Definition Edwardsiella ictaluri 93-146 chromosome, complete genome.
Accession NC_012779
Length 3,812,315

Click here to switch to the map view.

The map label for this gene is 238921284

Identifier: 238921284

GI number: 238921284

Start: 3311939

End: 3312358

Strand: Direct

Name: 238921284

Synonym: NT01EI_3427

Alternate gene names: NA

Gene position: 3311939-3312358 (Clockwise)

Preceding gene: 238921278

Following gene: 238921289

Centisome position: 86.87

GC content: 57.86

Gene sequence:

>420_bases
ATGTCCAAATCACAGGCTGCCATTCTGGTTGAGCGTATTAAGGATGCGCTGAAGGGCAATAAACTGCAGACCAGCGAAAT
CAACGTCCACCTGGTGGAAGACAGCTCCTTTGGCCCGGTCAAGATCGTCATGTTCCTGTGGAGCGTGGCGGACAACGATA
TTAACGCCGACATCATCGCCCAGGAGGTGCTGTTTCACCTGAAAGACGACGATATCTATGTCTCATTCCATAAGACCCGC
CGCCGCGACGGCGAACGTCTGCTGACCGTCACCCAGCCGCTGGAGCCGAACAACCCCAAATACAGCTACGGTAATCTGCG
CGGTTTTACCTCGCTGTGGCTGATCCAGGCCACCGGCGCCGAAAAGCTCAAGCAGGCCCGCGACGGCCAGGGCAACGACG
GTCGCATCGTCCGCCGCTGA

Upstream 100 bases:

>100_bases
AAATCATCGATAAAAAAGCCGATAAAATAATCATGTATCGCCGTGGGGCGGGCGGATCCCCGCCCAGGCCCGGCCATTTT
CACCATTTAAGGAAACGACC

Downstream 100 bases:

>100_bases
GCAATAGCCTTACTTCCCCGAGCCCGGCACGGAAAAATCGTAGCGGACCAGCACCGCCTTGCTCTGTCCATTTTCGTCCG
TCTCCGCAATCCCCAGCCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 138

Protein sequence:

>139_residues
MSKSQAAILVERIKDALKGNKLQTSEINVHLVEDSSFGPVKIVMFLWSVADNDINADIIAQEVLFHLKDDDIYVSFHKTR
RRDGERLLTVTQPLEPNNPKYSYGNLRGFTSLWLIQATGAEKLKQARDGQGNDGRIVRR

Sequences:

>Translated_139_residues
MSKSQAAILVERIKDALKGNKLQTSEINVHLVEDSSFGPVKIVMFLWSVADNDINADIIAQEVLFHLKDDDIYVSFHKTR
RRDGERLLTVTQPLEPNNPKYSYGNLRGFTSLWLIQATGAEKLKQARDGQGNDGRIVRR
>Mature_138_residues
SKSQAAILVERIKDALKGNKLQTSEINVHLVEDSSFGPVKIVMFLWSVADNDINADIIAQEVLFHLKDDDIYVSFHKTRR
RDGERLLTVTQPLEPNNPKYSYGNLRGFTSLWLIQATGAEKLKQARDGQGNDGRIVRR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15752; Mature: 15621

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKSQAAILVERIKDALKGNKLQTSEINVHLVEDSSFGPVKIVMFLWSVADNDINADIIA
CCCCHHHHHHHHHHHHHCCCCEEECEEEEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHH
QEVLFHLKDDDIYVSFHKTRRRDGERLLTVTQPLEPNNPKYSYGNLRGFTSLWLIQATGA
HHHHHCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCH
EKLKQARDGQGNDGRIVRR
HHHHHHHCCCCCCCEEEEC
>Mature Secondary Structure 
SKSQAAILVERIKDALKGNKLQTSEINVHLVEDSSFGPVKIVMFLWSVADNDINADIIA
CCCHHHHHHHHHHHHHCCCCEEECEEEEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHH
QEVLFHLKDDDIYVSFHKTRRRDGERLLTVTQPLEPNNPKYSYGNLRGFTSLWLIQATGA
HHHHHCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCH
EKLKQARDGQGNDGRIVRR
HHHHHHHCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA