| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238921168
Identifier: 238921168
GI number: 238921168
Start: 3192129
End: 3194105
Strand: Reverse
Name: 238921168
Synonym: NT01EI_3309
Alternate gene names: NA
Gene position: 3194105-3192129 (Counterclockwise)
Preceding gene: 238921169
Following gene: 238921167
Centisome position: 83.78
GC content: 59.94
Gene sequence:
>1977_bases ATGGTATTTGAAAAAGGCAACAGCCGCTATGCCACGGATACCACGGTGAGCGCGGGCAACACCCTGACGCTGAACAGCGG TAATGACACCACCCTGAAGGGGGCGCAGGTACAGGGGGAGAACGTGGTGGCGAATGTCGGCAATAATCTGACCCTACGCA GTGAGCAGGCGGTTGATAGCTATGAGGCCAAGCAATCCAGCTTCAGCGCCGGGGGGAGCATCGGCTTCGGCAATGGCTCT CTGGGTATCGCCGCCAGCCGCGATAAGATGCACAGCGACTATGCCTCGGTGGAGAGCCAGAGCGGCATCTTTGCCGGTAC CGGTGGCTTTGATATCACCGTGGGTAATCATACCCAGCTGGACGGCGCGGCCATTGCCAGCGCGGCCGGTCAGGAGAACA ACCGCTTAGATAGCGGAACCCTGGGCTTTGCCGATATCGACAACCGCGCTGAGTTCAAGGCGCAGCACCAGGGGTTTGGC CTTAGCTCCGGCGGTAGCATTGGCGGCCAGTTCGCGGGCAATATGGCCAATAGCCTGTTGGCGGGCGCCAATCAGAATGA GCGCGCCCGCGGCACCACCCAGTCGGCTATCGCCGACGGCGCGATCGTCGTGCGCGATCGCGCCAACCAGCAGCAGGATG TCGCCGGGTTAGCGCGCGACACGGAGCGGGCGCACCAGCCCCTCACCCCTATCTTCGACAAGGAGAAAGCGCAGCGGCGC CTGCAGCAGGCCCGGCTGATCGGTGAGATTGGCAATCAGGTGGCCGATATTGCACGGACAGAGGGCGAGATCGCCGGGGA AAAAGCCCGGCGTGACCCGACGGCCCTGAATCAGGCGCGTACCGCACTGGAAGCCAGCGGTAAACCGTTTACCGAGAAGG ATGTAGCGCAGCGGGCGTATAACACCGGCATGCGCGATTCCGGGTTTGGCACCGGAGGGCAATACCAGCAGGCGATTCAG GCGGCCACGGCGGCGGTACAGGGGCTGGCGGGCGGCAACCTGCAGGCGGCGCTGGCGGGCGGCGCGGCGCCGTATATTAG TGAGATAATCAAGCAGAGCACCCCGGACGGCGCGGGGCGTGTGGCGGCCCATGCGGTGGTAAACGCGGCGCTGGCCGCAG CACAGGGGAATAACGCCCTTGCCGGAGCCGCGGGTGCGGCCACCGGCGAAATCGTCGGCATGCTGGCCACGGAGATATAC CAGAAACCGGTCGCTGAGCTCAGCGAAAGCGAGAAACAGACCGTTTCAACACTGGCCACCGTTGCCGCCGGACTGGCCGG CGGTCTGGTGGGCGACGCGGGGGCCTCTGCACTCGCCGGCGCACAGTCGGGTAAGACGACGGTGGAGAATAACCTTCTTG GCGGTAGTGAGTGGCTTCAGACCGATAAAGCCAGGGAGCACGCTGCGGATGTTCTCTCCTGTCATGATAATCCGTCGGGA GAGGCCTGCAGGCGAGGACTGGCCGAAAACAAAGCCTATGCCGCCGCATTAGCGGCAGGTAGTGTTGCACTGTTACCCGG TAGTGCCCAGGCGATGTGGGGACTTGGTGCTGGGGCGAATGCAGGGATTGGCTATATAGTTGATGGCTCGGTTGATCCTG AAAATGCAATCATTGCAGGATGGGTGAACGTAATCACCATGGGACAGGGCTGGAAAGAAACCGTGGGCTGGAATGCCGCA GGTGGTGCATTTGGTAACTGGATAGATGATAAAGATCCTCTAACTGGAGCAATTATAAATGGTAGTTCATCAGCGATAGG ATATGGAGTAGGGAAAATGATCCAAGGGCCATTAGAAAAGATAATTAACCCTAACTGGAAAAACTGGGAGTGGACTGACA TAGGAATGGGAGTCAGTAAGCCCTTACCACTAAATCCAGTTCCTGGTATCGCTGGGAATATAGGTTCTTCAATCGCTTCA GAAGGCTCGGGAGCTATTATTCAGGAGCAGCTAAAAAACCAGCAGGAGGGTAAGTGA
Upstream 100 bases:
>100_bases CCCAGACTGAAATTAACAACAATCCCAGTCTTTTTCAACTGGGGTTGTTGTGAAGAATAATTTACTCGGCGACGGATTTA AGCTGCCGTACTGACGGATT
Downstream 100 bases:
>100_bases TGAGACATCAATCTCTCCTTCTGCGATTTTTAATGACCTTGCTCATATGGTTTTTTGCCATATTTATTATGGCAGTAGTG ATATTATTCTTCATGAGATT
Product: hypothetical protein
Products: NA
Alternate protein names: Filamentous Haemagglutinin Outer Membrane Protein; Hemagglutinin-Related Protein; Filamentous Hemagglutinin; Hemolysin; Hemagglutinin/Hemolysin-Related Protein; Filamentous Haemagglutinin; Adhesin/Hemagglutinin; Adhesin; Adhesin/Hemolysin; Large Exoprotein Involved In Heme Utilization Or Adhesion; ShlA/HecA/FhaA Exofamily Protein; Cell Surface Protein; Adhesin HecA Family; Hemagglutinin; Adhesin/Hemagglutinin/Hemolysin; Hemagglutinin-Like Secreted Protein; Hemolysin/Hemagglutinin-Like Protein; Contact-Dependent Inhibitor A; FhaB Protein; Adhesin/Haemagluttinin; Filamentous Hemagglutinin/Adhesin; Filamentous Haemagglutinin Family Protein; Filamentous Haemagglutinin N-TerminalAdhesin HecA; Filamentous Haemagglutinin Family Outer Membrane Protein; Contact-Dependent Inhibition Of Growth Factor CdiA; Exoprotein Adhesin Or Hemolysin; Surface Adhesin; Filamentous Haemagglutinin Adhesin HecA; Member Of ShlA/HecA/FhaA Exoprotein Family; Filamentous Hemagglutinin Outer Membrane Protein; Haemolysin-Like Protein; Hemolysin/Hemagglutinin-Like Protein HecA; Haemolysin/Haemagglutinin; AT-2 Family Transporter; Cell Surface Haemagluttinin Protein; Adhesin/Hemolysin Adhesin HecA; Filamentous Hemagglutinin Protein; Filamentous Hemagglutinin / Adhesin; Hemagglutinin/Adhesin Repeat-Containing Protein; Hemagglutinin/Hemolysin Family Protein; Hemagglutinin-Like Protein; Hemagglutinin/Hemolysin- Related Exoprotein; Haemagglutinin/Haemolysin-Related Protein; Hemagglutination Activity Domain Protein; Fimbrial Adhesin
Number of amino acids: Translated: 658; Mature: 658
Protein sequence:
>658_residues MVFEKGNSRYATDTTVSAGNTLTLNSGNDTTLKGAQVQGENVVANVGNNLTLRSEQAVDSYEAKQSSFSAGGSIGFGNGS LGIAASRDKMHSDYASVESQSGIFAGTGGFDITVGNHTQLDGAAIASAAGQENNRLDSGTLGFADIDNRAEFKAQHQGFG LSSGGSIGGQFAGNMANSLLAGANQNERARGTTQSAIADGAIVVRDRANQQQDVAGLARDTERAHQPLTPIFDKEKAQRR LQQARLIGEIGNQVADIARTEGEIAGEKARRDPTALNQARTALEASGKPFTEKDVAQRAYNTGMRDSGFGTGGQYQQAIQ AATAAVQGLAGGNLQAALAGGAAPYISEIIKQSTPDGAGRVAAHAVVNAALAAAQGNNALAGAAGAATGEIVGMLATEIY QKPVAELSESEKQTVSTLATVAAGLAGGLVGDAGASALAGAQSGKTTVENNLLGGSEWLQTDKAREHAADVLSCHDNPSG EACRRGLAENKAYAAALAAGSVALLPGSAQAMWGLGAGANAGIGYIVDGSVDPENAIIAGWVNVITMGQGWKETVGWNAA GGAFGNWIDDKDPLTGAIINGSSSAIGYGVGKMIQGPLEKIINPNWKNWEWTDIGMGVSKPLPLNPVPGIAGNIGSSIAS EGSGAIIQEQLKNQQEGK
Sequences:
>Translated_658_residues MVFEKGNSRYATDTTVSAGNTLTLNSGNDTTLKGAQVQGENVVANVGNNLTLRSEQAVDSYEAKQSSFSAGGSIGFGNGS LGIAASRDKMHSDYASVESQSGIFAGTGGFDITVGNHTQLDGAAIASAAGQENNRLDSGTLGFADIDNRAEFKAQHQGFG LSSGGSIGGQFAGNMANSLLAGANQNERARGTTQSAIADGAIVVRDRANQQQDVAGLARDTERAHQPLTPIFDKEKAQRR LQQARLIGEIGNQVADIARTEGEIAGEKARRDPTALNQARTALEASGKPFTEKDVAQRAYNTGMRDSGFGTGGQYQQAIQ AATAAVQGLAGGNLQAALAGGAAPYISEIIKQSTPDGAGRVAAHAVVNAALAAAQGNNALAGAAGAATGEIVGMLATEIY QKPVAELSESEKQTVSTLATVAAGLAGGLVGDAGASALAGAQSGKTTVENNLLGGSEWLQTDKAREHAADVLSCHDNPSG EACRRGLAENKAYAAALAAGSVALLPGSAQAMWGLGAGANAGIGYIVDGSVDPENAIIAGWVNVITMGQGWKETVGWNAA GGAFGNWIDDKDPLTGAIINGSSSAIGYGVGKMIQGPLEKIINPNWKNWEWTDIGMGVSKPLPLNPVPGIAGNIGSSIAS EGSGAIIQEQLKNQQEGK >Mature_658_residues MVFEKGNSRYATDTTVSAGNTLTLNSGNDTTLKGAQVQGENVVANVGNNLTLRSEQAVDSYEAKQSSFSAGGSIGFGNGS LGIAASRDKMHSDYASVESQSGIFAGTGGFDITVGNHTQLDGAAIASAAGQENNRLDSGTLGFADIDNRAEFKAQHQGFG LSSGGSIGGQFAGNMANSLLAGANQNERARGTTQSAIADGAIVVRDRANQQQDVAGLARDTERAHQPLTPIFDKEKAQRR LQQARLIGEIGNQVADIARTEGEIAGEKARRDPTALNQARTALEASGKPFTEKDVAQRAYNTGMRDSGFGTGGQYQQAIQ AATAAVQGLAGGNLQAALAGGAAPYISEIIKQSTPDGAGRVAAHAVVNAALAAAQGNNALAGAAGAATGEIVGMLATEIY QKPVAELSESEKQTVSTLATVAAGLAGGLVGDAGASALAGAQSGKTTVENNLLGGSEWLQTDKAREHAADVLSCHDNPSG EACRRGLAENKAYAAALAAGSVALLPGSAQAMWGLGAGANAGIGYIVDGSVDPENAIIAGWVNVITMGQGWKETVGWNAA GGAFGNWIDDKDPLTGAIINGSSSAIGYGVGKMIQGPLEKIINPNWKNWEWTDIGMGVSKPLPLNPVPGIAGNIGSSIAS EGSGAIIQEQLKNQQEGK
Specific function: Unknown
COG id: COG3210
COG function: function code U; Large exoproteins involved in heme utilization or adhesion
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 66899; Mature: 66899
Theoretical pI: Translated: 4.80; Mature: 4.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVFEKGNSRYATDTTVSAGNTLTLNSGNDTTLKGAQVQGENVVANVGNNLTLRSEQAVDS CCCCCCCCEECCCCEECCCCEEEECCCCCCEEECCEECCCCEEEECCCCEEECCHHHHHH YEAKQSSFSAGGSIGFGNGSLGIAASRDKMHSDYASVESQSGIFAGTGGFDITVGNHTQL HHHHHHHCCCCCCEECCCCCCCEEECHHHHHHHHHHHHCCCCEEEECCCEEEEECCCCCC DGAAIASAAGQENNRLDSGTLGFADIDNRAEFKAQHQGFGLSSGGSIGGQFAGNMANSLL CHHHHHHHCCCCCCCCCCCCCCEEECCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH AGANQNERARGTTQSAIADGAIVVRDRANQQQDVAGLARDTERAHQPLTPIFDKEKAQRR HCCCCCCCCCCCHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH LQQARLIGEIGNQVADIARTEGEIAGEKARRDPTALNQARTALEASGKPFTEKDVAQRAY HHHHHHHHHHHHHHHHHHHHCCHHCCHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH NTGMRDSGFGTGGQYQQAIQAATAAVQGLAGGNLQAALAGGAAPYISEIIKQSTPDGAGR HCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCHHH VAAHAVVNAALAAAQGNNALAGAAGAATGEIVGMLATEIYQKPVAELSESEKQTVSTLAT HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VAAGLAGGLVGDAGASALAGAQSGKTTVENNLLGGSEWLQTDKAREHAADVLSCHDNPSG HHHHHHCCCCCCCCCHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCH EACRRGLAENKAYAAALAAGSVALLPGSAQAMWGLGAGANAGIGYIVDGSVDPENAIIAG HHHHHHHHCCHHHHHHHHCCCEEECCCCCHHHEECCCCCCCCEEEEECCCCCCCCCEEEE WVNVITMGQGWKETVGWNAAGGAFGNWIDDKDPLTGAIINGSSSAIGYGVGKMIQGPLEK EHHHEECCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH IINPNWKNWEWTDIGMGVSKPLPLNPVPGIAGNIGSSIASEGSGAIIQEQLKNQQEGK HCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHCCCC >Mature Secondary Structure MVFEKGNSRYATDTTVSAGNTLTLNSGNDTTLKGAQVQGENVVANVGNNLTLRSEQAVDS CCCCCCCCEECCCCEECCCCEEEECCCCCCEEECCEECCCCEEEECCCCEEECCHHHHHH YEAKQSSFSAGGSIGFGNGSLGIAASRDKMHSDYASVESQSGIFAGTGGFDITVGNHTQL HHHHHHHCCCCCCEECCCCCCCEEECHHHHHHHHHHHHCCCCEEEECCCEEEEECCCCCC DGAAIASAAGQENNRLDSGTLGFADIDNRAEFKAQHQGFGLSSGGSIGGQFAGNMANSLL CHHHHHHHCCCCCCCCCCCCCCEEECCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH AGANQNERARGTTQSAIADGAIVVRDRANQQQDVAGLARDTERAHQPLTPIFDKEKAQRR HCCCCCCCCCCCHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH LQQARLIGEIGNQVADIARTEGEIAGEKARRDPTALNQARTALEASGKPFTEKDVAQRAY HHHHHHHHHHHHHHHHHHHHCCHHCCHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH NTGMRDSGFGTGGQYQQAIQAATAAVQGLAGGNLQAALAGGAAPYISEIIKQSTPDGAGR HCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCHHH VAAHAVVNAALAAAQGNNALAGAAGAATGEIVGMLATEIYQKPVAELSESEKQTVSTLAT HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VAAGLAGGLVGDAGASALAGAQSGKTTVENNLLGGSEWLQTDKAREHAADVLSCHDNPSG HHHHHHCCCCCCCCCHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCH EACRRGLAENKAYAAALAAGSVALLPGSAQAMWGLGAGANAGIGYIVDGSVDPENAIIAG HHHHHHHHCCHHHHHHHHCCCEEECCCCCHHHEECCCCCCCCEEEEECCCCCCCCCEEEE WVNVITMGQGWKETVGWNAAGGAFGNWIDDKDPLTGAIINGSSSAIGYGVGKMIQGPLEK EHHHEECCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH IINPNWKNWEWTDIGMGVSKPLPLNPVPGIAGNIGSSIASEGSGAIIQEQLKNQQEGK HCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA