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The map label for this gene is cydA [H]

Identifier: 238920745

GI number: 238920745

Start: 2751020

End: 2752582

Strand: Reverse

Name: cydA [H]

Synonym: NT01EI_2864

Alternate gene names: 238920745

Gene position: 2752582-2751020 (Counterclockwise)

Preceding gene: 238920746

Following gene: 238920744

Centisome position: 72.2

GC content: 56.37

Gene sequence:

>1563_bases
ATGTTTGATATTGTCGAACTGTCTCGTTTACAGTTTGCCTTAACGGCGATGTACCATTTCCTGTTTGTCCCGCTGACGCT
GGGGATGGCGTTTTTGCTGGCCATCATGGAAACGGTATATGTGCTGACCGGCAAGCAAATCTATAAAGATATGACCAAGT
TTTGGGGTAAGTTGTTCGGTATCAACTTTGCCCTGGGGGTCGCTACCGGTTTGACCATGGAGTTCCAGTTCGGGACCAAC
TGGTCGTACTACTCTCACTACGTCGGCGATATCTTCGGTGCGCCGCTGGCCATCGAAGGGCTGATGGCGTTCTTCCTTGA
GTCTACCTTCGTCGGGCTGTTCTTCTTTGGCTGGGATCGCCTGGGCAAAGTGCAGCATATGATGGTGACCTGGCTGGTCG
CGTTGGGCTCTAACCTCTCCGCGCTGTGGATCCTGGTGGCCAACGGCTGGATGCAGAACCCGATTGCCTCCGACTTTAAC
TTTGAAACCATGCGCATGGAGATGCTGAGCTTTTCTGAGCTGGTGCTGAATCCGGTAGCACAGGTAAAGTTCGTGCATAC
CGTTTCTGCCGGCTACATCACCGGCGCCATGTTCATTCTGGGCGTTAGTGCTTACTATCTGCTGAAAGGCCGTGATTTTG
CTTTTGCCAAGCGCTCGTTCGCTATCGCCACCGCCTTTGGTATGGCTTCGGTGATCGCTGTTATCCTGCTGGGGGATGAG
TCTGGCTATGAGATTGGGAGCGTGCAGAAGACCAAACTGGCGGCCATTGAGGCCGAGTGGGAAACCCAGCCAGCGCCGGC
TTCTTTCAACCTGTTCGCCATCCCGGATCAGCAGACGGAGAGTAACCGCTACGCGATTGAGGTACCGTATCTGCTGGGCC
TGATTGCTACCCGCTCTCTCGATCAGCAGGTTATTGGCCTGAAGGATCTGATGAAGGAGAATGAGGGGCGCATCCGTAAC
GGGATGAAGAGCTACCAGCTGCTGCAGGAGCTGCGTACCGGCAATACCGATCCGGCGGTGCGCGACGCTTTTAACCGCAG
CAAGCAGGATCTGGGCTACGGTCTGCTGCTGAAGCGCTATACCGATAACCCGGCTCAGGCCAGCGACGCGCAGATCACCA
AGGCAGCCAAAGACTCCATCCCTGAAGTAGCGCCGCTGTACTTCGCTTTCCGTATCATGGTCGGCTGTGGTGTGTTGATG
ACGCTGCTGATCCTGGCGTCGTTCTACAGCGTGGTGCGCGGGCGCATCGGTGAGAAGCGCTGGCTGTTGCGCGCCGCGCT
GCTGGGGATACCATTGCCGTGGATTGCCTGTGAGGCAGGCTGGTTTGTGGCCGAGTATGGCCGTCAGCCGTGGGCGATCA
ACGATATACTGCCGACGGCGGTTGCCAACTCGTCGCTGACTGCAGGCGACCTGTGGTTTTCGATCATTCTGATCTGCGGT
CTGTATACGCTGTTCCTGATCGCTGAGCTGTATCTGATGTTCAAGTTCGCCCGACTGGGGCCGAGCAGCCTGAAGACCGG
CCGCTATCATTTTGAGCAGACGAATGCGGTAGACGCACGGTAA

Upstream 100 bases:

>100_bases
GGGTGAAGGGCATTCATTACTGGTTGTTATGTGACTTCCGTAGAAACGGAAGCCGAGTTACCGCAAGTCGGAGTCTTCCT
GCGAGGAGCAAGGAGTCAAG

Downstream 100 bases:

>100_bases
ACAGGAGTCCACACTATGTTCGAATATGAAGTATTGCGCTTTATCTGGTGGCTGCTGGTCGGGGTGCTGCTGATCGGATT
TGCGATCACCGATGGTTTTG

Product: cytochrome D ubiquinol oxidase subunit 1

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit I; Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 520; Mature: 520

Protein sequence:

>520_residues
MFDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLTGKQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGTN
WSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDRLGKVQHMMVTWLVALGSNLSALWILVANGWMQNPIASDFN
FETMRMEMLSFSELVLNPVAQVKFVHTVSAGYITGAMFILGVSAYYLLKGRDFAFAKRSFAIATAFGMASVIAVILLGDE
SGYEIGSVQKTKLAAIEAEWETQPAPASFNLFAIPDQQTESNRYAIEVPYLLGLIATRSLDQQVIGLKDLMKENEGRIRN
GMKSYQLLQELRTGNTDPAVRDAFNRSKQDLGYGLLLKRYTDNPAQASDAQITKAAKDSIPEVAPLYFAFRIMVGCGVLM
TLLILASFYSVVRGRIGEKRWLLRAALLGIPLPWIACEAGWFVAEYGRQPWAINDILPTAVANSSLTAGDLWFSIILICG
LYTLFLIAELYLMFKFARLGPSSLKTGRYHFEQTNAVDAR

Sequences:

>Translated_520_residues
MFDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLTGKQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGTN
WSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDRLGKVQHMMVTWLVALGSNLSALWILVANGWMQNPIASDFN
FETMRMEMLSFSELVLNPVAQVKFVHTVSAGYITGAMFILGVSAYYLLKGRDFAFAKRSFAIATAFGMASVIAVILLGDE
SGYEIGSVQKTKLAAIEAEWETQPAPASFNLFAIPDQQTESNRYAIEVPYLLGLIATRSLDQQVIGLKDLMKENEGRIRN
GMKSYQLLQELRTGNTDPAVRDAFNRSKQDLGYGLLLKRYTDNPAQASDAQITKAAKDSIPEVAPLYFAFRIMVGCGVLM
TLLILASFYSVVRGRIGEKRWLLRAALLGIPLPWIACEAGWFVAEYGRQPWAINDILPTAVANSSLTAGDLWFSIILICG
LYTLFLIAELYLMFKFARLGPSSLKTGRYHFEQTNAVDAR
>Mature_520_residues
MFDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLTGKQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGTN
WSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDRLGKVQHMMVTWLVALGSNLSALWILVANGWMQNPIASDFN
FETMRMEMLSFSELVLNPVAQVKFVHTVSAGYITGAMFILGVSAYYLLKGRDFAFAKRSFAIATAFGMASVIAVILLGDE
SGYEIGSVQKTKLAAIEAEWETQPAPASFNLFAIPDQQTESNRYAIEVPYLLGLIATRSLDQQVIGLKDLMKENEGRIRN
GMKSYQLLQELRTGNTDPAVRDAFNRSKQDLGYGLLLKRYTDNPAQASDAQITKAAKDSIPEVAPLYFAFRIMVGCGVLM
TLLILASFYSVVRGRIGEKRWLLRAALLGIPLPWIACEAGWFVAEYGRQPWAINDILPTAVANSSLTAGDLWFSIILICG
LYTLFLIAELYLMFKFARLGPSSLKTGRYHFEQTNAVDAR

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=515, Percent_Identity=84.0776699029126, Blast_Score=910, Evalue=0.0,
Organism=Escherichia coli, GI1787212, Length=506, Percent_Identity=63.4387351778656, Blast_Score=673, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 58083; Mature: 58083

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLTGKQIYKDMTKFWGKLFG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
INFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDR
CHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LGKVQHMMVTWLVALGSNLSALWILVANGWMQNPIASDFNFETMRMEMLSFSELVLNPVA
HHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHH
QVKFVHTVSAGYITGAMFILGVSAYYLLKGRDFAFAKRSFAIATAFGMASVIAVILLGDE
HHEEHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHEECCC
SGYEIGSVQKTKLAAIEAEWETQPAPASFNLFAIPDQQTESNRYAIEVPYLLGLIATRSL
CCCCCCCCCHHHHEEEEECCCCCCCCCCEEEEECCCCCCCCCCEEEEHHHHHHHHHHHHH
DQQVIGLKDLMKENEGRIRNGMKSYQLLQELRTGNTDPAVRDAFNRSKQDLGYGLLLKRY
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHCCHHHEEEEC
TDNPAQASDAQITKAAKDSIPEVAPLYFAFRIMVGCGVLMTLLILASFYSVVRGRIGEKR
CCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
WLLRAALLGIPLPWIACEAGWFVAEYGRQPWAINDILPTAVANSSLTAGDLWFSIILICG
HHHHHHHHHCCCCHHHHCCCCHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH
LYTLFLIAELYLMFKFARLGPSSLKTGRYHFEQTNAVDAR
HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCC
>Mature Secondary Structure
MFDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLTGKQIYKDMTKFWGKLFG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
INFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDR
CHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LGKVQHMMVTWLVALGSNLSALWILVANGWMQNPIASDFNFETMRMEMLSFSELVLNPVA
HHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHH
QVKFVHTVSAGYITGAMFILGVSAYYLLKGRDFAFAKRSFAIATAFGMASVIAVILLGDE
HHEEHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHEECCC
SGYEIGSVQKTKLAAIEAEWETQPAPASFNLFAIPDQQTESNRYAIEVPYLLGLIATRSL
CCCCCCCCCHHHHEEEEECCCCCCCCCCEEEEECCCCCCCCCCEEEEHHHHHHHHHHHHH
DQQVIGLKDLMKENEGRIRNGMKSYQLLQELRTGNTDPAVRDAFNRSKQDLGYGLLLKRY
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHCCHHHEEEEC
TDNPAQASDAQITKAAKDSIPEVAPLYFAFRIMVGCGVLMTLLILASFYSVVRGRIGEKR
CCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
WLLRAALLGIPLPWIACEAGWFVAEYGRQPWAINDILPTAVANSSLTAGDLWFSIILICG
HHHHHHHHHCCCCHHHHCCCCHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH
LYTLFLIAELYLMFKFARLGPSSLKTGRYHFEQTNAVDAR
HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]