GI1787089, Length=219, Percent_Identity=32.4200913242009, Blast_Score=93, Evalue=3e-20, Organism=Escherichia coli, GI1788644, Length=180, Percent_Identity=30, Blast_Score=92, Evalue=6e-20, Organism=Escherichia coli, GI1788761, Length=257, Percent_Identity=28.0155642023346, Blast_Score=91, Evalue=9e-20, Organism=Escherichia coli, GI1790162, Length=253, Percent_Identity=26.0869565217391, Blast_Score=89, Evalue=5e-19, Organism=Escherichia coli, GI1789873, Length=216, Percent_Identity=30.0925925925926, Blast_Score=89, Evalue=5e-19, Organism=Escherichia coli, GI1787712, Length=284, Percent_Identity=27.4647887323944, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI87081791, Length=239, Percent_Identity=30.1255230125523, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787370, Length=238, Percent_Identity=27.7310924369748, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI1787105, Length=210, Percent_Identity=32.3809523809524, Blast_Score=83, Evalue=3e-17, Organism=Escherichia coli, GI1786872, Length=226, Percent_Identity=29.2035398230088, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI1786563, Length=232, Percent_Identity=28.8793103448276, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1788450, Length=229, Percent_Identity=26.2008733624454, Blast_Score=79, Evalue=6e-16, Organism=Escherichia coli, GI87081709, Length=252, Percent_Identity=23.4126984126984, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1787792, Length=222, Percent_Identity=27.9279279279279, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1786253, Length=223, Percent_Identity=27.8026905829596, Blast_Score=75, Evalue=7e-15, Organism=Escherichia coli, GI1786319, Length=236, Percent_Identity=27.9661016949153, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI1790467, Length=232, Percent_Identity=28.448275862069, Blast_Score=73, Evalue=3e-14, Organism=Escherichia coli, GI48994943, Length=269, Percent_Identity=26.7657992565056, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI87082267, Length=231, Percent_Identity=27.7056277056277, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1789991, Length=219, Percent_Identity=24.2009132420091, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1786803, Length=247, Percent_Identity=26.3157894736842, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI1786345, Length=222, Percent_Identity=28.3783783783784, Blast_Score=68, Evalue=9e-13, Organism=Escherichia coli, GI1787164, Length=229, Percent_Identity=27.5109170305677, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1786698, Length=219, Percent_Identity=27.3972602739726, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1788002, Length=253, Percent_Identity=25.6916996047431, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1788053, Length=202, Percent_Identity=27.7227722772277, Blast_Score=63, Evalue=3e-11, Organism=Escherichia coli, GI1790525, Length=234, Percent_Identity=26.4957264957265, Blast_Score=63, Evalue=3e-11, Organism=Escherichia coli, GI48995001, Length=226, Percent_Identity=25.2212389380531, Blast_Score=63, Evalue=3e-11, Organism=Escherichia coli, GI1786654, Length=241, Percent_Identity=26.9709543568465, Blast_Score=62, Evalue=4e-11, Organism=Caenorhabditis elegans, GI212646699, Length=222, Percent_Identity=31.5315315315315, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI193209708, Length=233, Percent_Identity=28.755364806867, Blast_Score=77, Evalue=8e-15, Organism=Caenorhabditis elegans, GI193208177, Length=230, Percent_Identity=28.695652173913, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI25146777, Length=250, Percent_Identity=28.8, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI115534520, Length=236, Percent_Identity=27.1186440677966, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI193202349, Length=235, Percent_Identity=27.2340425531915, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI71983523, Length=251, Percent_Identity=23.1075697211155, Blast_Score=64, Evalue=1e-10, Organism=Caenorhabditis elegans, GI71983516, Length=251, Percent_Identity=23.1075697211155, Blast_Score=64, Evalue=1e-10, Organism=Caenorhabditis elegans, GI71983510, Length=251, Percent_Identity=23.1075697211155, Blast_Score=64, Evalue=1e-10, Organism=Saccharomyces cerevisiae, GI6324985, Length=252, Percent_Identity=26.984126984127, Blast_Score=67, Evalue=3e-12, Organism=Drosophila melanogaster, GI28574150, Length=214, Percent_Identity=24.7663551401869, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI116007328, Length=214, Percent_Identity=24.7663551401869, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24641565, Length=216, Percent_Identity=31.0185185185185, Blast_Score=65, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 35734; Mature: 35603
Theoretical pI: Translated: 7.56; Mature: 7.56
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALLDVDQLSVHFGNDSAPFRAVDRISYQVEQGEVVGIVGESGSGKSVSSLAVMGLIDFP CCEECCCCEEEEECCCCCCHHHHHHHHEEECCCCEEEEEECCCCCCCHHHHHEEHHHCCC GRVMAQRLSFNGADLQRISERERRQLVGAEVAMIFQDPMTSLNPCYTVGFQIMEALKVHQ HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHC GGNRRTRRQRAIDLLTQVGIPDPASRLSVYPHQLSGGMSQRMMIAMAIACRPKLLIADEP CCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHCCCHHHHHHHHHHHHCCCEEEEECCC TTALDVTIQAQIIELLLALQQRENMALVLITHDLALVAEAAHKIIVMYAGQVVESGLAGE CCEEEEEHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHEEEEEHHHHHHCCCCCC IFHTPRHPYTQALLRALPEFAVDGERLVSLPGVVPGKYDRPTGCLLNPRCPYATEQCRRE HHCCCCCHHHHHHHHHHHHHHCCCHHEEECCCCCCCCCCCCCCCEECCCCCCHHHHHHCC EPSLRRLHGRAVKCHTPLDDAGRPTA CCHHHHHCCCEEEECCCCCCCCCCCC >Mature Secondary Structure ALLDVDQLSVHFGNDSAPFRAVDRISYQVEQGEVVGIVGESGSGKSVSSLAVMGLIDFP CEECCCCEEEEECCCCCCHHHHHHHHEEECCCCEEEEEECCCCCCCHHHHHEEHHHCCC GRVMAQRLSFNGADLQRISERERRQLVGAEVAMIFQDPMTSLNPCYTVGFQIMEALKVHQ HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHC GGNRRTRRQRAIDLLTQVGIPDPASRLSVYPHQLSGGMSQRMMIAMAIACRPKLLIADEP CCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHCCCHHHHHHHHHHHHCCCEEEEECCC TTALDVTIQAQIIELLLALQQRENMALVLITHDLALVAEAAHKIIVMYAGQVVESGLAGE CCEEEEEHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHEEEEEHHHHHHCCCCCC IFHTPRHPYTQALLRALPEFAVDGERLVSLPGVVPGKYDRPTGCLLNPRCPYATEQCRRE HHCCCCCHHHHHHHHHHHHHHCCCHHEEECCCCCCCCCCCCCCCEECCCCCCHHHHHHCC EPSLRRLHGRAVKCHTPLDDAGRPTA CCHHHHHCCCEEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]