| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238920858
Identifier: 238920858
GI number: 238920858
Start: 2873491
End: 2874957
Strand: Reverse
Name: 238920858
Synonym: NT01EI_2984
Alternate gene names: NA
Gene position: 2874957-2873491 (Counterclockwise)
Preceding gene: 238920859
Following gene: 238920856
Centisome position: 75.41
GC content: 44.51
Gene sequence:
>1467_bases ATGGCTCGCATGTTTTTAACAATGTGGGTGGGCTTGTACGCTCTCTTGTGGAGTCTGGCTACAATCTTTCTGGACCCAGC GGTACCTTATGACGCAATTGAAGCATTGAACTGGGCACAAAATGCAGAATGGGGATCACCGAAAAACCCTTGGCTGGTTG GTATGGTATGGCGTCCGGCGCTGTGGTTTTCAGATATCCCACTGAGCACTTATTGGTATACCACACATTTTTTGGCGATT GCTATAGGAATGACGGGGTGCTGGTTTCTCGCAAAATATCTTAGCGGTAGTGAACGCCTGGCTTGGCTTGCATTATGCAC TCTTAATTTATCAGGGATTATTAATTTCGATATTATTAGCTACAATGATAACTATTTGCTGGTTATGTTGTGGCCATGGA TGCTCTTGTCATTTTTTCTGGCACTCACCCGTCATCCAGCGTGGTGGATAATATTTGCATGTACAGCAGGTCTGGGAGTA ATGGCTAAGTATTCAACGCTGGCATTTGTCGCTGCGGTATTTATTGCTACATTGGCTTCGCCAAAAATTCGGAGGTGTTA TCGCCAGCCTATATTTTATCTGGCGCTACTTATTGGCCTTGCAATTATTGCTCCAAACTTATTCTGGCTGTGGGAGCATA ACTTCGTAGCGTTCAGTTGGGTAGATTCACAGATAGAGCGTCAGTTTAACCCTGGTATATTTATAAAACTAATCAGCATC TATTATCCGCTACTGTTCTTATGGTGGATATTGTACTCAAAAAAAATCCCACTGCAATGGCCAGTTGACACTAATAAAAG CATCCTGCTATTGGTGTTTTTAGTGCCTCAGGTATTGATTGGGTTATGGTTTCTGTTCCACCAGGGGGGGAGACTAACTG AATGGCTTCAGCCGTTTTTCATTCTGGCTCCCGCACTGGTTATAGCCTGTGTAGCTACTCCCTGTGCGCAGCCAGTGAGA AGGCCTGTCTTGGTGCTAATGGGGGCAGCAATTCTCGTGTTACTTGGGTATACCATCGTTATGGTAACTAATGTAGGTAA TGCGGGGCGAAAAATGAGCGGTATTATCCCGTTCAGCCATCATGTGGAACGGCTATGGCAGGAGCGCTATGGTACCCCAC TGCGTCTGGTTGGGGGAGAGCATCTGTCTGAGTGGCTTATTTTTTATGGGAGGTCAAGGCCCGAAATCATCACGCCTTGG AGTAACAGCACTAAACCGAATATTTATAATGCGAATATCAGATTTACCGATATCAAACAATCAGGTGCATTACTGATAGG CCGATCTGATAACAAATGTACTCGCGCTTCGTTTACTCAGGTACTAAATCAATGGCCACACTTGCAACTTGACGCTATCA GTCGGGTAACCTTTCAAGAAGATGACAAACATAGCAGTTATCCTGTCTGTATCGGATTTGTAAAACCGAGTGCATTAAAT AAAGGTATTTTTGGTAAAAGCCGCTAA
Upstream 100 bases:
>100_bases TGGAGTCATCACCTAAATTCCTTTCTGTTTATCTAAAAAATACAGTCTACTCTCTAGAATAGCGCTTTAACTATTTGTTG ATTTTTATTAAGGGAAACAT
Downstream 100 bases:
>100_bases ATAGCGGCTTTGTTAATGAATGGACTGCCCCCAAAAACATAAACAAATTCTGTCCTCACGAAGAGGCCCGTTCAAAGGCC TCCGGACTAACGCCTCCTGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 488; Mature: 487
Protein sequence:
>488_residues MARMFLTMWVGLYALLWSLATIFLDPAVPYDAIEALNWAQNAEWGSPKNPWLVGMVWRPALWFSDIPLSTYWYTTHFLAI AIGMTGCWFLAKYLSGSERLAWLALCTLNLSGIINFDIISYNDNYLLVMLWPWMLLSFFLALTRHPAWWIIFACTAGLGV MAKYSTLAFVAAVFIATLASPKIRRCYRQPIFYLALLIGLAIIAPNLFWLWEHNFVAFSWVDSQIERQFNPGIFIKLISI YYPLLFLWWILYSKKIPLQWPVDTNKSILLLVFLVPQVLIGLWFLFHQGGRLTEWLQPFFILAPALVIACVATPCAQPVR RPVLVLMGAAILVLLGYTIVMVTNVGNAGRKMSGIIPFSHHVERLWQERYGTPLRLVGGEHLSEWLIFYGRSRPEIITPW SNSTKPNIYNANIRFTDIKQSGALLIGRSDNKCTRASFTQVLNQWPHLQLDAISRVTFQEDDKHSSYPVCIGFVKPSALN KGIFGKSR
Sequences:
>Translated_488_residues MARMFLTMWVGLYALLWSLATIFLDPAVPYDAIEALNWAQNAEWGSPKNPWLVGMVWRPALWFSDIPLSTYWYTTHFLAI AIGMTGCWFLAKYLSGSERLAWLALCTLNLSGIINFDIISYNDNYLLVMLWPWMLLSFFLALTRHPAWWIIFACTAGLGV MAKYSTLAFVAAVFIATLASPKIRRCYRQPIFYLALLIGLAIIAPNLFWLWEHNFVAFSWVDSQIERQFNPGIFIKLISI YYPLLFLWWILYSKKIPLQWPVDTNKSILLLVFLVPQVLIGLWFLFHQGGRLTEWLQPFFILAPALVIACVATPCAQPVR RPVLVLMGAAILVLLGYTIVMVTNVGNAGRKMSGIIPFSHHVERLWQERYGTPLRLVGGEHLSEWLIFYGRSRPEIITPW SNSTKPNIYNANIRFTDIKQSGALLIGRSDNKCTRASFTQVLNQWPHLQLDAISRVTFQEDDKHSSYPVCIGFVKPSALN KGIFGKSR >Mature_487_residues ARMFLTMWVGLYALLWSLATIFLDPAVPYDAIEALNWAQNAEWGSPKNPWLVGMVWRPALWFSDIPLSTYWYTTHFLAIA IGMTGCWFLAKYLSGSERLAWLALCTLNLSGIINFDIISYNDNYLLVMLWPWMLLSFFLALTRHPAWWIIFACTAGLGVM AKYSTLAFVAAVFIATLASPKIRRCYRQPIFYLALLIGLAIIAPNLFWLWEHNFVAFSWVDSQIERQFNPGIFIKLISIY YPLLFLWWILYSKKIPLQWPVDTNKSILLLVFLVPQVLIGLWFLFHQGGRLTEWLQPFFILAPALVIACVATPCAQPVRR PVLVLMGAAILVLLGYTIVMVTNVGNAGRKMSGIIPFSHHVERLWQERYGTPLRLVGGEHLSEWLIFYGRSRPEIITPWS NSTKPNIYNANIRFTDIKQSGALLIGRSDNKCTRASFTQVLNQWPHLQLDAISRVTFQEDDKHSSYPVCIGFVKPSALNK GIFGKSR
Specific function: Unknown
COG id: COG1807
COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55812; Mature: 55680
Theoretical pI: Translated: 9.63; Mature: 9.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARMFLTMWVGLYALLWSLATIFLDPAVPYDAIEALNWAQNAEWGSPKNPWLVGMVWRPA CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEECCC LWFSDIPLSTYWYTTHFLAIAIGMTGCWFLAKYLSGSERLAWLALCTLNLSGIINFDIIS HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEEEE YNDNYLLVMLWPWMLLSFFLALTRHPAWWIIFACTAGLGVMAKYSTLAFVAAVFIATLAS ECCCEEEEHHHHHHHHHHHHHHHCCCCCEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHCC PKIRRCYRQPIFYLALLIGLAIIAPNLFWLWEHNFVAFSWVDSQIERQFNPGIFIKLISI HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEEHHHHHHHHCCCCHHHHHHHH YYPLLFLWWILYSKKIPLQWPVDTNKSILLLVFLVPQVLIGLWFLFHQGGRLTEWLQPFF HHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH ILAPALVIACVATPCAQPVRRPVLVLMGAAILVLLGYTIVMVTNVGNAGRKMSGIIPFSH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCHHH HVERLWQERYGTPLRLVGGEHLSEWLIFYGRSRPEIITPWSNSTKPNIYNANIRFTDIKQ HHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCCCEECCCCCCCCCCEEECCEEEEEECC SGALLIGRSDNKCTRASFTQVLNQWPHLQLDAISRVTFQEDDKHSSYPVCIGFVKPSALN CCCEEEECCCCCHHHHHHHHHHHHCCCCEEHHHHHCCCCCCCCCCCCCEEEEEECCHHHC KGIFGKSR CCCCCCCC >Mature Secondary Structure ARMFLTMWVGLYALLWSLATIFLDPAVPYDAIEALNWAQNAEWGSPKNPWLVGMVWRPA CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEECCC LWFSDIPLSTYWYTTHFLAIAIGMTGCWFLAKYLSGSERLAWLALCTLNLSGIINFDIIS HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEEEE YNDNYLLVMLWPWMLLSFFLALTRHPAWWIIFACTAGLGVMAKYSTLAFVAAVFIATLAS ECCCEEEEHHHHHHHHHHHHHHHCCCCCEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHCC PKIRRCYRQPIFYLALLIGLAIIAPNLFWLWEHNFVAFSWVDSQIERQFNPGIFIKLISI HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEEHHHHHHHHCCCCHHHHHHHH YYPLLFLWWILYSKKIPLQWPVDTNKSILLLVFLVPQVLIGLWFLFHQGGRLTEWLQPFF HHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH ILAPALVIACVATPCAQPVRRPVLVLMGAAILVLLGYTIVMVTNVGNAGRKMSGIIPFSH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCHHH HVERLWQERYGTPLRLVGGEHLSEWLIFYGRSRPEIITPWSNSTKPNIYNANIRFTDIKQ HHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCCCEECCCCCCCCCCEEECCEEEEEECC SGALLIGRSDNKCTRASFTQVLNQWPHLQLDAISRVTFQEDDKHSSYPVCIGFVKPSALN CCCEEEECCCCCHHHHHHHHHHHHCCCCEEHHHHHCCCCCCCCCCCCCEEEEEECCHHHC KGIFGKSR CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA