| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238920586
Identifier: 238920586
GI number: 238920586
Start: 2593228
End: 2594244
Strand: Direct
Name: 238920586
Synonym: NT01EI_2698
Alternate gene names: NA
Gene position: 2593228-2594244 (Clockwise)
Preceding gene: 238920583
Following gene: 238920592
Centisome position: 68.02
GC content: 48.77
Gene sequence:
>1017_bases ATGAATATCGTATTTCTGGGTATTGATCTGGCTAAAAATGTTTTTCAACTCTGCGGGTTAAACCAGGCCGGCAAACCGGT TTATACGAAACGAACTGGCCGAAAAGAATTGCTCCAGACGCTGGCAAATATTCCTGCATGTCTGATTGGGATCGAAGCGT CCACCGGGGCATTTTACTGGCAGCGTGAGTTTGAGAAACTGGGGCACAAAGTAAAGGTCATCAGTCCTCAGTATGTAAAA CCCTTTGTCCGCGGGCAAAAAAATGATGGTAATAATGCACAGGCCATCGCAGTGGCTCTGATGCAACCGACAATGCAGTT CGTGCCACCCAAAAGCCCCGAACAGCAGGATATCCAGGCTTTACACCGGGCAAGGCAGCGTATTATCAATCACCGCACTG CTACAGTCTGTCAAATAAGAGGGCTGTTACTTGACCGGGGGATCCCCATTGGCAGTGCTGTCTCCAGAGCTCGCCGGGCT ATTCCTCTTATCCTTGAAGATGCAGAAAACGGTCTACGTTCCCGTATGCGCAGAACAATTGCCGAGCTCTATGAGCTCTT TAACGATCTCGAGCGTCGGATCCATTTTTTTGATAAGGAAATTGAAACAGTATTCAGGCAATCAGAAGCCTGTCAGCGTA TCGCCAGAGTTAAAGGCATTGACCCTAAAACGGCCACGGCCGTTGTTGCTGCTATTGGCAAAGGAACTGAATTTAAGAAT GGCCGCCACTTTGCTGCATGGCTGGGTCTGGTTCCACGCCAGCATTCGAGTGGCGACAGGCAGGTGCTGATGAATATGAC GAAAAAAGGCGACAAGCATCTGCGGACTCTTTTTATTCATGGTGCCCGCGCTGTCGTCAGGGTTGCCACGAATAACAATG ATGGTCATATGAATCAGTGGGTTAATCAGTTAAAGGAACGGCGCAGATTTAATAAAACGACCGTGGCGGTCGCTAACAAA AACGCGCGAATAATCTGGTCGATGCTGAGAAATGAGACCGAGTATCAGGTAGTGTGA
Upstream 100 bases:
>100_bases TTACTCCCATGCCGCCAAACTTTTTTTCCCAATTAATGGGATGGACTACCTCCTCCCGCTGCGGTTAACTGTACGAAATG TGCTCACCAGGAGAATCACC
Downstream 100 bases:
>100_bases AATTAATCCCCTGCCAGAAAAAGTTGCAGCGTACTGAGAAATGGTGACAGGTTGCACCTGCACAATCGGAACCTGATTTT TATACTGGCCTCAGAGGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 338; Mature: 338
Protein sequence:
>338_residues MNIVFLGIDLAKNVFQLCGLNQAGKPVYTKRTGRKELLQTLANIPACLIGIEASTGAFYWQREFEKLGHKVKVISPQYVK PFVRGQKNDGNNAQAIAVALMQPTMQFVPPKSPEQQDIQALHRARQRIINHRTATVCQIRGLLLDRGIPIGSAVSRARRA IPLILEDAENGLRSRMRRTIAELYELFNDLERRIHFFDKEIETVFRQSEACQRIARVKGIDPKTATAVVAAIGKGTEFKN GRHFAAWLGLVPRQHSSGDRQVLMNMTKKGDKHLRTLFIHGARAVVRVATNNNDGHMNQWVNQLKERRRFNKTTVAVANK NARIIWSMLRNETEYQVV
Sequences:
>Translated_338_residues MNIVFLGIDLAKNVFQLCGLNQAGKPVYTKRTGRKELLQTLANIPACLIGIEASTGAFYWQREFEKLGHKVKVISPQYVK PFVRGQKNDGNNAQAIAVALMQPTMQFVPPKSPEQQDIQALHRARQRIINHRTATVCQIRGLLLDRGIPIGSAVSRARRA IPLILEDAENGLRSRMRRTIAELYELFNDLERRIHFFDKEIETVFRQSEACQRIARVKGIDPKTATAVVAAIGKGTEFKN GRHFAAWLGLVPRQHSSGDRQVLMNMTKKGDKHLRTLFIHGARAVVRVATNNNDGHMNQWVNQLKERRRFNKTTVAVANK NARIIWSMLRNETEYQVV >Mature_338_residues MNIVFLGIDLAKNVFQLCGLNQAGKPVYTKRTGRKELLQTLANIPACLIGIEASTGAFYWQREFEKLGHKVKVISPQYVK PFVRGQKNDGNNAQAIAVALMQPTMQFVPPKSPEQQDIQALHRARQRIINHRTATVCQIRGLLLDRGIPIGSAVSRARRA IPLILEDAENGLRSRMRRTIAELYELFNDLERRIHFFDKEIETVFRQSEACQRIARVKGIDPKTATAVVAAIGKGTEFKN GRHFAAWLGLVPRQHSSGDRQVLMNMTKKGDKHLRTLFIHGARAVVRVATNNNDGHMNQWVNQLKERRRFNKTTVAVANK NARIIWSMLRNETEYQVV
Specific function: Required for the transposition of the insertion element (Potential) [H]
COG id: COG3547
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase IS1111A/IS1328/IS1533 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003346 - InterPro: IPR002525 [H]
Pfam domain/function: PF02371 Transposase_20; PF01548 Transposase_9 [H]
EC number: NA
Molecular weight: Translated: 38365; Mature: 38365
Theoretical pI: Translated: 11.18; Mature: 11.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIVFLGIDLAKNVFQLCGLNQAGKPVYTKRTGRKELLQTLANIPACLIGIEASTGAFYW CEEEEEEHHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHCCCEEEEEEECCCCHHHH QREFEKLGHKVKVISPQYVKPFVRGQKNDGNNAQAIAVALMQPTMQFVPPKSPEQQDIQA HHHHHHHCCEEEEECCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHH LHRARQRIINHRTATVCQIRGLLLDRGIPIGSAVSRARRAIPLILEDAENGLRSRMRRTI HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHH AELYELFNDLERRIHFFDKEIETVFRQSEACQRIARVKGIDPKTATAVVAAIGKGTEFKN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCC GRHFAAWLGLVPRQHSSGDRQVLMNMTKKGDKHLRTLFIHGARAVVRVATNNNDGHMNQW CCHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHEECCCEEEEEEECCCCCHHHHH VNQLKERRRFNKTTVAVANKNARIIWSMLRNETEYQVV HHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCCCEECC >Mature Secondary Structure MNIVFLGIDLAKNVFQLCGLNQAGKPVYTKRTGRKELLQTLANIPACLIGIEASTGAFYW CEEEEEEHHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHCCCEEEEEEECCCCHHHH QREFEKLGHKVKVISPQYVKPFVRGQKNDGNNAQAIAVALMQPTMQFVPPKSPEQQDIQA HHHHHHHCCEEEEECCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHH LHRARQRIINHRTATVCQIRGLLLDRGIPIGSAVSRARRAIPLILEDAENGLRSRMRRTI HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHH AELYELFNDLERRIHFFDKEIETVFRQSEACQRIARVKGIDPKTATAVVAAIGKGTEFKN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCC GRHFAAWLGLVPRQHSSGDRQVLMNMTKKGDKHLRTLFIHGARAVVRVATNNNDGHMNQW CCHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHEECCCEEEEEEECCCCCHHHHH VNQLKERRRFNKTTVAVANKNARIIWSMLRNETEYQVV HHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1324903; 12704232 [H]