| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is gpmA
Identifier: 238920733
GI number: 238920733
Start: 2738763
End: 2739515
Strand: Direct
Name: gpmA
Synonym: NT01EI_2846
Alternate gene names: 238920733
Gene position: 2738763-2739515 (Clockwise)
Preceding gene: 238920731
Following gene: 238920735
Centisome position: 71.84
GC content: 60.16
Gene sequence:
>753_bases ATGGCTGTCACTAAACTGGTTCTGCTCCGCCACGGCGAAAGCGAATGGAACCGGGAAAACCGCTTCACCGGCTGGACCGA CGTTGAACTGTCAGAGAAGGGGCGCCAGGAGGCACTGGCAGCAGGCCGTCTTCTGAAGGCGCAGGGATTTTCCTTTGACA TCGCCTACACCTCCGTGCTTAAACGTGCCATTCATACTCTGTGGCACGTACTGGATAAGCTCGATCAGCCGTGGCTGCCG GTGGAGAAGTCATGGAAGCTCAATGAGCGTCACTATGGCGCTCTGCAGGGACTGAACAAGGCAGAGACCGCGCAGCAGTA CGGCGATGAACAGGTCAAGCTATGGCGCCGCGCCTTTGCCATCACCCCGCCGGCCCTGACGCCGGACGATCCCCGCTATC CCGGTCACGATCCGCGCTATGCGGCCCTGAGCGCCGACGAACTCCCGCTGACCGAGAGCCTGGCCACCACCATTGAACGG GTGATCCCCTATTGGCAGCAGCAGATAGCACCACGTATCTCCGCCGGTGAGCGGATCATCATCGCCGCCCATGGCAATTC GCTGCGCGCGCTGGTAAAGCATCTGGATCACCTGAGCGAAGGCGAGATTGTCGAGCTGAATATCCCGACCGGCGTTCCGC TGGTATATGAGTTCGACAAAAATATGCGGCCGCTGCATCATTATTATCTCGGCGACGCCACCGAGATTGCCGCCCGCCAA AGCGCCGTCGCCAATCAGGGCAAGGCAGGCTAA
Upstream 100 bases:
>100_bases GCGGTCGGAGAAAAGCGCCAGACGTGCGCCGGGTTATTGCATTCCACACACTATAATGATAATAATTATCATTATAGTGT CGTAATTAAGGAGTCTCACT
Downstream 100 bases:
>100_bases CCTAGCCCGCCTTCTTAACTCCGCCACGGCGCCGGGCTCCGTGGCGGCCAGCGCACCTAGGCGGTTAGCCGTGTCCGGCG CGCGCGTACCGCGTCGGCCA
Product: phosphoglyceromutase
Products: NA
Alternate protein names: BPG-dependent PGAM; PGAM; Phosphoglyceromutase; dPGM
Number of amino acids: Translated: 250; Mature: 249
Protein sequence:
>250_residues MAVTKLVLLRHGESEWNRENRFTGWTDVELSEKGRQEALAAGRLLKAQGFSFDIAYTSVLKRAIHTLWHVLDKLDQPWLP VEKSWKLNERHYGALQGLNKAETAQQYGDEQVKLWRRAFAITPPALTPDDPRYPGHDPRYAALSADELPLTESLATTIER VIPYWQQQIAPRISAGERIIIAAHGNSLRALVKHLDHLSEGEIVELNIPTGVPLVYEFDKNMRPLHHYYLGDATEIAARQ SAVANQGKAG
Sequences:
>Translated_250_residues MAVTKLVLLRHGESEWNRENRFTGWTDVELSEKGRQEALAAGRLLKAQGFSFDIAYTSVLKRAIHTLWHVLDKLDQPWLP VEKSWKLNERHYGALQGLNKAETAQQYGDEQVKLWRRAFAITPPALTPDDPRYPGHDPRYAALSADELPLTESLATTIER VIPYWQQQIAPRISAGERIIIAAHGNSLRALVKHLDHLSEGEIVELNIPTGVPLVYEFDKNMRPLHHYYLGDATEIAARQ SAVANQGKAG >Mature_249_residues AVTKLVLLRHGESEWNRENRFTGWTDVELSEKGRQEALAAGRLLKAQGFSFDIAYTSVLKRAIHTLWHVLDKLDQPWLPV EKSWKLNERHYGALQGLNKAETAQQYGDEQVKLWRRAFAITPPALTPDDPRYPGHDPRYAALSADELPLTESLATTIERV IPYWQQQIAPRISAGERIIIAAHGNSLRALVKHLDHLSEGEIVELNIPTGVPLVYEFDKNMRPLHHYYLGDATEIAARQS AVANQGKAG
Specific function: Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
COG id: COG0588
COG function: function code G; Phosphoglycerate mutase 1
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily
Homologues:
Organism=Homo sapiens, GI50593010, Length=252, Percent_Identity=55.1587301587302, Blast_Score=291, Evalue=3e-79, Organism=Homo sapiens, GI4505753, Length=252, Percent_Identity=56.3492063492063, Blast_Score=284, Evalue=5e-77, Organism=Homo sapiens, GI71274132, Length=252, Percent_Identity=53.968253968254, Blast_Score=270, Evalue=1e-72, Organism=Homo sapiens, GI4502445, Length=254, Percent_Identity=48.4251968503937, Blast_Score=263, Evalue=1e-70, Organism=Homo sapiens, GI40353764, Length=254, Percent_Identity=48.4251968503937, Blast_Score=263, Evalue=1e-70, Organism=Homo sapiens, GI310129614, Length=165, Percent_Identity=57.5757575757576, Blast_Score=185, Evalue=3e-47, Organism=Escherichia coli, GI1786970, Length=249, Percent_Identity=79.1164658634538, Blast_Score=407, Evalue=1e-115, Organism=Saccharomyces cerevisiae, GI6322697, Length=246, Percent_Identity=52.0325203252033, Blast_Score=253, Evalue=2e-68, Organism=Saccharomyces cerevisiae, GI6324516, Length=283, Percent_Identity=32.5088339222615, Blast_Score=134, Evalue=1e-32, Organism=Saccharomyces cerevisiae, GI6320183, Length=299, Percent_Identity=29.7658862876254, Blast_Score=127, Evalue=1e-30, Organism=Drosophila melanogaster, GI24646216, Length=249, Percent_Identity=51.8072289156626, Blast_Score=270, Evalue=9e-73, Organism=Drosophila melanogaster, GI85725270, Length=249, Percent_Identity=53.8152610441767, Blast_Score=261, Evalue=3e-70, Organism=Drosophila melanogaster, GI85725272, Length=249, Percent_Identity=53.8152610441767, Blast_Score=261, Evalue=3e-70, Organism=Drosophila melanogaster, GI24650981, Length=249, Percent_Identity=53.8152610441767, Blast_Score=261, Evalue=3e-70, Organism=Drosophila melanogaster, GI28571817, Length=250, Percent_Identity=39.6, Blast_Score=179, Evalue=2e-45, Organism=Drosophila melanogaster, GI28571815, Length=250, Percent_Identity=39.6, Blast_Score=178, Evalue=2e-45, Organism=Drosophila melanogaster, GI24648979, Length=250, Percent_Identity=39.6, Blast_Score=178, Evalue=3e-45,
Paralogues:
None
Copy number: 960 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): GPMA_EDWI9 (C5BEL3)
Other databases:
- EMBL: CP001600 - RefSeq: YP_002934248.1 - ProteinModelPortal: C5BEL3 - GeneID: 7959494 - GenomeReviews: CP001600_GR - KEGG: eic:NT01EI_2846 - OMA: TGWKDPD - ProtClustDB: PRK14115 - GO: GO:0006096 - HAMAP: MF_01039 - InterPro: IPR013078 - InterPro: IPR001345 - InterPro: IPR005952 - PANTHER: PTHR11931 - SMART: SM00855 - TIGRFAMs: TIGR01258
Pfam domain/function: PF00300 PGAM
EC number: =5.4.2.1
Molecular weight: Translated: 28214; Mature: 28083
Theoretical pI: Translated: 7.10; Mature: 7.10
Prosite motif: PS00175 PG_MUTASE
Important sites: ACT_SITE 11-11 ACT_SITE 184-184
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVTKLVLLRHGESEWNRENRFTGWTDVELSEKGRQEALAAGRLLKAQGFSFDIAYTSVL CCHHHHHHHHCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHH KRAIHTLWHVLDKLDQPWLPVEKSWKLNERHYGALQGLNKAETAQQYGDEQVKLWRRAFA HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHH ITPPALTPDDPRYPGHDPRYAALSADELPLTESLATTIERVIPYWQQQIAPRISAGERII CCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE IAAHGNSLRALVKHLDHLSEGEIVELNIPTGVPLVYEFDKNMRPLHHYYLGDATEIAARQ EEECCCHHHHHHHHHHCCCCCCEEEEECCCCCCEEEECCCCCCHHHHHHCCCHHHHHHHH SAVANQGKAG HHHHCCCCCC >Mature Secondary Structure AVTKLVLLRHGESEWNRENRFTGWTDVELSEKGRQEALAAGRLLKAQGFSFDIAYTSVL CHHHHHHHHCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHH KRAIHTLWHVLDKLDQPWLPVEKSWKLNERHYGALQGLNKAETAQQYGDEQVKLWRRAFA HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHH ITPPALTPDDPRYPGHDPRYAALSADELPLTESLATTIERVIPYWQQQIAPRISAGERII CCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE IAAHGNSLRALVKHLDHLSEGEIVELNIPTGVPLVYEFDKNMRPLHHYYLGDATEIAARQ EEECCCHHHHHHHHHHCCCCCCEEEEECCCCCCEEEECCCCCCHHHHHHCCCHHHHHHHH SAVANQGKAG HHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA