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The map label for this gene is ygeV [H]

Identifier: 238921390

GI number: 238921390

Start: 3434009

End: 3435763

Strand: Direct

Name: ygeV [H]

Synonym: NT01EI_3534

Alternate gene names: 238921390

Gene position: 3434009-3435763 (Clockwise)

Preceding gene: 238921384

Following gene: 238921393

Centisome position: 90.08

GC content: 54.53

Gene sequence:

>1755_bases
ATGCAGATCCAACCCACTATCCTGCGCTTTACCAAAATGCTCTCCAGCGTACTGCAACTGGAAGTCGAGATCGTCGATGC
CACTATGACGCGCGTCGCCGGCACCGGCCCCTATGGTAAGTTCTTTGGCCGCAAGCTCAACAGCAACTCACGTCTGCTGC
GCTATGTGCTAGATACCAAGCAAGAAAAGGTGGTGATCCGCTCCCGCTTCGATCCGGTCTGCGAGGGATGCAACAGTAAG
GATAACTGTAAGGAAAAGGCCTTTCTCGGAACGCCGATCCTGTTCCAGGGTAACTGCATCGGCGTTATCAGCCTGGTGGC
CTTTACCCAGGAGCAGCAGGCGCGAATAAAGGATAACCTACATGAGTTCTCAGATTATGTTAGGCATATATCCAACATAT
TTGTTTCTAAACTCTTGGAAAGCCAGGGTGGCAACGATGGCGTCAGCAAAATACTACTCAGCTTAATCGAGAGTATGGAT
CAGGGCGTATTGGTCCTGGATGAAAATAACCAGGCACAGTTTGCCAATGCCACTGCATTAAAACAGCTGAATGCAATTAA
TGAGCAAGTTATTGGTAAGGCATTTAATATTCGGCCGCTGACCTATCAGCAGAACTATCTCAGCGGTCACCTGCAGCATA
TTGTCTCTTTCGATAGCCATCAGGAACTAATTATCGGCCAGCTGCATGATATTCAGGACCACCAGCTATTTTTGATGGCG
TTCCATCAGTCCCACTCACCGATGAACGTCGAACTGAATCCTGATGATCCACGTATCGAACACTTGGTCGGAGAGTGCCG
CCCGATGCGTAACCTGAAGCGGCTGATCAGCCGCATCGCGCCCAGCCCGTCGAGCGTACTGATTATGGGCGAGAGCGGCA
CCGGTAAAGAGGTGGTGGCACGCGCTATCCACCAGCTCAGCGATCGCAATAACAAGCCGTTTATCGCTATCAACTGCGCC
GCCATTCCGGATCAGCTGCTGGAGAGCGAGCTATTCGGCTATGTGAAGGGCGCCTTCACCGGCGCCTCTGCCAACGGCAA
AATGGGGCTGATCCAGGCCGCCAACCACGGAACGCTGTTTCTGGACGAAATCGGCGACATGCCGCTGACCCTACAGGCCA
AACTGCTGCGTGCCATCGAGTCGCGAGAGGTTCAGCCCATCGGTTCCAGCAGCCCCATCGCCGTCGATATCCGCATTATC
TCCGCCACCAATCAGAACCTGAAGCAGTACATCGCCGATGGTAAATTTCGCGAAGACCTCTACTACCGCCTGAATGTGAT
CCCGATGGCCCTACCGCCGTTACGCGAGCGGCAGGGCGACATCGAACTCCTGATCCACTACTTTCTTAATCTGCACACCA
AGCGCATCGGTCTGGTCTATCCCGGCATTTCGCCAGAGATCATGATGCTGCTCAAGCGCTATCGCTGGCCGGGCAACGTA
CGCGAGCTGAGTAACCTGATGGAGTACCTAATCAACGTCGTGCCCAGCGGCGAGGTGATCGACACCGCACTGCTGCCGCC
CAACCTGATCAACGGGCAGGTCACCCTGAACTATCGGGAGGATAACAGCACCTATCAGAGCAGCATAGCCTGCAGCGATG
ATCACGGCAGCACGGCGCTGGAGGAGATGGAAAAGCAGATGATCCGCGAGGCGCTGGCGCGCTACAGCAACAAGAAGCAG
GCGGCGGAGGAGCTGGGTATCGGTATTGCCACCCTCTACCGCAAGATAAAGAAGTACGAGCTAACGGCAGGTTGA

Upstream 100 bases:

>100_bases
TAGGTTCTAACATCAGCCAACATACCCGTAATGCAGGGTAACTGGTTAAGTGCTAAAGAAAGGTTCAATTATGACACCCG
CAAACACTCAATCCGTTTTA

Downstream 100 bases:

>100_bases
TACACCGGGCGGCCCGTTTACCCGGTCACCTAGCCGTGTACCCAGAACAGACCGACGACAAACAGACAGAATAGCAGCGG
CAACGCCAACACCGGCAGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 584; Mature: 584

Protein sequence:

>584_residues
MQIQPTILRFTKMLSSVLQLEVEIVDATMTRVAGTGPYGKFFGRKLNSNSRLLRYVLDTKQEKVVIRSRFDPVCEGCNSK
DNCKEKAFLGTPILFQGNCIGVISLVAFTQEQQARIKDNLHEFSDYVRHISNIFVSKLLESQGGNDGVSKILLSLIESMD
QGVLVLDENNQAQFANATALKQLNAINEQVIGKAFNIRPLTYQQNYLSGHLQHIVSFDSHQELIIGQLHDIQDHQLFLMA
FHQSHSPMNVELNPDDPRIEHLVGECRPMRNLKRLISRIAPSPSSVLIMGESGTGKEVVARAIHQLSDRNNKPFIAINCA
AIPDQLLESELFGYVKGAFTGASANGKMGLIQAANHGTLFLDEIGDMPLTLQAKLLRAIESREVQPIGSSSPIAVDIRII
SATNQNLKQYIADGKFREDLYYRLNVIPMALPPLRERQGDIELLIHYFLNLHTKRIGLVYPGISPEIMMLLKRYRWPGNV
RELSNLMEYLINVVPSGEVIDTALLPPNLINGQVTLNYREDNSTYQSSIACSDDHGSTALEEMEKQMIREALARYSNKKQ
AAEELGIGIATLYRKIKKYELTAG

Sequences:

>Translated_584_residues
MQIQPTILRFTKMLSSVLQLEVEIVDATMTRVAGTGPYGKFFGRKLNSNSRLLRYVLDTKQEKVVIRSRFDPVCEGCNSK
DNCKEKAFLGTPILFQGNCIGVISLVAFTQEQQARIKDNLHEFSDYVRHISNIFVSKLLESQGGNDGVSKILLSLIESMD
QGVLVLDENNQAQFANATALKQLNAINEQVIGKAFNIRPLTYQQNYLSGHLQHIVSFDSHQELIIGQLHDIQDHQLFLMA
FHQSHSPMNVELNPDDPRIEHLVGECRPMRNLKRLISRIAPSPSSVLIMGESGTGKEVVARAIHQLSDRNNKPFIAINCA
AIPDQLLESELFGYVKGAFTGASANGKMGLIQAANHGTLFLDEIGDMPLTLQAKLLRAIESREVQPIGSSSPIAVDIRII
SATNQNLKQYIADGKFREDLYYRLNVIPMALPPLRERQGDIELLIHYFLNLHTKRIGLVYPGISPEIMMLLKRYRWPGNV
RELSNLMEYLINVVPSGEVIDTALLPPNLINGQVTLNYREDNSTYQSSIACSDDHGSTALEEMEKQMIREALARYSNKKQ
AAEELGIGIATLYRKIKKYELTAG
>Mature_584_residues
MQIQPTILRFTKMLSSVLQLEVEIVDATMTRVAGTGPYGKFFGRKLNSNSRLLRYVLDTKQEKVVIRSRFDPVCEGCNSK
DNCKEKAFLGTPILFQGNCIGVISLVAFTQEQQARIKDNLHEFSDYVRHISNIFVSKLLESQGGNDGVSKILLSLIESMD
QGVLVLDENNQAQFANATALKQLNAINEQVIGKAFNIRPLTYQQNYLSGHLQHIVSFDSHQELIIGQLHDIQDHQLFLMA
FHQSHSPMNVELNPDDPRIEHLVGECRPMRNLKRLISRIAPSPSSVLIMGESGTGKEVVARAIHQLSDRNNKPFIAINCA
AIPDQLLESELFGYVKGAFTGASANGKMGLIQAANHGTLFLDEIGDMPLTLQAKLLRAIESREVQPIGSSSPIAVDIRII
SATNQNLKQYIADGKFREDLYYRLNVIPMALPPLRERQGDIELLIHYFLNLHTKRIGLVYPGISPEIMMLLKRYRWPGNV
RELSNLMEYLINVVPSGEVIDTALLPPNLINGQVTLNYREDNSTYQSSIACSDDHGSTALEEMEKQMIREALARYSNKKQ
AAEELGIGIATLYRKIKKYELTAG

Specific function: Unknown

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1789233, Length=581, Percent_Identity=72.4612736660929, Blast_Score=888, Evalue=0.0,
Organism=Escherichia coli, GI1790299, Length=349, Percent_Identity=42.9799426934097, Blast_Score=258, Evalue=5e-70,
Organism=Escherichia coli, GI1788550, Length=320, Percent_Identity=45.625, Blast_Score=254, Evalue=1e-68,
Organism=Escherichia coli, GI1790437, Length=318, Percent_Identity=44.3396226415094, Blast_Score=249, Evalue=4e-67,
Organism=Escherichia coli, GI87082117, Length=324, Percent_Identity=43.2098765432099, Blast_Score=244, Evalue=8e-66,
Organism=Escherichia coli, GI1789087, Length=332, Percent_Identity=40.9638554216867, Blast_Score=242, Evalue=4e-65,
Organism=Escherichia coli, GI1788905, Length=227, Percent_Identity=53.7444933920705, Blast_Score=237, Evalue=2e-63,
Organism=Escherichia coli, GI87082152, Length=323, Percent_Identity=39.6284829721362, Blast_Score=221, Evalue=1e-58,
Organism=Escherichia coli, GI1786524, Length=333, Percent_Identity=38.1381381381381, Blast_Score=216, Evalue=4e-57,
Organism=Escherichia coli, GI87081872, Length=230, Percent_Identity=44.7826086956522, Blast_Score=198, Evalue=6e-52,
Organism=Escherichia coli, GI1787583, Length=330, Percent_Identity=33.3333333333333, Blast_Score=190, Evalue=2e-49,
Organism=Escherichia coli, GI87081858, Length=512, Percent_Identity=29.296875, Blast_Score=161, Evalue=1e-40,
Organism=Escherichia coli, GI1789828, Length=241, Percent_Identity=37.344398340249, Blast_Score=152, Evalue=7e-38,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003018
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR000014
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 65415; Mature: 65415

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIQPTILRFTKMLSSVLQLEVEIVDATMTRVAGTGPYGKFFGRKLNSNSRLLRYVLDTK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHCCC
QEKVVIRSRFDPVCEGCNSKDNCKEKAFLGTPILFQGNCIGVISLVAFTQEQQARIKDNL
CCEEHHHHCCCHHHCCCCCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHH
HEFSDYVRHISNIFVSKLLESQGGNDGVSKILLSLIESMDQGVLVLDENNQAQFANATAL
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH
KQLNAINEQVIGKAFNIRPLTYQQNYLSGHLQHIVSFDSHQELIIGQLHDIQDHQLFLMA
HHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEEEEE
FHQSHSPMNVELNPDDPRIEHLVGECRPMRNLKRLISRIAPSPSSVLIMGESGTGKEVVA
ECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHH
RAIHQLSDRNNKPFIAINCAAIPDQLLESELFGYVKGAFTGASANGKMGLIQAANHGTLF
HHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEE
LDEIGDMPLTLQAKLLRAIESREVQPIGSSSPIAVDIRIISATNQNLKQYIADGKFREDL
EHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHCCCHHHHH
YYRLNVIPMALPPLRERQGDIELLIHYFLNLHTKRIGLVYPGISPEIMMLLKRYRWPGNV
HEEEEEEEECCCCHHHCCCCHHHHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHCCCCCH
RELSNLMEYLINVVPSGEVIDTALLPPNLINGQVTLNYREDNSTYQSSIACSDDHGSTAL
HHHHHHHHHHHHHCCCCCEEEHCCCCCCCCCCEEEEEEECCCCCHHCCEEECCCCCCHHH
EEMEKQMIREALARYSNKKQAAEELGIGIATLYRKIKKYELTAG
HHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQIQPTILRFTKMLSSVLQLEVEIVDATMTRVAGTGPYGKFFGRKLNSNSRLLRYVLDTK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHCCC
QEKVVIRSRFDPVCEGCNSKDNCKEKAFLGTPILFQGNCIGVISLVAFTQEQQARIKDNL
CCEEHHHHCCCHHHCCCCCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHH
HEFSDYVRHISNIFVSKLLESQGGNDGVSKILLSLIESMDQGVLVLDENNQAQFANATAL
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH
KQLNAINEQVIGKAFNIRPLTYQQNYLSGHLQHIVSFDSHQELIIGQLHDIQDHQLFLMA
HHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEEEEE
FHQSHSPMNVELNPDDPRIEHLVGECRPMRNLKRLISRIAPSPSSVLIMGESGTGKEVVA
ECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHH
RAIHQLSDRNNKPFIAINCAAIPDQLLESELFGYVKGAFTGASANGKMGLIQAANHGTLF
HHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEE
LDEIGDMPLTLQAKLLRAIESREVQPIGSSSPIAVDIRIISATNQNLKQYIADGKFREDL
EHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHCCCHHHHH
YYRLNVIPMALPPLRERQGDIELLIHYFLNLHTKRIGLVYPGISPEIMMLLKRYRWPGNV
HEEEEEEEECCCCHHHCCCCHHHHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHCCCCCH
RELSNLMEYLINVVPSGEVIDTALLPPNLINGQVTLNYREDNSTYQSSIACSDDHGSTAL
HHHHHHHHHHHHHCCCCCEEEHCCCCCCCCCCEEEEEEECCCCCHHCCEEECCCCCCHHH
EEMEKQMIREALARYSNKKQAAEELGIGIATLYRKIKKYELTAG
HHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]