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The map label for this gene is yodB [H]

Identifier: 238920552

GI number: 238920552

Start: 2557423

End: 2557959

Strand: Direct

Name: yodB [H]

Synonym: NT01EI_2664

Alternate gene names: 238920552

Gene position: 2557423-2557959 (Clockwise)

Preceding gene: 238920551

Following gene: 238920553

Centisome position: 67.08

GC content: 55.87

Gene sequence:

>537_bases
ATGCAACGCTTTAGTAAAATACAAATATCCCTGCACTGGATAACGCTGCTGCTGATTGCTATCGCCTATATCAGTATTGA
GTTCCGCGGGCTGTTTACCAAGAATTCACCGGCCTATCTATTGATGCGTGAAGTTCACTACAATGCCGGCGTGCTGATAT
GGATTGCGATGCTGATACGTCTTGGGCTGCGTCACATTCTGCCAGATCCGCCGATCCTGCCACCACCGCCGCGCTGGCAG
CATCTGGCGGCGCGCATGATGTACCTGACGCTCTATCTCTGGTTCCTGGCTATCCCGCTGCTGGGCATCGCCTTGATGGC
CTACAGCGGTAAAAGCTGGTCGCTGTTTGGACTGACCATCGCCCCCTGGGTCACGCCGGATCCGGCCATAAAGTCCATGA
TAAAAGAGTGGCACGTGGTGCTGGCCAACCTCGGCTACGCCCTGATCGCCATGCATACCGCCGCCGCGCTGTTCCACCAC
TATGTCATCCGCGATAACGCGCTGCTGCTGATGATGCCGCAGAAAAAAACGCGCTGA

Upstream 100 bases:

>100_bases
AAGACATCATCGCAGGATAAAATCATAGAAAACCCTTTAAGGGTCTCTTAATATTTCTCAGCTAGTCTACAATGTTACAT
TCCAATGAGAGTGAGAGACC

Downstream 100 bases:

>100_bases
CCCGTCTCAGGCGCCGATGCCGGCGCCTGAAATCTCCCGCCCTCCTCCCCCGCCAATCCAGAACGAATATAAATCAGATA
AAATATATTCAGTTGTATAA

Product: cytochrome B561

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MQRFSKIQISLHWITLLLIAIAYISIEFRGLFTKNSPAYLLMREVHYNAGVLIWIAMLIRLGLRHILPDPPILPPPPRWQ
HLAARMMYLTLYLWFLAIPLLGIALMAYSGKSWSLFGLTIAPWVTPDPAIKSMIKEWHVVLANLGYALIAMHTAAALFHH
YVIRDNALLLMMPQKKTR

Sequences:

>Translated_178_residues
MQRFSKIQISLHWITLLLIAIAYISIEFRGLFTKNSPAYLLMREVHYNAGVLIWIAMLIRLGLRHILPDPPILPPPPRWQ
HLAARMMYLTLYLWFLAIPLLGIALMAYSGKSWSLFGLTIAPWVTPDPAIKSMIKEWHVVLANLGYALIAMHTAAALFHH
YVIRDNALLLMMPQKKTR
>Mature_178_residues
MQRFSKIQISLHWITLLLIAIAYISIEFRGLFTKNSPAYLLMREVHYNAGVLIWIAMLIRLGLRHILPDPPILPPPPRWQ
HLAARMMYLTLYLWFLAIPLLGIALMAYSGKSWSLFGLTIAPWVTPDPAIKSMIKEWHVVLANLGYALIAMHTAAALFHH
YVIRDNALLLMMPQKKTR

Specific function: Unknown

COG id: COG3038

COG function: function code C; Cytochrome B561

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b561 family [H]

Homologues:

Organism=Escherichia coli, GI87082013, Length=176, Percent_Identity=59.6590909090909, Blast_Score=221, Evalue=2e-59,
Organism=Escherichia coli, GI87081903, Length=176, Percent_Identity=40.3409090909091, Blast_Score=90, Evalue=9e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: PF00033 Cytochrom_B_N [H]

EC number: NA

Molecular weight: Translated: 20480; Mature: 20480

Theoretical pI: Translated: 10.62; Mature: 10.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRFSKIQISLHWITLLLIAIAYISIEFRGLFTKNSPAYLLMREVHYNAGVLIWIAMLIR
CCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHH
LGLRHILPDPPILPPPPRWQHLAARMMYLTLYLWFLAIPLLGIALMAYSGKSWSLFGLTI
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEE
APWVTPDPAIKSMIKEWHVVLANLGYALIAMHTAAALFHHYVIRDNALLLMMPQKKTR
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
>Mature Secondary Structure
MQRFSKIQISLHWITLLLIAIAYISIEFRGLFTKNSPAYLLMREVHYNAGVLIWIAMLIR
CCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHH
LGLRHILPDPPILPPPPRWQHLAARMMYLTLYLWFLAIPLLGIALMAYSGKSWSLFGLTI
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEE
APWVTPDPAIKSMIKEWHVVLANLGYALIAMHTAAALFHHYVIRDNALLLMMPQKKTR
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]