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The map label for this gene is ybfE [H]

Identifier: 238920778

GI number: 238920778

Start: 2788311

End: 2788610

Strand: Direct

Name: ybfE [H]

Synonym: NT01EI_2897

Alternate gene names: 238920778

Gene position: 2788311-2788610 (Clockwise)

Preceding gene: 238920777

Following gene: 238920779

Centisome position: 73.14

GC content: 58.67

Gene sequence:

>300_bases
TTGCAGTACCGCTACCTGAATATGGCCAAAGAACAAACGGACCGCACGACGCTCGATCTGTTCGCGGAAGAACGTCGTCC
AGGTCGTCCCAAAACCAACCCGCTTTCCCGGGAAGAGCAGCTGCGGATTAACAAGCGCAACCAGCTGCGGCGCGACCGGG
TTAAAGGGCTGCGCCGCGTCGAGCTGAAGATGAATGAAGAGGCGGTCGATCTCCTCAACCGTCTGGCTCAAGAGCGCAAC
ATCAGCCGCAGCGAGCTGATCGAGCAGATGCTGCTCAGTCAGCTACCGCTGGATACCTGA

Upstream 100 bases:

>100_bases
ATGGCGTGCTAAAATGGGCGGCGCGTCCCCGTACGGTGCCGTCGGGTGAAATCCCGTATATATGTTAATCGGAGTCCGGG
GTTCCCGTACTCCCTTCTCC

Downstream 100 bases:

>100_bases
CCCGCCCGGCGCTGCGCACAATGACGATAAAGCCGCGACGCCAAAGATGTTATAGTATCCCTCTGCTAGGTAGGCTGAGT
GTATGGCCACGTCCCGTTGG

Product: LexA regulated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 99; Mature: 99

Protein sequence:

>99_residues
MQYRYLNMAKEQTDRTTLDLFAEERRPGRPKTNPLSREEQLRINKRNQLRRDRVKGLRRVELKMNEEAVDLLNRLAQERN
ISRSELIEQMLLSQLPLDT

Sequences:

>Translated_99_residues
MQYRYLNMAKEQTDRTTLDLFAEERRPGRPKTNPLSREEQLRINKRNQLRRDRVKGLRRVELKMNEEAVDLLNRLAQERN
ISRSELIEQMLLSQLPLDT
>Mature_99_residues
MQYRYLNMAKEQTDRTTLDLFAEERRPGRPKTNPLSREEQLRINKRNQLRRDRVKGLRRVELKMNEEAVDLLNRLAQERN
ISRSELIEQMLLSQLPLDT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081770, Length=88, Percent_Identity=80.6818181818182, Blast_Score=145, Evalue=7e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002145 [H]

Pfam domain/function: PF01402 RHH_1 [H]

EC number: NA

Molecular weight: Translated: 11936; Mature: 11936

Theoretical pI: Translated: 10.69; Mature: 10.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYRYLNMAKEQTDRTTLDLFAEERRPGRPKTNPLSREEQLRINKRNQLRRDRVKGLRRV
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHH
ELKMNEEAVDLLNRLAQERNISRSELIEQMLLSQLPLDT
HHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQYRYLNMAKEQTDRTTLDLFAEERRPGRPKTNPLSREEQLRINKRNQLRRDRVKGLRRV
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHH
ELKMNEEAVDLLNRLAQERNISRSELIEQMLLSQLPLDT
HHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]