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The map label for this gene is holC [H]

Identifier: 238921312

GI number: 238921312

Start: 3346811

End: 3347260

Strand: Direct

Name: holC [H]

Synonym: NT01EI_3456

Alternate gene names: 238921312

Gene position: 3346811-3347260 (Clockwise)

Preceding gene: 238921311

Following gene: 238921313

Centisome position: 87.79

GC content: 63.78

Gene sequence:

>450_bases
ATGAAACAGGCAACCTTTTATTTACTGGAGCAGCCCCAGGAGGCTGACACGCCGGACGATGTGGAAACGCTGGCCTGCGA
TCTGGCCTGCCAGCACTGGCGCGCCGGTAAACGGGTGCTGTTGGCCTGCGCCAGCCAGGAGCAGGCACTGCGCCTGGACG
AGGCGCTATGGGCGCGCGACCCGCAGCAGTTCGTGCCGCACAGCCTGGCCGGTGAGGGGCCGCGCTTCGGCGCGCCGGTG
GAGCTCTCCTGGCCGGGCAAGCGCGGCAGCGCGCCACGCGAGCTGTTAATCTGCCTGCTGCCGACGTTCGCGGATTTTGC
CACCGCTTTCCATGAAGTGATAGACTTCGTGCCTTATGAAGACGTATTAAAGCAGTTGGCGCGCGAACGCTATAAAGCCT
ATCGCAGCGTCGGCTTTCACTTGACCACGGCGACGCCGCCAACTCACTGA

Upstream 100 bases:

>100_bases
TGTAGAATAGAGGGGATGGCCGTCCGCCGCGCGGGCGGCCGCGCCGTATCGCTGATCCCGGCAACAGGGCATTCACCTAG
CAGGATAGATCCGACTCCCA

Downstream 100 bases:

>100_bases
CCGATCAGACGAAACAGACGAAGAATGGAAAAAACATACAACCCGCAAGATATCGAACAGCCGCTGTATGCGCACTGGGA
ACAGCAGGGCTACTTTAAGC

Product: DNA polymerase III subunit chi

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MKQATFYLLEQPQEADTPDDVETLACDLACQHWRAGKRVLLACASQEQALRLDEALWARDPQQFVPHSLAGEGPRFGAPV
ELSWPGKRGSAPRELLICLLPTFADFATAFHEVIDFVPYEDVLKQLARERYKAYRSVGFHLTTATPPTH

Sequences:

>Translated_149_residues
MKQATFYLLEQPQEADTPDDVETLACDLACQHWRAGKRVLLACASQEQALRLDEALWARDPQQFVPHSLAGEGPRFGAPV
ELSWPGKRGSAPRELLICLLPTFADFATAFHEVIDFVPYEDVLKQLARERYKAYRSVGFHLTTATPPTH
>Mature_149_residues
MKQATFYLLEQPQEADTPDDVETLACDLACQHWRAGKRVLLACASQEQALRLDEALWARDPQQFVPHSLAGEGPRFGAPV
ELSWPGKRGSAPRELLICLLPTFADFATAFHEVIDFVPYEDVLKQLARERYKAYRSVGFHLTTATPPTH

Specific function: DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity [H]

COG id: COG2927

COG function: function code L; DNA polymerase III, chi subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790709, Length=145, Percent_Identity=65.5172413793103, Blast_Score=202, Evalue=6e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007459 [H]

Pfam domain/function: PF04364 DNA_pol3_chi [H]

EC number: =2.7.7.7 [H]

Molecular weight: Translated: 16765; Mature: 16765

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQATFYLLEQPQEADTPDDVETLACDLACQHWRAGKRVLLACASQEQALRLDEALWARD
CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHEEEEECCCHHHHHHHHHHHCCC
PQQFVPHSLAGEGPRFGAPVELSWPGKRGSAPRELLICLLPTFADFATAFHEVIDFVPYE
CHHHCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
DVLKQLARERYKAYRSVGFHLTTATPPTH
HHHHHHHHHHHHHHHHCCCEEECCCCCCC
>Mature Secondary Structure
MKQATFYLLEQPQEADTPDDVETLACDLACQHWRAGKRVLLACASQEQALRLDEALWARD
CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHEEEEECCCHHHHHHHHHHHCCC
PQQFVPHSLAGEGPRFGAPVELSWPGKRGSAPRELLICLLPTFADFATAFHEVIDFVPYE
CHHHCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
DVLKQLARERYKAYRSVGFHLTTATPPTH
HHHHHHHHHHHHHHHHCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8389364; 8246893; 7610040; 9278503; 2670557; 8505305; 1575709 [H]