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The map label for this gene is ybdM [H]

Identifier: 238920861

GI number: 238920861

Start: 2876552

End: 2877181

Strand: Reverse

Name: ybdM [H]

Synonym: NT01EI_2987

Alternate gene names: 238920861

Gene position: 2877181-2876552 (Counterclockwise)

Preceding gene: 238920862

Following gene: 238920859

Centisome position: 75.47

GC content: 61.75

Gene sequence:

>630_bases
ATGACTCTGGAAGCCCTGGAGCAGGCACTGATCGACCTGCTTGAATCCCAGTCGGAGACAGCGCAGCGCGTCGCGCTGCT
TAACCGGCTGCGTACGTTGCTGCACCGCTACAGCCCCTTTGCTGACGAGCCGGTGGACTGCGTGCTGTGGATCGCCAGCG
AACGGATTGAGGCCAATGACTATAACCCCAACGTGATGGCGCCGGTTGAAAAACGGCTACTGCAGCGTTCGCTGGCCTCG
GATGGCTATACCCAGCCGGTGGTGGCGGTGGCGCAGGGAGAGCGCTACGTGGTGATCGACGGGTTTCACCGCTACCTTCT
GGGCCGTAAGAACGGGGCGTTACGCCAGCGTTTGCAGGGCTATCTGCCGGTAACGCTGCTTGTCAGTGCGAGTGAGGATA
CGGCGTCGCGCATTGCGGCCACGATCCGTCATAACCGAGCGCGTGGCAAGCACCAGATCGCGTCGATGTCTGATATCGTA
CGCGATCTGCACCGCCTGGGCTGGGATGAGGAGCGCATCGGCGCAGAGCTGGGAATGGACGCCGATGAGGTGCTACGGCT
CAAGCAGATCAGCGGGCTGGCGGAGCTGTTTGCTGACGAGGACTACAGTCAGGGATGGACGGTGAATTAG

Upstream 100 bases:

>100_bases
TGGTGCCGATCGCTGTCCTTCAGCCCCAATCGGCCACAGGCCTACGAGCGCTACGTTAAGCGGATACAGCAAAAGCGCCA
TCAATGGGAGATTATTTGAG

Downstream 100 bases:

>100_bases
CGGCAAATTAGCGGCAAGCCGTGCCGACGGCCCAGGCTATGAAGTCGCGCAACATATCATTGCTTCCCAAGTTGCCGTCG
TGTGAGCGATTCATCTCCTC

Product: IbrB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MTLEALEQALIDLLESQSETAQRVALLNRLRTLLHRYSPFADEPVDCVLWIASERIEANDYNPNVMAPVEKRLLQRSLAS
DGYTQPVVAVAQGERYVVIDGFHRYLLGRKNGALRQRLQGYLPVTLLVSASEDTASRIAATIRHNRARGKHQIASMSDIV
RDLHRLGWDEERIGAELGMDADEVLRLKQISGLAELFADEDYSQGWTVN

Sequences:

>Translated_209_residues
MTLEALEQALIDLLESQSETAQRVALLNRLRTLLHRYSPFADEPVDCVLWIASERIEANDYNPNVMAPVEKRLLQRSLAS
DGYTQPVVAVAQGERYVVIDGFHRYLLGRKNGALRQRLQGYLPVTLLVSASEDTASRIAATIRHNRARGKHQIASMSDIV
RDLHRLGWDEERIGAELGMDADEVLRLKQISGLAELFADEDYSQGWTVN
>Mature_208_residues
TLEALEQALIDLLESQSETAQRVALLNRLRTLLHRYSPFADEPVDCVLWIASERIEANDYNPNVMAPVEKRLLQRSLASD
GYTQPVVAVAQGERYVVIDGFHRYLLGRKNGALRQRLQGYLPVTLLVSASEDTASRIAATIRHNRARGKHQIASMSDIVR
DLHRLGWDEERIGAELGMDADEVLRLKQISGLAELFADEDYSQGWTVN

Specific function: Unknown

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786817, Length=204, Percent_Identity=54.4117647058823, Blast_Score=233, Evalue=7e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003115 [H]

Pfam domain/function: PF02195 ParBc [H]

EC number: NA

Molecular weight: Translated: 23555; Mature: 23424

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLEALEQALIDLLESQSETAQRVALLNRLRTLLHRYSPFADEPVDCVLWIASERIEAND
CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEHHHHHCCCCCCC
YNPNVMAPVEKRLLQRSLASDGYTQPVVAVAQGERYVVIDGFHRYLLGRKNGALRQRLQG
CCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEECHHHHHHCCCCHHHHHHHHC
YLPVTLLVSASEDTASRIAATIRHNRARGKHQIASMSDIVRDLHRLGWDEERIGAELGMD
CCCEEEEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
ADEVLRLKQISGLAELFADEDYSQGWTVN
HHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
TLEALEQALIDLLESQSETAQRVALLNRLRTLLHRYSPFADEPVDCVLWIASERIEAND
CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEHHHHHCCCCCCC
YNPNVMAPVEKRLLQRSLASDGYTQPVVAVAQGERYVVIDGFHRYLLGRKNGALRQRLQG
CCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEECHHHHHHCCCCHHHHHHHHC
YLPVTLLVSASEDTASRIAATIRHNRARGKHQIASMSDIVRDLHRLGWDEERIGAELGMD
CCCEEEEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
ADEVLRLKQISGLAELFADEDYSQGWTVN
HHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]