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The map label for this gene is ydcF [H]

Identifier: 238920724

GI number: 238920724

Start: 2729440

End: 2730216

Strand: Reverse

Name: ydcF [H]

Synonym: NT01EI_2837

Alternate gene names: 238920724

Gene position: 2730216-2729440 (Counterclockwise)

Preceding gene: 238920725

Following gene: 238920723

Centisome position: 71.62

GC content: 70.14

Gene sequence:

>777_bases
GTGTTTTCCGATGACCAACTACATGATATCAACCTGATCGCCCGCTTTTTGGCCTGCGATGCGTTCGCCGGAGCGAGGCC
CGCTGTCGGCAGCGCCGATCTGCTGGTGTTGCTGGGTAACGCCCTGCTGCCGACCGCCTGGCGCAGCTTCGACGCCGTGC
GCGTCGGCGTGGCACCGCGGCTGCTGATCGCCGGCGGAATCGGCCACTCCACGCCGCTGCTGTATCAGGCGCTGGCCGAT
GAACCGGCGGCCAGCGGGCTGGCGACGGCGGGGCAGGCCGAAGCCCCGCTGCTGGCGGCACTGGCTCTCCGGCAGGGAGT
GCTGGTGCCGTCGCAGATCTGGCTGGAGAGCGCGTCGACCAACTGCGGGGAGAACGCGCGCTTTGCCCGCGCGCTGCTGC
AGGAGAAGGGGGCGACGCCGTCGCGCCTGCTGCTGGTACAGGATCCCCTGATGCAGCGCCGCACGCTGGCAACCTTTTTG
CGGGTCTGGCAGGATCGCCCCACGGTGCAGTTTGCCAGCTGGCCGACCTTTGTGCCCCGCCTGGAGCGCAGCGCCGACGG
GGTGACGATCGCGGGGGCCCCCGGCGCCCTGTGGCCGCTGGAGCGCTTTATGTCGCTGCTGCTGGGGGAGATCCCGCGCC
TGCGCGACGATGAGCGGGGTTACGGGCCGCGCGGGCGCGATTTTATCGCCCATGTCACCATTCCCGATACGGTGGAGGCC
GCCTTTACGCGGGTGGCGGCGTCGCTGGGGGGGCGCTATGGCTTCCGGCTGGCCTAA

Upstream 100 bases:

>100_bases
GCGGGGGGCCTATCGCGCCGCTGTGTTTCCGACATCGCCCGGCAAAGCCGGGCGATGTGCTGTCTGGCGCTGCCACTTTC
CATCCGCCGCGGAGGCTGCC

Downstream 100 bases:

>100_bases
GTGAGCTGCCGCGCGGGTGATACATCTGCGCCGTGGTCACGCCTAAATGCCAACGGCGTCATATTTAGCGCTTTTTTCAG
TGTTCTTGCCCGTGCTAACG

Product: protein YdcF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MFSDDQLHDINLIARFLACDAFAGARPAVGSADLLVLLGNALLPTAWRSFDAVRVGVAPRLLIAGGIGHSTPLLYQALAD
EPAASGLATAGQAEAPLLAALALRQGVLVPSQIWLESASTNCGENARFARALLQEKGATPSRLLLVQDPLMQRRTLATFL
RVWQDRPTVQFASWPTFVPRLERSADGVTIAGAPGALWPLERFMSLLLGEIPRLRDDERGYGPRGRDFIAHVTIPDTVEA
AFTRVAASLGGRYGFRLA

Sequences:

>Translated_258_residues
MFSDDQLHDINLIARFLACDAFAGARPAVGSADLLVLLGNALLPTAWRSFDAVRVGVAPRLLIAGGIGHSTPLLYQALAD
EPAASGLATAGQAEAPLLAALALRQGVLVPSQIWLESASTNCGENARFARALLQEKGATPSRLLLVQDPLMQRRTLATFL
RVWQDRPTVQFASWPTFVPRLERSADGVTIAGAPGALWPLERFMSLLLGEIPRLRDDERGYGPRGRDFIAHVTIPDTVEA
AFTRVAASLGGRYGFRLA
>Mature_258_residues
MFSDDQLHDINLIARFLACDAFAGARPAVGSADLLVLLGNALLPTAWRSFDAVRVGVAPRLLIAGGIGHSTPLLYQALAD
EPAASGLATAGQAEAPLLAALALRQGVLVPSQIWLESASTNCGENARFARALLQEKGATPSRLLLVQDPLMQRRTLATFL
RVWQDRPTVQFASWPTFVPRLERSADGVTIAGAPGALWPLERFMSLLLGEIPRLRDDERGYGPRGRDFIAHVTIPDTVEA
AFTRVAASLGGRYGFRLA

Specific function: Binds S-adenosyl-L-methionine (AdoMet) [H]

COG id: COG1434

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To S.coelicolor SCO4629 [H]

Homologues:

Organism=Escherichia coli, GI1787683, Length=234, Percent_Identity=48.2905982905983, Blast_Score=207, Evalue=7e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003848
- InterPro:   IPR014729 [H]

Pfam domain/function: PF02698 DUF218 [H]

EC number: NA

Molecular weight: Translated: 27734; Mature: 27734

Theoretical pI: Translated: 8.24; Mature: 8.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSDDQLHDINLIARFLACDAFAGARPAVGSADLLVLLGNALLPTAWRSFDAVRVGVAPR
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHHCCHHEEECCCCE
LLIAGGIGHSTPLLYQALADEPAASGLATAGQAEAPLLAALALRQGVLVPSQIWLESAST
EEEECCCCCCHHHHHHHHHCCCHHCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHCCC
NCGENARFARALLQEKGATPSRLLLVQDPLMQRRTLATFLRVWQDRPTVQFASWPTFVPR
CCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHH
LERSADGVTIAGAPGALWPLERFMSLLLGEIPRLRDDERGYGPRGRDFIAHVTIPDTVEA
HHCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCHHHHH
AFTRVAASLGGRYGFRLA
HHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MFSDDQLHDINLIARFLACDAFAGARPAVGSADLLVLLGNALLPTAWRSFDAVRVGVAPR
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHHCCHHEEECCCCE
LLIAGGIGHSTPLLYQALADEPAASGLATAGQAEAPLLAALALRQGVLVPSQIWLESAST
EEEECCCCCCHHHHHHHHHCCCHHCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHCCC
NCGENARFARALLQEKGATPSRLLLVQDPLMQRRTLATFLRVWQDRPTVQFASWPTFVPR
CCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHH
LERSADGVTIAGAPGALWPLERFMSLLLGEIPRLRDDERGYGPRGRDFIAHVTIPDTVEA
HHCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCHHHHH
AFTRVAASLGGRYGFRLA
HHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 10493123 [H]